AT1G15980

Photosynthetic NDH subunit of subcomplex B 1, chloroplastic

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
5489145 .. 5491363
2219 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G15980.1

Sequence Viewer

Length: 1386 bp
ATGGCTTCTTCACTTCCTCTGTTACCCAAACCCATTTCCCCATTCTTTAAAACGCCGCCGTTTTCTACCTCCAAACCACTCGTCTTCCTCAACTTTCAAACTCGTCTTACGTCGAGATCTTCCGATGTATCGGTCAATCTCAAGAAGAAGAATAATCCGTGGCTCGACCCGTTTGATAGCGGTGAAGACCCGGATAACGAATACGGGTCCTTGTTTGCCGACGGAAAACAAGACGAGGATCCAAGACCACCGGATAATCCTGATAACCCTTACGGCTTCTTGAAGTTTCCAAAGGGTTACACCGTCGAGCTTGCTTCTTTACCGTTGAAAATCAGAGGAGATGTTAGACGATGTTGCTGCGTTATCTCCGGTGGCGTTTACGAGAATCTACTCTTTTTCCCGACTATTCAGCTAATCAAAGACAGGTATCCTGGTGTTCAGGTAGATATATTAACGACTGAAAGAGGAAAACAAACATACGAGCTAAACAAAAACGTGAGATGGGCCAATGTGTATGATCCGGATGATCATTGGCCTGAACCAGCTGAATACACAGACATGATCGGACTCCTCAAAGGAAGGTACTATGACATGGTTCTGTCCACGAAGCTAGCAGGGTTAGGCCACGCAGCGTTCTTGTTCATGACAACGGCTCGAGACAGGGTTAGTTACATTTACCCGAATGTTAACTCTGCAGGAGCTGGTCTGATGCTGTCCGAGACCTTTACAGCAGAAAATACCAACCTTTCAGAATTAGGTTATAGCATGTATACTCAGATGGAAGATTGGTTAGGAAGACCGTTTAGGAGTGTTCCAAGGACTCCTCTGTTGCCACTTAGGGTATCGATTTCACGGAAAGTGAAAGAGGTTGTGGCTGCAAAGTATAGGAATGCTGGAGCAGTGACGGGGAAGTTTATAGTGATTCATGGTATTGAATCAGATTCTAAGGCATCAATGCAATCAAAAGGAGATGCTGATAGTTTACTTTCACTTGAAAAATGGGCTAAGATTATAAAGGGTGTAAGGGGATTCAAGCCGGTCTTTGTGATTCCACATGAGAAAGAAAGAGAAAACGTTGAAGATTTTGTGGGTGATGATACATCTATAGTGTTCATCACAACACCAGGACAGTTGGCTGCTCTGATAAACGATTCTGCTGGAGTCATCGCAACAAACACAGCTGCGATTCAACTAGCTAATGCGCGAGACAAACCATGTATTGGGTTGTTCTCTTCAGAAGAGAAAGGGAAGCTCTTTGTACCGTATGCAGAAGAGAAGAGTAACTGTGTAATTATTGCTTCGAAGACTGGAAAACTAGCAGATATCGACATTGGAACTGTTAAAAATGCAATGCAGGTCTTTGAAGGATCATTGGCTCTCGTGTAG

Protein Analysis

461

Amino Acids

51.02

Weight (kDa)

6.49

Isoelectric Point (pI)

24.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013329)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1013
Acc36I ACCTGC 1 cut(s) 1345
AccB7I CCANNNNNTGG 1 cut(s) 1220
AccI GTMKAC 1 cut(s) 770
AccII CGCG 1 cut(s) 1204
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 2 cut(s) 56, 180
AclI AACGTT 1 cut(s) 1074
AclWI GGATC 4 cut(s) 233, 246, 512, 1375
AcuI CTGAAG 1 cut(s) 1218
AfaI GTAC 2 cut(s) 584, 1260
AfiI CCNNNNNNNGG 1 cut(s) 1220
AgsI TTSAA 9 cut(s) 98, 283, 328, 935, 995, 1033, 1079, 1190, 1364
AjnI CCWGG 2 cut(s) 430, 1123
AluBI AGCT 9 cut(s) 310, 412, 484, 545, 610, 701, 1181, 1196, 1252
AluI AGCT 9 cut(s) 310, 412, 484, 545, 610, 701, 1181, 1196, 1252
Alw26I GTCTC 3 cut(s) 651, 713, 1200
AlwI GGATC 4 cut(s) 233, 246, 512, 1375
AlwNI CAGNNNCTG 1 cut(s) 701
Ama87I CYCGRG 1 cut(s) 654
Aor13HI TCCGGA 1 cut(s) 520
AoxI GGCC 3 cut(s) 504, 533, 622
ApeKI GCWGC 5 cut(s) 357, 629, 875, 1136, 1181
ArsI GACNNNNNNTTYG 2 cut(s) 66, 98
AspLEI GCGC 1 cut(s) 1204
AspS9I GGNCC 2 cut(s) 207, 504
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 2 cut(s) 194, 1103
AsuII TTCGAA 1 cut(s) 1301
AsuNHI GCTAGC 1 cut(s) 610
AvaI CYCGRG 1 cut(s) 654
AvaII GGWCC 1 cut(s) 207
BamHI GGATCC 1 cut(s) 238
BauI CACGAG 1 cut(s) 1379
BbsI GAAGAC 4 cut(s) 76, 192, 802, 1310
BbvI GCAGC 5 cut(s) 344, 641, 862, 1123, 1168
BccI CCATC 2 cut(s) 495, 772
BceAI ACGGC 3 cut(s) 43, 289, 666
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BciT130I CCWGG 2 cut(s) 432, 1125
BciVI GTATCC 1 cut(s) 438
BclI TGATCA 1 cut(s) 526
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 3 cut(s) 651, 713, 1200
BfaI CTAG 3 cut(s) 611, 1193, 1316
BfmI CTRYAG 2 cut(s) 693, 1104
BfuAI ACCTGC 1 cut(s) 1345
BfuI GTATCC 1 cut(s) 438
BglII AGATCT 1 cut(s) 116
BisI GCNGC 6 cut(s) 56, 358, 630, 876, 1137, 1182
BlsI GCNGC 6 cut(s) 57, 359, 631, 877, 1138, 1183
Bme1390I CCNGG 3 cut(s) 191, 432, 1125
Bme18I GGWCC 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 654
BmgT120I GGNCC 2 cut(s) 207, 504
BmiI GGNNCC 2 cut(s) 208, 240
BmrFI CCNGG 3 cut(s) 191, 432, 1125
BmsI GCATC 3 cut(s) 699, 959, 961
BmtI GCTAGC 1 cut(s) 614
BpiI GAAGAC 4 cut(s) 76, 192, 802, 1310
BpmI CTGGAG 2 cut(s) 915, 1179
Bpu14I TTCGAA 1 cut(s) 1301
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 191
Bsa29I ATCGAT 1 cut(s) 845
BsaI GGTCTC 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 158, 815
BsaWI WCCGGW 3 cut(s) 250, 368, 520
Bsc4I CCNNNNNNNGG 1 cut(s) 1220
Bse118I RCCGGY 1 cut(s) 1036
Bse1I ACTGG 1 cut(s) 1312
Bse3DI GCAATG 1 cut(s) 1356
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 2 cut(s) 432, 1125
BseCI ATCGAT 1 cut(s) 845
BseDI CCNNGG 2 cut(s) 158, 815
BseGI GGATG 1 cut(s) 529
BseLI CCNNNNNNNGG 1 cut(s) 1220
BseMI GCAATG 1 cut(s) 1356
BseMII CTCAG 1 cut(s) 788
BseNI ACTGG 1 cut(s) 1312
BseRI GAGGAG 3 cut(s) 351, 560, 813
BseXI GCAGC 5 cut(s) 344, 641, 862, 1123, 1168
Bsh1236I CGCG 1 cut(s) 1204
BshFI GGCC 3 cut(s) 506, 535, 624
BshVI ATCGAT 1 cut(s) 845
BsiHKCI CYCGRG 1 cut(s) 654
BsiSI CCGG 5 cut(s) 191, 251, 369, 521, 1037
BslI CCNNNNNNNGG 1 cut(s) 1220
BsmAI GTCTC 3 cut(s) 651, 713, 1200
BsmI GAATGC 1 cut(s) 895
BsnI GGCC 3 cut(s) 506, 535, 624
Bso31I GGTCTC 1 cut(s) 713
BsoBI CYCGRG 1 cut(s) 654
Bsp119I TTCGAA 1 cut(s) 1301
Bsp13I TCCGGA 1 cut(s) 520
Bsp143I GATC 6 cut(s) 116, 238, 517, 526, 561, 1367
BspACI CCGC 2 cut(s) 56, 180
BspANI GGCC 3 cut(s) 506, 535, 624
BspCNI CTCAG 1 cut(s) 787
BspDI ATCGAT 1 cut(s) 845
BspEI TCCGGA 1 cut(s) 520
BspFNI CGCG 1 cut(s) 1204
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 2 cut(s) 208, 240
BspMAI CTGCAG 1 cut(s) 697
BspMI ACCTGC 1 cut(s) 1345
BspOI GCTAGC 1 cut(s) 614
BspPI GGATC 4 cut(s) 233, 246, 512, 1375
BspT104I TTCGAA 1 cut(s) 1301
BspTNI GGTCTC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 1356
BsrFI RCCGGY 1 cut(s) 1036
BsrI ACTGG 1 cut(s) 1312
BssAI RCCGGY 1 cut(s) 1036
BssECI CCNNGG 2 cut(s) 158, 815
BssMI GATC 6 cut(s) 116, 238, 517, 526, 561, 1367
BssNAI GTATAC 1 cut(s) 771
BssSI CACGAG 1 cut(s) 1379
BssT1I CCWWGG 1 cut(s) 815
Bst1107I GTATAC 1 cut(s) 771
Bst2BI CACGAG 1 cut(s) 1379
Bst2UI CCWGG 2 cut(s) 432, 1125
Bst4CI ACNGT 7 cut(s) 304, 324, 801, 1131, 1263, 1286, 1339
Bst6I CTCTTC 4 cut(s) 1233, 1237, 1266, 1271
BstBI TTCGAA 1 cut(s) 1301
BstC8I GCNNGC 2 cut(s) 312, 612
BstDEI CTNAG 4 cut(s) 774, 836, 945, 1005
BstDSI CCRYGG 1 cut(s) 158
BstF5I GGATG 1 cut(s) 529
BstFNI CGCG 1 cut(s) 1204
BstHHI GCGC 1 cut(s) 1204
BstKTI GATC 6 cut(s) 119, 241, 520, 529, 564, 1370
BstMAI GTCTC 3 cut(s) 651, 713, 1200
BstMBI GATC 6 cut(s) 116, 238, 517, 526, 561, 1367
BstNI CCWGG 2 cut(s) 432, 1125
BstNSI RCATGY 1 cut(s) 769
BstSCI CCNGG 3 cut(s) 189, 430, 1123
BstSFI CTRYAG 2 cut(s) 693, 1104
BstUI CGCG 1 cut(s) 1204
BstV1I GCAGC 5 cut(s) 344, 641, 862, 1123, 1168
BstV2I GAAGAC 4 cut(s) 76, 192, 802, 1310
BstX2I RGATCY 2 cut(s) 116, 238
BstYI RGATCY 2 cut(s) 116, 238
BstZ17I GTATAC 1 cut(s) 771
Bsu15I ATCGAT 1 cut(s) 845
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 3 cut(s) 506, 535, 624
BsuTUI ATCGAT 1 cut(s) 845
BtgI CCRYGG 1 cut(s) 158
BtgZI GCGATG 1 cut(s) 1150
BtsCI GGATG 1 cut(s) 529
BtsI GCAGTG 1 cut(s) 906
BtsIMutI CAGTG 1 cut(s) 906
BveI ACCTGC 1 cut(s) 1345
Cac8I GCNNGC 2 cut(s) 312, 612
CaiI CAGNNNCTG 1 cut(s) 701
CciI TCATGA 1 cut(s) 642
CfoI GCGC 1 cut(s) 1204
Cfr10I RCCGGY 1 cut(s) 1036
Cfr13I GGNCC 2 cut(s) 207, 504
ClaI ATCGAT 1 cut(s) 845
Csp6I GTAC 2 cut(s) 583, 1259
CviAII CATG 7 cut(s) 559, 592, 643, 766, 926, 1055, 1215
CviQI GTAC 2 cut(s) 583, 1259
DdeI CTNAG 4 cut(s) 774, 836, 945, 1005
DpnI GATC 6 cut(s) 118, 240, 519, 528, 563, 1369
DpnII GATC 6 cut(s) 116, 238, 517, 526, 561, 1367
DraI TTTAAA 1 cut(s) 49
Eam1104I CTCTTC 4 cut(s) 1233, 1237, 1266, 1271
EarI CTCTTC 4 cut(s) 1233, 1237, 1266, 1271
Eco130I CCWWGG 1 cut(s) 815
Eco31I GGTCTC 1 cut(s) 713
Eco32I GATATC 1 cut(s) 1324
Eco47I GGWCC 1 cut(s) 207
Eco57I CTGAAG 1 cut(s) 1218
Eco88I CYCGRG 1 cut(s) 654
EcoO109I RGGNCCY 1 cut(s) 207
EcoRII CCWGG 2 cut(s) 430, 1123
EcoRV GATATC 1 cut(s) 1324
EcoT14I CCWWGG 1 cut(s) 815
ErhI CCWWGG 1 cut(s) 815
FaeI CATG 7 cut(s) 562, 595, 646, 769, 929, 1058, 1218
FalI AAGNNNNNCTT 2 cut(s) 1025, 1057
FatI CATG 7 cut(s) 558, 591, 642, 765, 925, 1054, 1214
FbaI TGATCA 1 cut(s) 526
FblI GTMKAC 1 cut(s) 770
Fnu4HI GCNGC 6 cut(s) 56, 358, 630, 876, 1137, 1182
FokI GGATG 1 cut(s) 536
Fsp4HI GCNGC 6 cut(s) 56, 358, 630, 876, 1137, 1182
FspBI CTAG 3 cut(s) 611, 1193, 1316
GlaI GCGC 1 cut(s) 1203
GluI GCNGC 6 cut(s) 56, 358, 630, 876, 1137, 1182
GsuI CTGGAG 2 cut(s) 915, 1179
HaeIII GGCC 3 cut(s) 506, 535, 624
HapII CCGG 5 cut(s) 191, 251, 369, 521, 1037
HhaI GCGC 1 cut(s) 1204
Hin1II CATG 7 cut(s) 562, 595, 646, 769, 929, 1058, 1218
Hin6I GCGC 1 cut(s) 1202
HinP1I GCGC 1 cut(s) 1202
HincII GTYRAC 1 cut(s) 688
HindII GTYRAC 1 cut(s) 688
HpaI GTTAAC 1 cut(s) 688
HpaII CCGG 5 cut(s) 191, 251, 369, 521, 1037
HphI GGTGA 2 cut(s) 194, 1103
Hpy166II GTNNAC 5 cut(s) 379, 603, 688, 771, 983
Hpy188III TCNNGA 8 cut(s) 114, 142, 260, 280, 400, 521, 643, 656
Hpy8I GTNNAC 5 cut(s) 379, 603, 688, 771, 983
Hpy99I CGWCG 3 cut(s) 115, 224, 308
HpyAV CCTTC 2 cut(s) 573, 1358
HpyCH4III ACNGT 7 cut(s) 304, 324, 801, 1131, 1263, 1286, 1339
HpyCH4IV ACGT 3 cut(s) 110, 495, 1074
HpyCH4V TGCA 6 cut(s) 695, 878, 958, 1268, 1349, 1354
HpyF3I CTNAG 4 cut(s) 774, 836, 945, 1005
HpySE526I ACGT 3 cut(s) 110, 495, 1074
Hsp92II CATG 7 cut(s) 562, 595, 646, 769, 929, 1058, 1218
HspAI GCGC 1 cut(s) 1202
Kpn2I TCCGGA 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 526
KspAI GTTAAC 1 cut(s) 688
Kzo9I GATC 6 cut(s) 116, 238, 517, 526, 561, 1367
LmnI GCTCC 2 cut(s) 698, 896
Lsp1109I GCAGC 5 cut(s) 344, 641, 862, 1123, 1168
LweI GCATC 3 cut(s) 699, 959, 961
MaeI CTAG 3 cut(s) 611, 1193, 1316
MaeII ACGT 3 cut(s) 110, 495, 1074
MaeIII GTNAC 5 cut(s) 21, 296, 668, 901, 1280
MalI GATC 6 cut(s) 118, 240, 519, 528, 563, 1369
MboI GATC 6 cut(s) 116, 238, 517, 526, 561, 1367
MflI RGATCY 2 cut(s) 116, 238
MluCI AATT 2 cut(s) 752, 1290
MlyI GAGTC 3 cut(s) 561, 814, 1170
MnlI CCTC 9 cut(s) 27, 79, 98, 229, 329, 458, 581, 834, 859
MroI TCCGGA 1 cut(s) 520
MseI TTAA 4 cut(s) 48, 452, 687, 1341
MslI CAYNNNNRTG 1 cut(s) 557
MspA1I CMGCKG 2 cut(s) 545, 1181
MspI CCGG 5 cut(s) 191, 251, 369, 521, 1037
MspR9I CCNGG 3 cut(s) 191, 432, 1125
Mva1269I GAATGC 1 cut(s) 895
MvaI CCWGG 2 cut(s) 432, 1125
MvnI CGCG 1 cut(s) 1204
NciI CCSGG 1 cut(s) 191
NdeII GATC 6 cut(s) 116, 238, 517, 526, 561, 1367
NheI GCTAGC 1 cut(s) 610
NlaIII CATG 7 cut(s) 562, 595, 646, 769, 929, 1058, 1218
NlaIV GGNNCC 2 cut(s) 208, 240
NmuCI GTSAC 1 cut(s) 901
NspI RCATGY 1 cut(s) 769
NspV TTCGAA 1 cut(s) 1301
PaeR7I CTCGAG 1 cut(s) 654
PagI TCATGA 1 cut(s) 642
PctI GAATGC 1 cut(s) 895
PfeI GAWTC 8 cut(s) 385, 922, 935, 941, 1029, 1048, 1151, 1186
PflMI CCANNNNNTGG 1 cut(s) 1220
PkrI GCNGC 6 cut(s) 57, 359, 631, 877, 1138, 1183
PleI GAGTC 3 cut(s) 561, 814, 1169
PpsI GAGTC 3 cut(s) 561, 814, 1169
PpuMI RGGWCCY 1 cut(s) 207
PsiI TTATAA 1 cut(s) 1013
Psp1406I AACGTT 1 cut(s) 1074
Psp5II RGGWCCY 1 cut(s) 207
Psp6I CCWGG 2 cut(s) 430, 1123
PspGI CCWGG 2 cut(s) 430, 1123
PspN4I GGNNCC 2 cut(s) 208, 240
PspPI GGNCC 2 cut(s) 207, 504
PspPPI RGGWCCY 1 cut(s) 207
PstI CTGCAG 1 cut(s) 697
PstNI CAGNNNCTG 1 cut(s) 701
PsuI RGATCY 2 cut(s) 116, 238
PvuII CAGCTG 2 cut(s) 545, 1181
RsaI GTAC 2 cut(s) 584, 1260
RsaNI GTAC 2 cut(s) 583, 1259
RseI CAYNNNNRTG 1 cut(s) 557
SaqAI TTAA 4 cut(s) 48, 452, 687, 1341
SatI GCNGC 6 cut(s) 56, 358, 630, 876, 1137, 1182
Sau3AI GATC 6 cut(s) 116, 238, 517, 526, 561, 1367
Sau96I GGNCC 2 cut(s) 207, 504
SchI GAGTC 3 cut(s) 561, 814, 1170
ScrFI CCNGG 3 cut(s) 191, 432, 1125
SfaNI GCATC 3 cut(s) 699, 959, 961
SfcI CTRYAG 2 cut(s) 693, 1104
Sfr274I CTCGAG 1 cut(s) 654
SfuI TTCGAA 1 cut(s) 1301
SinI GGWCC 1 cut(s) 207
SlaI CTCGAG 1 cut(s) 654
SmiMI CAYNNNNRTG 1 cut(s) 557
SmlI CTYRAG 2 cut(s) 140, 654
SmoI CTYRAG 2 cut(s) 140, 654
Sse9I AATT 2 cut(s) 752, 1290
SsiI CCGC 2 cut(s) 56, 180
SspMI CTAG 3 cut(s) 611, 1193, 1316
StyD4I CCNGG 3 cut(s) 189, 430, 1123
StyI CCWWGG 1 cut(s) 815
TaaI ACNGT 7 cut(s) 304, 324, 801, 1131, 1263, 1286, 1339
TaiI ACGT 3 cut(s) 113, 498, 1077
TaqI TCGA 7 cut(s) 113, 165, 306, 655, 845, 1301, 1326
TaqII GACCGA 1 cut(s) 121
TasI AATT 2 cut(s) 752, 1290
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 8 cut(s) 385, 922, 935, 941, 1029, 1048, 1151, 1186
Tru1I TTAA 4 cut(s) 48, 452, 687, 1341
Tru9I TTAA 4 cut(s) 48, 452, 687, 1341
TscAI CASTG 1 cut(s) 906
TseFI GTSAC 1 cut(s) 901
TseI GCWGC 5 cut(s) 357, 629, 875, 1136, 1181
Tsp45I GTSAC 1 cut(s) 901
TspDTI ATGAA 3 cut(s) 631, 914, 1102
TspGWI ACGGA 3 cut(s) 147, 237, 868
TspRI CASTG 1 cut(s) 906
Van91I CCANNNNNTGG 1 cut(s) 1220
VpaK11BI GGWCC 1 cut(s) 207
XceI RCATGY 1 cut(s) 769
XhoI CTCGAG 1 cut(s) 654
XmiI GTMKAC 1 cut(s) 770
XspI CTAG 3 cut(s) 611, 1193, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.