MD00G1182100.v1.1

Sterile alpha motif (SAM) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0014165
Physical Location & Seq
Forward (+)
42913745 .. 42914350
606 bp
Loading structure...
UTR
Exon/CDS
Intron
MD00G1182100.v1.1.491

Sequence Viewer

Length: 606 bp
ATGGACTGGTTCTCATGGTTGTCGAAAACCGGCCTAGAGCCGTCGCTTGTGTACGAGTACGGCCTTGCTTTTGCACACAATGAGCTAGAAGAAGAGGACATTTTCTACTTCAACCATGAGTTTCTTCAAAGCATGGGAATTTCCATAGCCAAACACAGGCTAGAAATCCTCAAGATTGCTAGAAAAGCAAAGGGTATGAACACTCCGCGTCCAATGCGAAAGCTTTTGGTGGCAATCAAGAGGACTAAGAGGTGTTTGGCCGAGTACATAGGGAAGTGGGTTCGCCGCGATCAGGACTCAATGGCGCTGGCGCTCGTGACAAGGCCAAGCAATCACAGGACAAGGTTTAGAGGAGCCATGCTTAAGAGGAACAAGAAGCTGATCACGGCCAAGCAAGGCAGCCGGTTGCTGCTCACGAATGGGAGTCCTCTGGTGGTTTCTGCCGGGCCTCATCACGTCGATAGCGTTTTGAGTCCGGTGGTGTATGATCTACGAAAGGAAGAAAAGATGATGGACGGTGATGAAGCAAACGACGATGGTTATTGGTGTACTGGAGTTAAAGAAATGAGGTGGGATACCATGTTCCAGGACTTGAAACCTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

202

Amino Acids

23.27

Weight (kDa)

9.49

Isoelectric Point (pI)

45.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15760 AT1G80520
fragaria_vesca FvH4_6g29130
malus_domestica MD00G1182100.v1.1 MD17G1217700.v1.1
prunus_persica Prupe.3G093400_v2.0.a1
pyrus_communis pycom17g22200
rosa_chinensis RchiOBHm_Chr2g0134301
rosa_laevigata RLG00000019385
rosa_multiflora Rmu_sc0014586.1_g000006
rosa_roxburghii Rroxscaffold_2G00110350
rosa_rugosa Rorug02G0316000
rosa_samantha Rh2AG368700 Rh2BG374700 Rh2CG352400 Rh2DG392000
rosa_wichuraiana Rw2G030040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 208, 288
AciI CCGC 2 cut(s) 206, 286
AcoI YGGCCR 2 cut(s) 258, 387
AcsI RAATTY 1 cut(s) 138
AfaI GTAC 4 cut(s) 53, 59, 266, 550
AfiI CCNNNNNNNGG 2 cut(s) 156, 292
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 3 cut(s) 112, 128, 595
AjiI CACGTC 1 cut(s) 457
AjnI CCWGG 1 cut(s) 585
AloI GAACNNNNNNTCC 2 cut(s) 566, 598
AluBI AGCT 3 cut(s) 85, 223, 379
AluI AGCT 3 cut(s) 85, 223, 379
AoxI GGCC 6 cut(s) 31, 61, 258, 323, 387, 446
ApeKI GCWGC 2 cut(s) 399, 409
ApoI RAATTY 1 cut(s) 138
AspLEI GCGC 2 cut(s) 307, 313
AspS9I GGNCC 1 cut(s) 446
AsuC2I CCSGG 1 cut(s) 445
AsuHPI GGTGA 1 cut(s) 530
BauI CACGAG 1 cut(s) 314
BbvI GCAGC 2 cut(s) 396, 411
BccI CCATC 2 cut(s) 505, 530
BceAI ACGGC 3 cut(s) 25, 76, 402
BciT130I CCWGG 1 cut(s) 587
BciVI GTATCC 1 cut(s) 568
BclI TGATCA 1 cut(s) 381
BcnI CCSGG 1 cut(s) 445
BfaI CTAG 4 cut(s) 35, 86, 161, 180
BfoI RGCGCY 2 cut(s) 308, 314
BfrI CTTAAG 1 cut(s) 362
BfuI GTATCC 1 cut(s) 568
BisI GCNGC 3 cut(s) 286, 400, 410
BlsI GCNGC 3 cut(s) 287, 401, 411
Bme1390I CCNGG 2 cut(s) 445, 587
BmgBI CACGTC 1 cut(s) 457
BmgT120I GGNCC 1 cut(s) 446
BmiI GGNNCC 1 cut(s) 355
BmrFI CCNGG 2 cut(s) 445, 587
BpmI CTGGAG 1 cut(s) 573
BpuEI CTTGAG 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 445
BsaWI WCCGGW 1 cut(s) 475
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 292
Bse118I RCCGGY 2 cut(s) 29, 402
Bse1I ACTGG 2 cut(s) 11, 556
BseBI CCWGG 1 cut(s) 587
BseLI CCNNNNNNNGG 2 cut(s) 156, 292
BseNI ACTGG 2 cut(s) 11, 556
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 2 cut(s) 396, 411
Bsh1236I CGCG 2 cut(s) 208, 288
BshFI GGCC 6 cut(s) 33, 63, 260, 325, 389, 448
BsiSI CCGG 4 cut(s) 30, 403, 444, 476
BslI CCNNNNNNNGG 2 cut(s) 156, 292
BsnI GGCC 6 cut(s) 33, 63, 260, 325, 389, 448
Bsp143I GATC 3 cut(s) 289, 381, 487
BspACI CCGC 2 cut(s) 206, 286
BspANI GGCC 6 cut(s) 33, 63, 260, 325, 389, 448
BspFNI CGCG 2 cut(s) 208, 288
BspLI GGNNCC 1 cut(s) 355
BspTI CTTAAG 1 cut(s) 362
BsrFI RCCGGY 2 cut(s) 29, 402
BsrI ACTGG 2 cut(s) 11, 556
BssAI RCCGGY 2 cut(s) 29, 402
BssMI GATC 3 cut(s) 289, 381, 487
BssSI CACGAG 1 cut(s) 314
Bst2BI CACGAG 1 cut(s) 314
Bst2UI CCWGG 1 cut(s) 587
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 87
BstAFI CTTAAG 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 309
BstDEI CTNAG 1 cut(s) 246
BstFNI CGCG 2 cut(s) 208, 288
BstH2I RGCGCY 2 cut(s) 308, 314
BstHHI GCGC 2 cut(s) 307, 313
BstKTI GATC 3 cut(s) 292, 384, 490
BstMBI GATC 3 cut(s) 289, 381, 487
BstMWI GCNNNNNNNGC 2 cut(s) 185, 214
BstNI CCWGG 1 cut(s) 587
BstSCI CCNGG 2 cut(s) 443, 585
BstUI CGCG 2 cut(s) 208, 288
BstV1I GCAGC 2 cut(s) 396, 411
BsuI GTATCC 1 cut(s) 568
BsuRI GGCC 6 cut(s) 33, 63, 260, 325, 389, 448
BtrI CACGTC 1 cut(s) 457
Cac8I GCNNGC 1 cut(s) 309
CfoI GCGC 2 cut(s) 307, 313
Cfr10I RCCGGY 2 cut(s) 29, 402
Cfr13I GGNCC 1 cut(s) 446
CseI GACGC 1 cut(s) 197
Csp6I GTAC 4 cut(s) 52, 58, 265, 549
CviAII CATG 5 cut(s) 15, 116, 133, 358, 580
CviQI GTAC 4 cut(s) 52, 58, 265, 549
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 291, 383, 489
DpnII GATC 3 cut(s) 289, 381, 487
EaeI YGGCCR 2 cut(s) 258, 387
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 585
FaeI CATG 5 cut(s) 18, 119, 136, 361, 583
FaiI YATR 9 cut(s) 16, 117, 134, 146, 197, 269, 359, 486, 581
FatI CATG 5 cut(s) 14, 115, 132, 357, 579
FbaI TGATCA 1 cut(s) 381
Fnu4HI GCNGC 3 cut(s) 286, 400, 410
Fsp4HI GCNGC 3 cut(s) 286, 400, 410
FspBI CTAG 4 cut(s) 35, 86, 161, 180
GlaI GCGC 2 cut(s) 306, 312
GluI GCNGC 3 cut(s) 286, 400, 410
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 2 cut(s) 308, 314
HaeIII GGCC 6 cut(s) 33, 63, 260, 325, 389, 448
HapII CCGG 4 cut(s) 30, 403, 444, 476
HgaI GACGC 1 cut(s) 197
HhaI GCGC 2 cut(s) 307, 313
Hin1II CATG 5 cut(s) 18, 119, 136, 361, 583
Hin6I GCGC 2 cut(s) 305, 311
HinP1I GCGC 2 cut(s) 305, 311
HindIII AAGCTT 1 cut(s) 221
HinfI GANTC 3 cut(s) 296, 424, 472
HpaII CCGG 4 cut(s) 30, 403, 444, 476
HphI GGTGA 1 cut(s) 530
Hpy166II GTNNAC 2 cut(s) 52, 549
Hpy188III TCNNGA 5 cut(s) 172, 238, 293, 316, 415
Hpy8I GTNNAC 2 cut(s) 52, 549
Hpy99I CGWCG 3 cut(s) 46, 461, 536
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 1 cut(s) 456
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 185, 214
HpyF3I CTNAG 1 cut(s) 246
HpySE526I ACGT 1 cut(s) 456
Hsp92II CATG 5 cut(s) 18, 119, 136, 361, 583
HspAI GCGC 2 cut(s) 305, 311
Ksp22I TGATCA 1 cut(s) 381
Kzo9I GATC 3 cut(s) 289, 381, 487
LmnI GCTCC 1 cut(s) 353
Lsp1109I GCAGC 2 cut(s) 396, 411
MaeI CTAG 4 cut(s) 35, 86, 161, 180
MaeII ACGT 1 cut(s) 456
MaeIII GTNAC 1 cut(s) 316
MalI GATC 3 cut(s) 291, 383, 489
MboI GATC 3 cut(s) 289, 381, 487
MboII GAAGA 4 cut(s) 101, 104, 116, 512
MluCI AATT 1 cut(s) 138
MlyI GAGTC 3 cut(s) 290, 433, 481
MnlI CCTC 9 cut(s) 88, 179, 234, 243, 344, 360, 438, 459, 561
MseI TTAA 2 cut(s) 363, 558
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 4 cut(s) 30, 403, 444, 476
MspR9I CCNGG 2 cut(s) 445, 587
MvaI CCWGG 1 cut(s) 587
MvnI CGCG 2 cut(s) 208, 288
MwoI GCNNNNNNNGC 2 cut(s) 185, 214
NciI CCSGG 1 cut(s) 445
NdeII GATC 3 cut(s) 289, 381, 487
NlaIII CATG 5 cut(s) 18, 119, 136, 361, 583
NlaIV GGNNCC 1 cut(s) 355
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 316
PcsI WCGNNNNNNNCGW 1 cut(s) 462
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 3 cut(s) 287, 401, 411
PleI GAGTC 3 cut(s) 290, 432, 480
PpsI GAGTC 3 cut(s) 290, 432, 480
Psp6I CCWGG 1 cut(s) 585
PspGI CCWGG 1 cut(s) 585
PspN4I GGNNCC 1 cut(s) 355
PspPI GGNCC 1 cut(s) 446
RsaI GTAC 4 cut(s) 53, 59, 266, 550
RsaNI GTAC 4 cut(s) 52, 58, 265, 549
SaqAI TTAA 2 cut(s) 363, 558
SatI GCNGC 3 cut(s) 286, 400, 410
Sau3AI GATC 3 cut(s) 289, 381, 487
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 3 cut(s) 290, 433, 481
ScrFI CCNGG 2 cut(s) 445, 587
SetI ASST 8 cut(s) 87, 225, 254, 347, 381, 459, 572, 601
SmlI CTYRAG 2 cut(s) 170, 362
SmoI CTYRAG 2 cut(s) 170, 362
Sse9I AATT 1 cut(s) 138
SsiI CCGC 2 cut(s) 206, 286
SspMI CTAG 4 cut(s) 35, 86, 161, 180
StyD4I CCNGG 2 cut(s) 443, 585
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 1 cut(s) 459
TaqI TCGA 2 cut(s) 23, 459
TasI AATT 1 cut(s) 138
TatI WGTACW 2 cut(s) 264, 548
TauI GCSGC 1 cut(s) 288
Tru1I TTAA 2 cut(s) 363, 558
Tru9I TTAA 2 cut(s) 363, 558
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 2 cut(s) 399, 409
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 2 cut(s) 212, 537
Vha464I CTTAAG 1 cut(s) 362
XapI RAATTY 1 cut(s) 138
XspI CTAG 4 cut(s) 35, 86, 161, 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.