Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013329

Physical Location & Seq

Genomic Coordinates Reverse (-)

51137644 .. 51140678

Gene Structure 3035 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG367100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGGCTACAACTTCTCTGCTTCCCAAATCCCTCTCACCATTTCTCACAAACACACCATCATTCCCCTCAACTCGCTTCACCAAGCTCTCATTCTTGAACCCGTTAGATCACCCCCATTGCCACAAAGGACCAAACCTTCACACTACACATGCCAAGAAGAAGAACCCATGGCTTGATCCCTTTGATGATGGAGCAGACCCCGACATGGAATATGGCTCTCTTTTTGTCGATGGGAAGCAAGATGAGGACGATAGACCGCCCGAAAACCCGGATAACCCATACGGGTTTTTGAAGTTCCCAATGGGGTACAGTGTGGAAGTTGCTTCACTGGCATTGAAAGTGAGGGGGGATGTTAGGAGGTGTTGTTGTGTGGTTTCAGGTGGTGTATATGAAAATTTGCTGTTCTTTCCAGTTGTTCAACTTCTTAAGGATCGGTATCCGGGTGTTCAAGTTGATATAGTGGCGTCTGCTAGAGGGAAGCAGACTTATGAGTTGAATAAAAATGTGAGATGGGCTGATGTCTATGACCCTGATGAACATTTTCCTGAACCAGCTGACTATACCGACATGGTTGGACTTCTTAAGGGTAGGTACTATGACATGGTTTTATCAACAAAGCTAGCTGGGATTGGCCATGCTTCTTTCTTGTTCATGACAACAGCCCGAGACAGAGTCAGCTATATTTATCCAAACGTAAATGCTGCAGGAGCCGGATTGTTTCTATCTGAAACATTTACACCAAATACTACGAATCTCTCCGAAGGTGGATATAACATGTATCACCAGATGGTTGATTGGTTGGCCCGGCCATCCAAGACTGTGCCACAGCAACCTGTGCCCCCACTTAAAGTATCAATCTCAAAGAAGCTAAAGCAGGTTGTAGAGTCAAAATATAAGAATGCAGGAGTAAATAAAGGAAAATATATTGTGATTCATGGGTTAGAATCAGATTCGAAAGCCTCAATGCAGTCCAAGGGGGATACTGATAGCTTGCTATCCATCCAAGTGTGGGATGCAATAGCCAGTGGTTTAAGGTATGACATTTCGTTGGATTTCCTTTCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_9

Protein Analysis

355

Amino Acids

39.56

Weight (kDa)

6.51

Isoelectric Point (pI)

28.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15980
fragaria_vesca	FvH4_6g28640 FvH4_6g28640 FvH4_6g28640
malus_domestica	MD17G1223300.v1.1
prunus_persica	Prupe.3G098200_v2.0.a1
pyrus_communis	pycom17g22730
rosa_chinensis	RchiOBHm_Chr2g0132981
rosa_laevigata	RLG00000019301
rosa_multiflora	Rmu_sc0007314.1_g000011 Rmu_sc0019447.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111580
rosa_rugosa	Rorug02G0309100
rosa_samantha	Rh2AG361300 Rh2BG367100 Rh2CG344600 Rh2DG384100
rosa_wichuraiana	Rw2G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	865
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	2 cut(s)	170, 438
AcoI	YGGCCR	2 cut(s)	631, 806
AcsI	RAATTY	1 cut(s)	394
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	2 cut(s)	308, 593
AfiI	CCNNNNNNNGG	2 cut(s)	205, 1009
AflII	CTTAAG	2 cut(s)	425, 581
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	6 cut(s)	97, 292, 337, 419, 449, 496
AjuI	GAANNNNNNNTTGG	2 cut(s)	74, 106
AluBI	AGCT	7 cut(s)	85, 554, 619, 623, 678, 868, 990
AluI	AGCT	7 cut(s)	85, 554, 619, 623, 678, 868, 990
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	170, 438
Ama87I	CYCGRG	1 cut(s)	663
AoxI	GGCC	3 cut(s)	631, 801, 806
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	1 cut(s)	394
Asp700I	GAANNNNTTC	1 cut(s)	540
AspS9I	GGNCC	2 cut(s)	128, 802
AsuC2I	CCSGG	3 cut(s)	269, 441, 805
AsuHPI	GGTGA	4 cut(s)	27, 70, 101, 773
AsuII	TTCGAA	1 cut(s)	953
AsuNHI	GCTAGC	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	663
AvaII	GGWCC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	840
BalI	TGGCCA	1 cut(s)	633
BbvI	GCAGC	1 cut(s)	688
BccI	CCATC	7 cut(s)	64, 182, 224, 504, 781, 817, 1007
BciVI	GTATCC	2 cut(s)	447, 973
BcnI	CCSGG	3 cut(s)	269, 441, 805
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	2 cut(s)	471, 620
BfmI	CTRYAG	1 cut(s)	702
BfrI	CTTAAG	2 cut(s)	425, 581
BfuAI	ACCTGC	1 cut(s)	865
BfuI	GTATCC	2 cut(s)	447, 973
BisI	GCNGC	1 cut(s)	702
BlsI	GCNGC	1 cut(s)	703
Bme1390I	CCNGG	3 cut(s)	269, 441, 805
Bme18I	GGWCC	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	663
BmgT120I	GGNCC	2 cut(s)	128, 802
BmiI	GGNNCC	1 cut(s)	709
BmrFI	CCNGG	3 cut(s)	269, 441, 805
BmsI	GCATC	1 cut(s)	1003
BmtI	GCTAGC	1 cut(s)	623
Bpu14I	TTCGAA	1 cut(s)	953
BpuMI	CCSGG	3 cut(s)	269, 441, 805
BsaBI	GATNNNNATC	1 cut(s)	435
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	2 cut(s)	167, 972
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 1009
Bse1I	ACTGG	3 cut(s)	333, 410, 1023
Bse3DI	GCAATG	1 cut(s)	115
Bse8I	GATNNNNATC	1 cut(s)	435
BseDI	CCNNGG	2 cut(s)	167, 972
BseGI	GGATG	4 cut(s)	355, 809, 999, 1018
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	2 cut(s)	205, 1009
BseMI	GCAATG	1 cut(s)	115
BseNI	ACTGG	3 cut(s)	333, 410, 1023
BseSI	GKGCMC	1 cut(s)	840
BseXI	GCAGC	1 cut(s)	688
BseYI	CCCAGC	1 cut(s)	623
BshFI	GGCC	3 cut(s)	633, 803, 808
BsiHKCI	CYCGRG	1 cut(s)	663
BsiSI	CCGG	4 cut(s)	269, 440, 711, 805
BslI	CCNNNNNNNGG	2 cut(s)	205, 1009
BsmAI	GTCTC	1 cut(s)	660
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	3 cut(s)	633, 803, 808
BsoBI	CYCGRG	1 cut(s)	663
Bsp119I	TTCGAA	1 cut(s)	953
Bsp1286I	GDGCHC	1 cut(s)	840
Bsp143I	GATC	3 cut(s)	106, 175, 430
Bsp19I	CCATGG	1 cut(s)	167
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	3 cut(s)	633, 803, 808
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	1 cut(s)	709
BspMAI	CTGCAG	1 cut(s)	706
BspMI	ACCTGC	1 cut(s)	865
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	170, 438
BspT104I	TTCGAA	1 cut(s)	953
BspTI	CTTAAG	2 cut(s)	425, 581
BsrDI	GCAATG	1 cut(s)	115
BsrI	ACTGG	3 cut(s)	333, 410, 1023
BssECI	CCNNGG	2 cut(s)	167, 972
BssMI	GATC	3 cut(s)	106, 175, 430
BssNI	GRCGYC	1 cut(s)	464
BssT1I	CCWWGG	2 cut(s)	167, 972
Bst4CI	ACNGT	2 cut(s)	311, 820
BstACI	GRCGYC	1 cut(s)	464
BstAFI	CTTAAG	2 cut(s)	425, 581
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstBI	TTCGAA	1 cut(s)	953
BstC8I	GCNNGC	2 cut(s)	621, 992
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	4 cut(s)	355, 809, 999, 1018
BstKTI	GATC	3 cut(s)	109, 178, 433
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	3 cut(s)	106, 175, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 707, 835
BstNSI	RCATGY	2 cut(s)	152, 778
BstSCI	CCNGG	3 cut(s)	267, 439, 803
BstSFI	CTRYAG	1 cut(s)	702
BstSLI	GKGCMC	1 cut(s)	840
BstV1I	GCAGC	1 cut(s)	688
BsuI	GTATCC	2 cut(s)	447, 973
BsuRI	GGCC	3 cut(s)	633, 803, 808
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	4 cut(s)	355, 809, 999, 1018
BtsIMutI	CAGTG	3 cut(s)	316, 326, 1030
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	2 cut(s)	621, 992
CciI	TCATGA	1 cut(s)	651
Cfr13I	GGNCC	2 cut(s)	128, 802
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	2 cut(s)	307, 592
CviAII	CATG	9 cut(s)	149, 168, 205, 568, 601, 635, 652, 775, 935
CviQI	GTAC	2 cut(s)	307, 592
DpnI	GATC	3 cut(s)	108, 177, 432
DpnII	GATC	3 cut(s)	106, 175, 430
EaeI	YGGCCR	2 cut(s)	631, 806
Eco130I	CCWWGG	2 cut(s)	167, 972
Eco47I	GGWCC	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	663
EcoT14I	CCWWGG	2 cut(s)	167, 972
ErhI	CCWWGG	2 cut(s)	167, 972
FaeI	CATG	9 cut(s)	152, 171, 208, 571, 604, 638, 655, 778, 938
FatI	CATG	9 cut(s)	148, 167, 204, 567, 600, 634, 651, 774, 934
Fnu4HI	GCNGC	1 cut(s)	702
FokI	GGATG	4 cut(s)	362, 796, 986, 1025
Fsp4HI	GCNGC	1 cut(s)	702
FspBI	CTAG	2 cut(s)	471, 620
GluI	GCNGC	1 cut(s)	702
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	3 cut(s)	633, 803, 808
HapII	CCGG	4 cut(s)	269, 440, 711, 805
HgaI	GACGC	1 cut(s)	453
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	9 cut(s)	152, 171, 208, 571, 604, 638, 655, 778, 938
HinfI	GANTC	6 cut(s)	672, 751, 884, 931, 944, 950
HpaII	CCGG	4 cut(s)	269, 440, 711, 805
HphI	GGTGA	4 cut(s)	27, 70, 101, 773
Hpy188I	TCNGA	3 cut(s)	727, 760, 949
Hpy188III	TCNNGA	3 cut(s)	94, 545, 652
HpyAV	CCTTC	2 cut(s)	146, 755
HpyCH4III	ACNGT	2 cut(s)	311, 820
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	4 cut(s)	704, 902, 967, 1016
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 707, 835
HpySE526I	ACGT	1 cut(s)	693
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	9 cut(s)	152, 171, 208, 571, 604, 638, 655, 778, 938
Kzo9I	GATC	3 cut(s)	106, 175, 430
LmnI	GCTCC	2 cut(s)	191, 707
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	1 cut(s)	1003
MaeI	CTAG	2 cut(s)	471, 620
MaeII	ACGT	1 cut(s)	693
MalI	GATC	3 cut(s)	108, 177, 432
MboI	GATC	3 cut(s)	106, 175, 430
MboII	GAAGA	2 cut(s)	169, 172
MhlI	GDGCHC	1 cut(s)	840
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	1 cut(s)	394
MluNI	TGGCCA	1 cut(s)	633
MlyI	GAGTC	2 cut(s)	681, 893
MmeI	TCCRAC	2 cut(s)	553, 1029
MnlI	CCTC	7 cut(s)	41, 76, 238, 336, 351, 467, 970
Mox20I	TGGCCA	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	4 cut(s)	426, 582, 846, 1031
MslI	CAYNNNNRTG	1 cut(s)	1004
Msp20I	TGGCCA	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	554
MspCI	CTTAAG	2 cut(s)	425, 581
MspI	CCGG	4 cut(s)	269, 440, 711, 805
MspR9I	CCNGG	3 cut(s)	269, 441, 805
Mva1269I	GAATGC	1 cut(s)	904
MwoI	GCNNNNNNNGC	3 cut(s)	329, 707, 835
NciI	CCSGG	3 cut(s)	269, 441, 805
NcoI	CCATGG	1 cut(s)	167
NdeII	GATC	3 cut(s)	106, 175, 430
NheI	GCTAGC	1 cut(s)	619
NlaIII	CATG	9 cut(s)	152, 171, 208, 571, 604, 638, 655, 778, 938
NlaIV	GGNNCC	1 cut(s)	709
NspI	RCATGY	2 cut(s)	152, 778
NspV	TTCGAA	1 cut(s)	953
PagI	TCATGA	1 cut(s)	651
PciI	ACATGT	1 cut(s)	774
PctI	GAATGC	1 cut(s)	904
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	4 cut(s)	751, 931, 944, 950
PflFI	GACNNNGTC	1 cut(s)	671
PkrI	GCNGC	1 cut(s)	703
PleI	GAGTC	2 cut(s)	680, 892
PpsI	GAGTC	2 cut(s)	680, 892
PscI	ACATGT	1 cut(s)	774
PspFI	CCCAGC	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	709
PspPI	GGNCC	2 cut(s)	128, 802
PstI	CTGCAG	1 cut(s)	706
PsyI	GACNNNGTC	1 cut(s)	671
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	2 cut(s)	308, 593
RsaNI	GTAC	2 cut(s)	307, 592
RseI	CAYNNNNRTG	1 cut(s)	1004
SaqAI	TTAA	4 cut(s)	426, 582, 846, 1031
SatI	GCNGC	1 cut(s)	702
Sau3AI	GATC	3 cut(s)	106, 175, 430
Sau96I	GGNCC	2 cut(s)	128, 802
SchI	GAGTC	2 cut(s)	681, 893
ScrFI	CCNGG	3 cut(s)	269, 441, 805
SduI	GDGCHC	1 cut(s)	840
SfaNI	GCATC	1 cut(s)	1003
SfcI	CTRYAG	1 cut(s)	702
SfuI	TTCGAA	1 cut(s)	953
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SmlI	CTYRAG	2 cut(s)	425, 581
SmoI	CTYRAG	2 cut(s)	425, 581
Sse9I	AATT	1 cut(s)	394
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	2 cut(s)	471, 620
StyD4I	CCNGG	3 cut(s)	267, 439, 803
StyI	CCWWGG	2 cut(s)	167, 972
TaaI	ACNGT	2 cut(s)	311, 820
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	2 cut(s)	228, 953
TasI	AATT	1 cut(s)	394
TfiI	GAWTC	4 cut(s)	751, 931, 944, 950
Tru1I	TTAA	4 cut(s)	426, 582, 846, 1031
Tru9I	TTAA	4 cut(s)	426, 582, 846, 1031
TscAI	CASTG	3 cut(s)	316, 333, 1030
TseI	GCWGC	1 cut(s)	701
TspDTI	ATGAA	5 cut(s)	405, 549, 640, 923, 1050
TspRI	CASTG	3 cut(s)	316, 333, 1030
Tth111I	GACNNNGTC	1 cut(s)	671
Vha464I	CTTAAG	2 cut(s)	425, 581
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	1 cut(s)	394
XceI	RCATGY	2 cut(s)	152, 778
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	2 cut(s)	471, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.