Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013329

Physical Location & Seq

Genomic Coordinates Reverse (-)

49951095 .. 49953663

Gene Structure 2569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000019301

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGCTACAACTTCTCTGCTTCCCAAATCCCTCTCACCATTTCTCACAAACACACCATCATTCCCTTCAACTCGCTTCACCAAGCTCTCATTCTTGAACCCGTTAGATCACCCCCATTGCCACAAAGGACCAAACCTCTACACTACACATGCCAAGAAGAAGAACCCGTGGCTTGACCCCTTTGATGATGGAGCAGACCCCGACATGGAATATGGCTCTCTTTTTGTCGATGGGAAGCAAGATGAGGACGATAGACCGCCCGAAAACCCCGATAACCCATACGGGTTTTTGAAGTTCCCAATGGGGTACAGTGTGGAAGTTGCTTCACTGGCATTGAAAGTGAGGGGGGATGTTAGGAGGTGTTGTTGTGTAGTTTCTGGTGGTGTGTATGAAAATTTGCTGTTCTTTCCAGTTGTTCAGCTTCTTAAGGATCGGTACCCTGGTGTTCAAGTTGATATAGTGGCGTCTGCTAGAGGGAAGCAAACTTATGAGTTGAATAAAAATGTGAGATGGGCTGATGTCTATGACCCTGATGAACATTTTCCTGAACCAGCTGAATATACCGACATGGTTGGACTTCTTAAGGGTAGGTACTATGACATGGTTTTATCAACAAAGCTAGCTGGGATTGGCCATGCTACTTTCTTGTTCATGACAACAGCCCGAGACAGAGTCAGCTATATTTATCCAAACGTAAATGCTGCCGGAGCCGGATTGTTTCTATCTGAAACATTTACACCAAACACTACCAATCTCTCCGAAGGTGGATATAACATGTATCACCAGATGGTTGATTGGTTGGCCCGGCCATCCAAGACTGTGCCACAGCAACCTGTGCCCCCACTTAAAGTATCAATCTCAAAGAAGCTAAAGCAGGTTGTAGAGTCAAAATATAAGAATGCAGGAGTAAATAAAGGAAAATATATTGTGATTCATGGGTTAGAATCAGATTCGAAAGCCTCAATGCAGTCTAAGGGGGATACTGATAGCTTGCTTTCCATCCAGGTGTGGGATGCAATAGCCAGTGGTTTAAGGGAATTCAGGCCACTTTTTGTTATCCCACATGAGAAAGAAAGGGAAAATGTGGAAGAAGTAGTTGGAGATGATGCCAGCATTGTGTTCATAACAACCCCTGGACAGCTCGCTGCTCTTATCAATGACTCAGCCGGTGTTATAACTACAAACACTGCAGCTATCCAACTAGCAAATGCTCGCGATAAGCCCTGCATTGCATTATTTGGCTCCGAAGAGAAAGGAAAACTCTTTATCCCTAATGCAGAACAGAAAAACTGTGTCATTGTGTCTTCCAAGAGTGGAAGATTAAAGGATATTGACATTGAAGCTGTAAAAACTGCAATTCCATTATTCAATATGTCCCTAGCTTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_9

Protein Analysis

464

Amino Acids

51.16

Weight (kDa)

6.18

Isoelectric Point (pI)

26.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15980
fragaria_vesca	FvH4_6g28640 FvH4_6g28640 FvH4_6g28640
malus_domestica	MD17G1223300.v1.1
prunus_persica	Prupe.3G098200_v2.0.a1
pyrus_communis	pycom17g22730
rosa_chinensis	RchiOBHm_Chr2g0132981
rosa_laevigata	RLG00000019301
rosa_multiflora	Rmu_sc0007314.1_g000011 Rmu_sc0019447.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111580
rosa_rugosa	Rorug02G0309100
rosa_samantha	Rh2AG361300 Rh2BG367100 Rh2CG344600 Rh2DG384100
rosa_wichuraiana	Rw2G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1175
Acc36I	ACCTGC	1 cut(s)	865
Acc65I	GGTACC	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	435
AccII	CGCG	1 cut(s)	1215
AciI	CCGC	1 cut(s)	257
AclWI	GGATC	1 cut(s)	438
AcoI	YGGCCR	2 cut(s)	631, 806
AcsI	RAATTY	2 cut(s)	394, 1037
AcyI	GRCGYC	1 cut(s)	464
AfaI	GTAC	3 cut(s)	308, 437, 593
AfiI	CCNNNNNNNGG	2 cut(s)	205, 1009
AflII	CTTAAG	2 cut(s)	425, 581
AflIII	ACRYGT	1 cut(s)	774
AgsI	TTSAA	8 cut(s)	69, 97, 292, 337, 449, 496, 1340, 1369
AjnI	CCWGG	3 cut(s)	439, 1002, 1132
AjuI	GAANNNNNNNTTGG	4 cut(s)	74, 106, 1080, 1112
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	1 cut(s)	438
Ama87I	CYCGRG	1 cut(s)	663
AoxI	GGCC	4 cut(s)	631, 801, 806, 1043
ApeKI	GCWGC	3 cut(s)	701, 1145, 1190
ApoI	RAATTY	2 cut(s)	394, 1037
Asp700I	GAANNNNTTC	1 cut(s)	540
Asp718I	GGTACC	1 cut(s)	435
AspS9I	GGNCC	2 cut(s)	128, 802
AsuC2I	CCSGG	1 cut(s)	805
AsuHPI	GGTGA	4 cut(s)	27, 70, 101, 773
AsuII	TTCGAA	1 cut(s)	953
AsuNHI	GCTAGC	1 cut(s)	619
AvaI	CYCGRG	1 cut(s)	663
AvaII	GGWCC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	840
BaeI	ACNNNNGTAYC	2 cut(s)	427, 460
BalI	TGGCCA	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	435
BbsI	GAAGAC	1 cut(s)	1296
BbvI	GCAGC	3 cut(s)	688, 1132, 1202
BccI	CCATC	7 cut(s)	64, 182, 224, 504, 781, 817, 1007
BciT130I	CCWGG	3 cut(s)	441, 1004, 1134
BciVI	GTATCC	1 cut(s)	973
BcnI	CCSGG	1 cut(s)	805
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	4 cut(s)	471, 620, 1202, 1379
BfmI	CTRYAG	1 cut(s)	1188
BfrI	CTTAAG	2 cut(s)	425, 581
BfuAI	ACCTGC	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	973
BisI	GCNGC	3 cut(s)	702, 1146, 1191
BlsI	GCNGC	3 cut(s)	703, 1147, 1192
Bme1390I	CCNGG	4 cut(s)	441, 805, 1004, 1134
Bme18I	GGWCC	1 cut(s)	128
BmeT110I	CYCGRG	1 cut(s)	663
BmgT120I	GGNCC	2 cut(s)	128, 802
BmiI	GGNNCC	3 cut(s)	437, 709, 1243
BmrFI	CCNGG	4 cut(s)	441, 805, 1004, 1134
BmsI	GCATC	2 cut(s)	1003, 1096
BmtI	GCTAGC	1 cut(s)	623
BpiI	GAAGAC	1 cut(s)	1296
Bpu14I	TTCGAA	1 cut(s)	953
BpuMI	CCSGG	1 cut(s)	805
BsaHI	GRCGYC	1 cut(s)	464
BsaJI	CCNNGG	3 cut(s)	167, 439, 1132
BsaXI	ACNNNNNCTCC	2 cut(s)	349, 379
Bsc4I	CCNNNNNNNGG	2 cut(s)	205, 1009
Bse118I	RCCGGY	1 cut(s)	1166
Bse1I	ACTGG	3 cut(s)	333, 410, 1023
Bse3DI	GCAATG	2 cut(s)	115, 1227
BseBI	CCWGG	3 cut(s)	441, 1004, 1134
BseDI	CCNNGG	3 cut(s)	167, 439, 1132
BseGI	GGATG	4 cut(s)	355, 809, 999, 1018
BseLI	CCNNNNNNNGG	2 cut(s)	205, 1009
BseMI	GCAATG	2 cut(s)	115, 1227
BseMII	CTCAG	1 cut(s)	1176
BseNI	ACTGG	3 cut(s)	333, 410, 1023
BseSI	GKGCMC	1 cut(s)	840
BseXI	GCAGC	3 cut(s)	688, 1132, 1202
BseYI	CCCAGC	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	1215
BshFI	GGCC	4 cut(s)	633, 803, 808, 1045
BshNI	GGYRCC	1 cut(s)	435
BsiHKCI	CYCGRG	1 cut(s)	663
BsiSI	CCGG	4 cut(s)	705, 711, 805, 1167
BslFI	GGGAC	1 cut(s)	1360
BslI	CCNNNNNNNGG	2 cut(s)	205, 1009
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	1360
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	4 cut(s)	633, 803, 808, 1045
BsoBI	CYCGRG	1 cut(s)	663
Bsp119I	TTCGAA	1 cut(s)	953
Bsp1286I	GDGCHC	1 cut(s)	840
Bsp143I	GATC	2 cut(s)	106, 430
Bsp68I	TCGCGA	1 cut(s)	1215
BspACI	CCGC	1 cut(s)	257
BspANI	GGCC	4 cut(s)	633, 803, 808, 1045
BspCNI	CTCAG	1 cut(s)	1175
BspFNI	CGCG	1 cut(s)	1215
BspHI	TCATGA	1 cut(s)	651
BspLI	GGNNCC	3 cut(s)	437, 709, 1243
BspMAI	CTGCAG	1 cut(s)	1192
BspMI	ACCTGC	1 cut(s)	865
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	1 cut(s)	438
BspT104I	TTCGAA	1 cut(s)	953
BspT107I	GGYRCC	1 cut(s)	435
BspTI	CTTAAG	2 cut(s)	425, 581
BsrDI	GCAATG	2 cut(s)	115, 1227
BsrFI	RCCGGY	1 cut(s)	1166
BsrI	ACTGG	3 cut(s)	333, 410, 1023
BssAI	RCCGGY	1 cut(s)	1166
BssECI	CCNNGG	3 cut(s)	167, 439, 1132
BssMI	GATC	2 cut(s)	106, 430
BssNI	GRCGYC	1 cut(s)	464
Bst2UI	CCWGG	3 cut(s)	441, 1004, 1134
Bst4CI	ACNGT	3 cut(s)	311, 820, 1292
Bst6I	CTCTTC	1 cut(s)	1242
BstACI	GRCGYC	1 cut(s)	464
BstAFI	CTTAAG	2 cut(s)	425, 581
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstBI	TTCGAA	1 cut(s)	953
BstC8I	GCNNGC	5 cut(s)	621, 992, 1111, 1143, 1213
BstDEI	CTNAG	2 cut(s)	972, 1162
BstDSI	CCRYGG	1 cut(s)	167
BstF5I	GGATG	4 cut(s)	355, 809, 999, 1018
BstFNI	CGCG	1 cut(s)	1215
BstKTI	GATC	2 cut(s)	109, 433
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	2 cut(s)	106, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 707, 835
BstNI	CCWGG	3 cut(s)	441, 1004, 1134
BstNSI	RCATGY	2 cut(s)	152, 778
BstSCI	CCNGG	4 cut(s)	439, 803, 1002, 1132
BstSFI	CTRYAG	1 cut(s)	1188
BstSLI	GKGCMC	1 cut(s)	840
BstUI	CGCG	1 cut(s)	1215
BstV1I	GCAGC	3 cut(s)	688, 1132, 1202
BstV2I	GAAGAC	1 cut(s)	1296
BsuI	GTATCC	1 cut(s)	973
BsuRI	GGCC	4 cut(s)	633, 803, 808, 1045
BtgI	CCRYGG	1 cut(s)	167
BtsCI	GGATG	4 cut(s)	355, 809, 999, 1018
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	4 cut(s)	316, 326, 1030, 1185
BtuMI	TCGCGA	1 cut(s)	1215
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	5 cut(s)	621, 992, 1111, 1143, 1213
CciI	TCATGA	1 cut(s)	651
Cfr10I	RCCGGY	1 cut(s)	1166
Cfr13I	GGNCC	2 cut(s)	128, 802
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	3 cut(s)	307, 436, 592
CviAII	CATG	9 cut(s)	149, 205, 568, 601, 635, 652, 775, 935, 1064
CviQI	GTAC	3 cut(s)	307, 436, 592
DdeI	CTNAG	2 cut(s)	972, 1162
DpnI	GATC	2 cut(s)	108, 432
DpnII	GATC	2 cut(s)	106, 430
EaeI	YGGCCR	2 cut(s)	631, 806
Eam1104I	CTCTTC	1 cut(s)	1242
EarI	CTCTTC	1 cut(s)	1242
Eco47I	GGWCC	1 cut(s)	128
Eco88I	CYCGRG	1 cut(s)	663
EcoRI	GAATTC	1 cut(s)	1037
EcoRII	CCWGG	3 cut(s)	439, 1002, 1132
FaeI	CATG	9 cut(s)	152, 208, 571, 604, 638, 655, 778, 938, 1067
FaqI	GGGAC	1 cut(s)	1360
FatI	CATG	9 cut(s)	148, 204, 567, 600, 634, 651, 774, 934, 1063
Fnu4HI	GCNGC	3 cut(s)	702, 1146, 1191
FokI	GGATG	4 cut(s)	362, 796, 986, 1025
Fsp4HI	GCNGC	3 cut(s)	702, 1146, 1191
FspBI	CTAG	4 cut(s)	471, 620, 1202, 1379
GluI	GCNGC	3 cut(s)	702, 1146, 1191
GsaI	CCCAGC	1 cut(s)	627
HaeIII	GGCC	4 cut(s)	633, 803, 808, 1045
HapII	CCGG	4 cut(s)	705, 711, 805, 1167
HgaI	GACGC	1 cut(s)	453
Hin1I	GRCGYC	1 cut(s)	464
Hin1II	CATG	9 cut(s)	152, 208, 571, 604, 638, 655, 778, 938, 1067
HinfI	GANTC	6 cut(s)	672, 884, 931, 944, 950, 1160
HpaII	CCGG	4 cut(s)	705, 711, 805, 1167
HphI	GGTGA	4 cut(s)	27, 70, 101, 773
Hpy188I	TCNGA	4 cut(s)	727, 760, 949, 1246
Hpy188III	TCNNGA	4 cut(s)	94, 545, 652, 1214
HpyAV	CCTTC	2 cut(s)	75, 755
HpyCH4III	ACNGT	3 cut(s)	311, 820, 1292
HpyCH4IV	ACGT	1 cut(s)	693
HpyCH4V	TGCA	8 cut(s)	902, 967, 1016, 1190, 1227, 1232, 1277, 1355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 707, 835
HpyF3I	CTNAG	2 cut(s)	972, 1162
HpySE526I	ACGT	1 cut(s)	693
Hsp92I	GRCGYC	1 cut(s)	464
Hsp92II	CATG	9 cut(s)	152, 208, 571, 604, 638, 655, 778, 938, 1067
KpnI	GGTACC	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	106, 430
LmnI	GCTCC	3 cut(s)	191, 707, 1247
Lsp1109I	GCAGC	3 cut(s)	688, 1132, 1202
LweI	GCATC	2 cut(s)	1003, 1096
MaeI	CTAG	4 cut(s)	471, 620, 1202, 1379
MaeII	ACGT	1 cut(s)	693
MalI	GATC	2 cut(s)	108, 432
MboI	GATC	2 cut(s)	106, 430
MboII	GAAGA	6 cut(s)	169, 172, 1100, 1259, 1296, 1329
MhlI	GDGCHC	1 cut(s)	840
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	3 cut(s)	394, 1037, 1356
MluNI	TGGCCA	1 cut(s)	633
MlyI	GAGTC	3 cut(s)	681, 893, 1154
MmeI	TCCRAC	3 cut(s)	553, 1078, 1222
MnlI	CCTC	7 cut(s)	41, 146, 238, 336, 351, 467, 970
Mox20I	TGGCCA	1 cut(s)	633
MroXI	GAANNNNTTC	1 cut(s)	540
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	5 cut(s)	426, 582, 846, 1031, 1322
MslI	CAYNNNNRTG	1 cut(s)	1004
Msp20I	TGGCCA	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	554
MspCI	CTTAAG	2 cut(s)	425, 581
MspI	CCGG	4 cut(s)	705, 711, 805, 1167
MspR9I	CCNGG	4 cut(s)	441, 805, 1004, 1134
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	3 cut(s)	441, 1004, 1134
MvnI	CGCG	1 cut(s)	1215
MwoI	GCNNNNNNNGC	3 cut(s)	329, 707, 835
NciI	CCSGG	1 cut(s)	805
NdeII	GATC	2 cut(s)	106, 430
NheI	GCTAGC	1 cut(s)	619
NlaIII	CATG	9 cut(s)	152, 208, 571, 604, 638, 655, 778, 938, 1067
NlaIV	GGNNCC	3 cut(s)	437, 709, 1243
NruI	TCGCGA	1 cut(s)	1215
NspI	RCATGY	2 cut(s)	152, 778
NspV	TTCGAA	1 cut(s)	953
PagI	TCATGA	1 cut(s)	651
PciI	ACATGT	1 cut(s)	774
PctI	GAATGC	1 cut(s)	904
PdmI	GAANNNNTTC	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	931, 944, 950
PflFI	GACNNNGTC	1 cut(s)	671
PkrI	GCNGC	3 cut(s)	703, 1147, 1192
PleI	GAGTC	3 cut(s)	680, 892, 1154
PpsI	GAGTC	3 cut(s)	680, 892, 1154
PscI	ACATGT	1 cut(s)	774
PsiI	TTATAA	1 cut(s)	1175
Psp6I	CCWGG	3 cut(s)	439, 1002, 1132
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	3 cut(s)	439, 1002, 1132
PspN4I	GGNNCC	3 cut(s)	437, 709, 1243
PspPI	GGNCC	2 cut(s)	128, 802
PstI	CTGCAG	1 cut(s)	1192
PsyI	GACNNNGTC	1 cut(s)	671
PvuII	CAGCTG	1 cut(s)	554
RruI	TCGCGA	1 cut(s)	1215
RsaI	GTAC	3 cut(s)	308, 437, 593
RsaNI	GTAC	3 cut(s)	307, 436, 592
RseI	CAYNNNNRTG	1 cut(s)	1004
SaqAI	TTAA	5 cut(s)	426, 582, 846, 1031, 1322
SatI	GCNGC	3 cut(s)	702, 1146, 1191
Sau3AI	GATC	2 cut(s)	106, 430
Sau96I	GGNCC	2 cut(s)	128, 802
SchI	GAGTC	3 cut(s)	681, 893, 1154
ScrFI	CCNGG	4 cut(s)	441, 805, 1004, 1134
SduI	GDGCHC	1 cut(s)	840
SfaNI	GCATC	2 cut(s)	1003, 1096
SfcI	CTRYAG	1 cut(s)	1188
SfuI	TTCGAA	1 cut(s)	953
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SmlI	CTYRAG	2 cut(s)	425, 581
SmoI	CTYRAG	2 cut(s)	425, 581
Sse9I	AATT	3 cut(s)	394, 1037, 1356
SsiI	CCGC	1 cut(s)	257
SspMI	CTAG	4 cut(s)	471, 620, 1202, 1379
StyD4I	CCNGG	4 cut(s)	439, 803, 1002, 1132
TaaI	ACNGT	3 cut(s)	311, 820, 1292
TaiI	ACGT	1 cut(s)	696
TaqI	TCGA	2 cut(s)	228, 953
TasI	AATT	3 cut(s)	394, 1037, 1356
TfiI	GAWTC	3 cut(s)	931, 944, 950
Tru1I	TTAA	5 cut(s)	426, 582, 846, 1031, 1322
Tru9I	TTAA	5 cut(s)	426, 582, 846, 1031, 1322
TscAI	CASTG	4 cut(s)	316, 333, 1030, 1192
TseI	GCWGC	3 cut(s)	701, 1145, 1190
TspDTI	ATGAA	5 cut(s)	405, 549, 640, 923, 1111
TspRI	CASTG	4 cut(s)	316, 333, 1030, 1192
Tth111I	GACNNNGTC	1 cut(s)	671
Vha464I	CTTAAG	2 cut(s)	425, 581
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	2 cut(s)	394, 1037
XceI	RCATGY	2 cut(s)	152, 778
XmnI	GAANNNNTTC	1 cut(s)	540
XspI	CTAG	4 cut(s)	471, 620, 1202, 1379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.