Rorug02G0316000

Sterile alpha motif (SAM) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0014165
Physical Location & Seq
Reverse (-)
38484110 .. 38486885
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0316000.1

Sequence Viewer

Length: 1089 bp
ATGGCTGGCATTGTGAGGGTTGCCGTGCTGCCGGACCCAGAATCTGAGGCTCGATCTCGCTACCCTGTTTCGGGTGAGGCTGTGTCCAGAGATGGGTTTAATTTGGAGTATAAGTGGGAAGCAAAAGGGTCTTGGGATTTGCTTATGCTGGCTCATCCTCTACAAGTGAAGCTTCTTAAGAATGATGACTATGCATGGGACTCGTGGGTGCTGAGGCCAGAGCCTGTTTCGGTTACTTGCCATTCGATTAAGGGTGTTAAGGAAGAGTCGAAAAGGAAGTTGGTTGCCAGGGCGGCGAGGCTGGCTTTGATTGCTGAGGAGGTGGGTTATGTTGATGTGATTCTGGCGATTGAGAAGTACTTGAGGGATGCAATTGAGCCATGGTTTTGGATGGGACTTTTGGTGGGAATGGGTTTTTGTATGAGAGTGAATGGGGTGGCATTGTTACTAAACAAGGATCATTGGATTCTGGTGCAGATGTCGGGTTTGGAGTTTACAATTGAAAGAGGGGTGACTGAATTTGGAGATAGCAGGAATCAGGAGAGCACTAGCGAGGTGGTGAATGCTAACTACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTGTGGCCACAGGGTCAATGCTTGCAGCATTGGAAATCCAGGCAGCTCAAATGTGGTGCCATGTAAGAGAGGGAGATAACATTTATGCACCAGATTACACAAAGGAAAGTCGGGTAGTTGGAGTACTGCTGTGGGCTAATAAGAGAAACAGTAATCTTTGGTTTGCGCCTGCACAGCGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCTATTGTACCTATTACTGAGGAATTGTTCTCTGATGTTGGCTATGTTAGGGAACTTGTGAAGTGGACTGAACCGGCTCTTATTAGAGAGGGTGTTGGGGAAGGATGGAAAGGGTTTGTGTACTCTTTGCAAGGGATTTATGACAAGAATGGTGCTTTGAATGGTCACGATGATGGCAACTCGCTTACGAATCTGTTATGGTGGATCGACAGCAGAGGTGAGGAAAGAGATGGATGCCAAGTCGGAGAGAAGATTTGCTCAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SAM_2

Protein Analysis

362

Amino Acids

40.52

Weight (kDa)

5.01

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro81C PF17652 169 - 329 1.3e-36 Glycosyl hydrolase family 81 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014165)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15760 AT1G80520
fragaria_vesca FvH4_6g29130
malus_domestica MD00G1182100.v1.1 MD17G1217700.v1.1
prunus_persica Prupe.3G093400_v2.0.a1
pyrus_communis pycom17g22200
rosa_chinensis RchiOBHm_Chr2g0134301
rosa_laevigata RLG00000019385
rosa_multiflora Rmu_sc0014586.1_g000006
rosa_roxburghii Rroxscaffold_2G00110350
rosa_rugosa Rorug02G0316000
rosa_samantha Rh2AG368700 Rh2BG374700 Rh2CG352400 Rh2DG392000
rosa_wichuraiana Rw2G030040

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 669
AciI CCGC 2 cut(s) 293, 790
AclWI GGATC 2 cut(s) 465, 1034
AcoI YGGCCR 1 cut(s) 618
AcsI RAATTY 1 cut(s) 518
AfaI GTAC 4 cut(s) 359, 738, 831, 944
AfiI CCNNNNNNNGG 3 cut(s) 70, 71, 93
AflII CTTAAG 1 cut(s) 176
AgsI TTSAA 2 cut(s) 503, 982
AjnI CCWGG 2 cut(s) 287, 651
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 4 cut(s) 172, 578, 659, 817
AluI AGCT 4 cut(s) 172, 578, 659, 817
Alw21I GWGCWC 1 cut(s) 548
Alw26I GTCTC 1 cut(s) 597
AlwI GGATC 2 cut(s) 465, 1034
AlwNI CAGNNNCTG 3 cut(s) 44, 224, 820
AoxI GGCC 2 cut(s) 215, 618
ApeKI GCWGC 6 cut(s) 28, 578, 638, 656, 817, 820
ApoI RAATTY 1 cut(s) 518
AspLEI GCGC 1 cut(s) 781
AspS9I GGNCC 1 cut(s) 34
AsuHPI GGTGA 4 cut(s) 86, 523, 571, 1052
AvaII GGWCC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 620
BanI GGYRCC 1 cut(s) 669
BauI CACGAG 1 cut(s) 202
Bbv12I GWGCWC 1 cut(s) 548
BbvCI CCTCAGC 2 cut(s) 212, 315
BbvI GCAGC 6 cut(s) 15, 565, 650, 668, 804, 807
BccI CCATC 5 cut(s) 86, 385, 921, 989, 1046
BceAI ACGGC 1 cut(s) 8
BcgI CGANNNNNNTGC 2 cut(s) 183, 217
BciT130I CCWGG 2 cut(s) 289, 653
BcoDI GTCTC 1 cut(s) 597
BfaI CTAG 1 cut(s) 549
BfrI CTTAAG 1 cut(s) 176
BglI GCCNNNNNGGC 1 cut(s) 293
BisI GCNGC 7 cut(s) 29, 294, 579, 639, 657, 818, 821
BlsI GCNGC 7 cut(s) 30, 295, 580, 640, 658, 819, 822
BmcAI AGTACT 2 cut(s) 359, 738
Bme1390I CCNGG 2 cut(s) 289, 653
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 2 cut(s) 36, 671
BmrFI CCNGG 2 cut(s) 289, 653
BmsI GCATC 2 cut(s) 358, 1046
Bpu10I CCTNAGC 2 cut(s) 212, 315
BpuEI CTTGAG 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 288, 380
BsaXI ACNNNNNCTCC 2 cut(s) 98, 128
Bsc4I CCNNNNNNNGG 3 cut(s) 70, 71, 93
Bse118I RCCGGY 1 cut(s) 895
BseBI CCWGG 2 cut(s) 289, 653
BseDI CCNNGG 2 cut(s) 288, 380
BseGI GGATG 5 cut(s) 154, 373, 396, 932, 1061
BseLI CCNNNNNNNGG 3 cut(s) 70, 71, 93
BseMII CTCAG 5 cut(s) 36, 203, 306, 588, 831
BseRI GAGGAG 1 cut(s) 332
BseXI GCAGC 6 cut(s) 15, 565, 650, 668, 804, 807
BsgI GTGCAG 2 cut(s) 494, 768
BshFI GGCC 2 cut(s) 217, 620
BshNI GGYRCC 1 cut(s) 669
BsiHKAI GWGCWC 1 cut(s) 548
BsiSI CCGG 2 cut(s) 32, 896
BslFI GGGAC 2 cut(s) 212, 408
BslI CCNNNNNNNGG 3 cut(s) 70, 71, 93
BsmAI GTCTC 1 cut(s) 597
BsmFI GGGAC 2 cut(s) 212, 408
BsmI GAATGC 1 cut(s) 568
BsnI GGCC 2 cut(s) 217, 620
Bsp1286I GDGCHC 1 cut(s) 548
Bsp143I GATC 4 cut(s) 53, 457, 610, 1026
Bsp19I CCATGG 1 cut(s) 380
BspACI CCGC 2 cut(s) 293, 790
BspANI GGCC 2 cut(s) 217, 620
BspCNI CTCAG 5 cut(s) 37, 204, 307, 587, 832
BspLI GGNNCC 2 cut(s) 36, 671
BspPI GGATC 2 cut(s) 465, 1034
BspT107I GGYRCC 1 cut(s) 669
BspTI CTTAAG 1 cut(s) 176
BsrFI RCCGGY 1 cut(s) 895
BssAI RCCGGY 1 cut(s) 895
BssECI CCNNGG 2 cut(s) 288, 380
BssMI GATC 4 cut(s) 53, 457, 610, 1026
BssSI CACGAG 1 cut(s) 202
BssT1I CCWWGG 1 cut(s) 380
Bst2BI CACGAG 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 289, 653
Bst4CI ACNGT 1 cut(s) 764
Bst6I CTCTTC 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 176
BstC8I GCNNGC 6 cut(s) 7, 150, 303, 636, 783, 803
BstDEI CTNAG 6 cut(s) 45, 212, 315, 574, 840, 1081
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 5 cut(s) 154, 373, 396, 932, 1061
BstHHI GCGC 1 cut(s) 781
BstKTI GATC 4 cut(s) 56, 460, 613, 1029
BstMAI GTCTC 1 cut(s) 597
BstMBI GATC 4 cut(s) 53, 457, 610, 1026
BstMWI GCNNNNNNNGC 4 cut(s) 293, 302, 311, 787
BstNI CCWGG 2 cut(s) 289, 653
BstSCI CCNGG 2 cut(s) 287, 651
BstV1I GCAGC 6 cut(s) 15, 565, 650, 668, 804, 807
BstXI CCANNNNNNTGG 1 cut(s) 387
BsuRI GGCC 2 cut(s) 217, 620
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 5 cut(s) 154, 373, 396, 932, 1061
BtsIMutI CAGTG 1 cut(s) 606
Cac8I GCNNGC 6 cut(s) 7, 150, 303, 636, 783, 803
CaiI CAGNNNCTG 3 cut(s) 44, 224, 820
CfoI GCGC 1 cut(s) 781
Cfr10I RCCGGY 1 cut(s) 895
Cfr13I GGNCC 1 cut(s) 34
Csp6I GTAC 4 cut(s) 358, 737, 830, 943
CviAII CATG 3 cut(s) 195, 381, 674
CviQI GTAC 4 cut(s) 358, 737, 830, 943
DdeI CTNAG 6 cut(s) 45, 212, 315, 574, 840, 1081
DpnI GATC 4 cut(s) 55, 459, 612, 1028
DpnII GATC 4 cut(s) 53, 457, 610, 1026
EaeI YGGCCR 1 cut(s) 618
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
Eco130I CCWWGG 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 34
EcoRII CCWGG 2 cut(s) 287, 651
EcoT14I CCWWGG 1 cut(s) 380
EcoT22I ATGCAT 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 3 cut(s) 198, 384, 677
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FaqI GGGAC 2 cut(s) 212, 408
FatI CATG 3 cut(s) 194, 380, 673
FauNDI CATATG 1 cut(s) 598
Fnu4HI GCNGC 7 cut(s) 29, 294, 579, 639, 657, 818, 821
FokI GGATG 5 cut(s) 141, 380, 403, 939, 1068
Fsp4HI GCNGC 7 cut(s) 29, 294, 579, 639, 657, 818, 821
FspBI CTAG 1 cut(s) 549
GlaI GCGC 1 cut(s) 780
GluI GCNGC 7 cut(s) 29, 294, 579, 639, 657, 818, 821
HaeIII GGCC 2 cut(s) 217, 620
HapII CCGG 2 cut(s) 32, 896
HhaI GCGC 1 cut(s) 781
Hin1II CATG 3 cut(s) 198, 384, 677
Hin6I GCGC 1 cut(s) 779
HinP1I GCGC 1 cut(s) 779
HindIII AAGCTT 1 cut(s) 170
HinfI GANTC 8 cut(s) 41, 200, 266, 340, 466, 535, 810, 1012
HpaII CCGG 2 cut(s) 32, 896
HphI GGTGA 4 cut(s) 86, 523, 571, 1052
Hpy166II GTNNAC 3 cut(s) 495, 888, 943
Hpy188I TCNGA 3 cut(s) 46, 856, 1067
Hpy188III TCNNGA 3 cut(s) 87, 539, 989
Hpy8I GTNNAC 3 cut(s) 495, 888, 943
HpyAV CCTTC 1 cut(s) 917
HpyCH4III ACNGT 1 cut(s) 764
HpyCH4V TGCA 8 cut(s) 194, 371, 475, 581, 638, 701, 785, 952
HpyF10VI GCNNNNNNNGC 4 cut(s) 293, 302, 311, 787
HpyF3I CTNAG 6 cut(s) 45, 212, 315, 574, 840, 1081
Hsp92II CATG 3 cut(s) 198, 384, 677
HspAI GCGC 1 cut(s) 779
Kzo9I GATC 4 cut(s) 53, 457, 610, 1026
Lsp1109I GCAGC 6 cut(s) 15, 565, 650, 668, 804, 807
LweI GCATC 2 cut(s) 358, 1046
MaeI CTAG 1 cut(s) 549
MaeIII GTNAC 4 cut(s) 232, 444, 511, 986
MalI GATC 4 cut(s) 55, 459, 612, 1028
MboI GATC 4 cut(s) 53, 457, 610, 1026
MboII GAAGA 2 cut(s) 275, 1084
MfeI CAATTG 2 cut(s) 372, 498
MhlI GDGCHC 1 cut(s) 548
MlsI TGGCCA 1 cut(s) 620
MluCI AATT 5 cut(s) 100, 372, 498, 518, 845
MluNI TGGCCA 1 cut(s) 620
MlyI GAGTC 2 cut(s) 194, 275
MmeI TCCRAC 2 cut(s) 712, 1045
Mox20I TGGCCA 1 cut(s) 620
Mph1103I ATGCAT 1 cut(s) 196
MscI TGGCCA 1 cut(s) 620
MseI TTAA 4 cut(s) 99, 177, 249, 258
MslI CAYNNNNRTG 1 cut(s) 993
Msp20I TGGCCA 1 cut(s) 620
MspA1I CMGCKG 3 cut(s) 578, 790, 817
MspCI CTTAAG 1 cut(s) 176
MspI CCGG 2 cut(s) 32, 896
MspR9I CCNGG 2 cut(s) 289, 653
MunI CAATTG 2 cut(s) 372, 498
Mva1269I GAATGC 1 cut(s) 568
MvaI CCWGG 2 cut(s) 289, 653
MwoI GCNNNNNNNGC 4 cut(s) 293, 302, 311, 787
NcoI CCATGG 1 cut(s) 380
NdeI CATATG 1 cut(s) 598
NdeII GATC 4 cut(s) 53, 457, 610, 1026
NlaIII CATG 3 cut(s) 198, 384, 677
NlaIV GGNNCC 2 cut(s) 36, 671
NmuCI GTSAC 2 cut(s) 511, 986
NsiI ATGCAT 1 cut(s) 196
PctI GAATGC 1 cut(s) 568
PfeI GAWTC 6 cut(s) 41, 340, 466, 535, 810, 1012
PkrI GCNGC 7 cut(s) 30, 295, 580, 640, 658, 819, 822
PleI GAGTC 2 cut(s) 194, 274
PpsI GAGTC 2 cut(s) 194, 274
Psp6I CCWGG 2 cut(s) 287, 651
PspGI CCWGG 2 cut(s) 287, 651
PspN4I GGNNCC 2 cut(s) 36, 671
PspPI GGNCC 1 cut(s) 34
PstNI CAGNNNCTG 3 cut(s) 44, 224, 820
PvuII CAGCTG 2 cut(s) 578, 817
RsaI GTAC 4 cut(s) 359, 738, 831, 944
RsaNI GTAC 4 cut(s) 358, 737, 830, 943
RseI CAYNNNNRTG 1 cut(s) 993
SaqAI TTAA 4 cut(s) 99, 177, 249, 258
SatI GCNGC 7 cut(s) 29, 294, 579, 639, 657, 818, 821
Sau3AI GATC 4 cut(s) 53, 457, 610, 1026
Sau96I GGNCC 1 cut(s) 34
ScaI AGTACT 2 cut(s) 359, 738
SchI GAGTC 2 cut(s) 194, 275
ScrFI CCNGG 2 cut(s) 289, 653
SduI GDGCHC 1 cut(s) 548
SetI ASST 8 cut(s) 174, 324, 558, 580, 661, 819, 835, 1042
SfaNI GCATC 2 cut(s) 358, 1046
SinI GGWCC 1 cut(s) 34
SmiMI CAYNNNNRTG 1 cut(s) 993
SmlI CTYRAG 2 cut(s) 176, 361
SmoI CTYRAG 2 cut(s) 176, 361
Sse9I AATT 5 cut(s) 100, 372, 498, 518, 845
SsiI CCGC 2 cut(s) 293, 790
SspMI CTAG 1 cut(s) 549
StyD4I CCNGG 2 cut(s) 287, 651
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 1 cut(s) 764
TaqI TCGA 4 cut(s) 52, 245, 269, 1029
TasI AATT 5 cut(s) 100, 372, 498, 518, 845
TatI WGTACW 3 cut(s) 357, 736, 942
TauI GCSGC 1 cut(s) 296
TfiI GAWTC 6 cut(s) 41, 340, 466, 535, 810, 1012
Tru1I TTAA 4 cut(s) 99, 177, 249, 258
Tru9I TTAA 4 cut(s) 99, 177, 249, 258
TscAI CASTG 1 cut(s) 613
TseFI GTSAC 2 cut(s) 511, 986
TseI GCWGC 6 cut(s) 28, 578, 638, 656, 817, 820
Tsp45I GTSAC 2 cut(s) 511, 986
TspRI CASTG 1 cut(s) 613
Vha464I CTTAAG 1 cut(s) 176
VpaK11BI GGWCC 1 cut(s) 34
XapI RAATTY 1 cut(s) 518
XspI CTAG 1 cut(s) 549
ZrmI AGTACT 2 cut(s) 359, 738
Zsp2I ATGCAT 1 cut(s) 196
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.