Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0013329

Physical Location & Seq

Genomic Coordinates Forward (+)

35391792 .. 35392565

Gene Structure 774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0309100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGGCCTTATGGGTTAGAATTTGTGGGTTGCCTGTTAAGTATTTCAAGGATTATACTGTTGCTAAAATTGGCAAGATTTTGGGAGATGTGGTTAAGGTTGATCAGGTTACTATTGGCCAAGCTAGAGGAAAATTTGCTCGAGTCTGTGTTGAAGTCGATCTAAGTAAACCATTGCGCCCTTTCGTGGAAGTGGAATCTGTGGCCTACAATGTGGTGTATGAAGGAATTTCTCTTATTTGTTTTGAATGTGGATGTTTTGGTCATGCCAAAGATAAGTGCCCTTTTGTGCATATTGAGCCTAATATTCCTACTCAACCTCAGGACTCTTGCATCAACATTGAGGATCAAGTTATGGCCTCTACAGAAAAGGCTGATCTGCAGCATGTGTTGGACACTTCTAAAGTTCAAATTGTTGTTATTAAAGAAGATATGGGGCCATGGATGTTGATGAACTACAGGAATAAAAAGAAAACCAGTGATACTGGGGGAGTTAAGAGAAATGCGAATAAGGGTTCTAGATTTGCAGTTTTACAAGAGCAGGATGCAATTACTGAAGATGAACCTAAGACCATTGATGACAATTCTGCAAAGACATCAACTCCTTCTATAGTAAAATTGTGGACAGGCTTCCAAGATAAGAAGAAGAATTTGAACAAGGCCAATTCCACTATGACTGGTACTTCATCAGTTTTCAATGATTCTGGAGTTGGTAGTTCTGCTTCAGGGGCTATGAATGCTGCTCCTAGAGTTCCAATGCGCGCAAGATGTCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_9

Protein Analysis

257

Amino Acids

28.26

Weight (kDa)

8.7

Isoelectric Point (pI)

41.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15980
fragaria_vesca	FvH4_6g28640 FvH4_6g28640 FvH4_6g28640
malus_domestica	MD17G1223300.v1.1
prunus_persica	Prupe.3G098200_v2.0.a1
pyrus_communis	pycom17g22730
rosa_chinensis	RchiOBHm_Chr2g0132981
rosa_laevigata	RLG00000019301
rosa_multiflora	Rmu_sc0007314.1_g000011 Rmu_sc0019447.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111580
rosa_rugosa	Rorug02G0309100
rosa_samantha	Rh2AG361300 Rh2BG367100 Rh2CG344600 Rh2DG384100
rosa_wichuraiana	Rw2G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	759
AclWI	GGATC	1 cut(s)	351
AcoI	YGGCCR	1 cut(s)	115
AcsI	RAATTY	4 cut(s)	18, 131, 225, 646
AcuI	CTGAAG	2 cut(s)	573, 705
AfaI	GTAC	1 cut(s)	679
AfiI	CCNNNNNNNGG	1 cut(s)	184
AgsI	TTSAA	6 cut(s)	46, 152, 245, 407, 652, 694
AluBI	AGCT	1 cut(s)	122
AluI	AGCT	1 cut(s)	122
AlwI	GGATC	1 cut(s)	351
Ama87I	CYCGRG	1 cut(s)	138
AoxI	GGCC	6 cut(s)	3, 115, 201, 354, 434, 657
ApeKI	GCWGC	2 cut(s)	379, 737
ApoI	RAATTY	4 cut(s)	18, 131, 225, 646
AspLEI	GCGC	3 cut(s)	177, 759, 761
AspS9I	GGNCC	1 cut(s)	434
AvaI	CYCGRG	1 cut(s)	138
AxyI	CCTNAGG	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	281
BalI	TGGCCA	1 cut(s)	117
BarI	GAAGNNNNNNTAC	2 cut(s)	703, 735
BbvI	GCAGC	2 cut(s)	391, 724
BclI	TGATCA	1 cut(s)	100
BfaI	CTAG	3 cut(s)	123, 516, 744
BfmI	CTRYAG	4 cut(s)	360, 377, 454, 606
BisI	GCNGC	2 cut(s)	380, 738
BlsI	GCNGC	2 cut(s)	381, 739
BmeT110I	CYCGRG	1 cut(s)	138
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	435
BmrI	ACTGGG	1 cut(s)	492
BmsI	GCATC	2 cut(s)	339, 532
BmuI	ACTGGG	1 cut(s)	492
BpmI	CTGGAG	1 cut(s)	723
BsaJI	CCNNGG	1 cut(s)	437
BsaXI	ACNNNNNCTCC	4 cut(s)	75, 105, 583, 613
Bsc4I	CCNNNNNNNGG	1 cut(s)	184
Bse1I	ACTGG	3 cut(s)	474, 487, 679
Bse21I	CCTNAGG	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	170
BseDI	CCNNGG	1 cut(s)	437
BseGI	GGATG	3 cut(s)	257, 447, 547
BseLI	CCNNNNNNNGG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	332
BseNI	ACTGG	3 cut(s)	474, 487, 679
BsePI	GCGCGC	1 cut(s)	757
BseSI	GKGCMC	1 cut(s)	281
BseXI	GCAGC	2 cut(s)	391, 724
Bsh1236I	CGCG	1 cut(s)	759
BshFI	GGCC	6 cut(s)	5, 117, 203, 356, 436, 659
BsiHKCI	CYCGRG	1 cut(s)	138
BslI	CCNNNNNNNGG	1 cut(s)	184
BsmI	GAATGC	1 cut(s)	739
BsnI	GGCC	6 cut(s)	5, 117, 203, 356, 436, 659
BsoBI	CYCGRG	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	281
Bsp143I	GATC	4 cut(s)	100, 157, 343, 373
Bsp19I	CCATGG	1 cut(s)	437
BspANI	GGCC	6 cut(s)	5, 117, 203, 356, 436, 659
BspCNI	CTCAG	1 cut(s)	331
BspFNI	CGCG	1 cut(s)	759
BspLI	GGNNCC	1 cut(s)	435
BspMAI	CTGCAG	1 cut(s)	381
BspPI	GGATC	1 cut(s)	351
BsrDI	GCAATG	1 cut(s)	170
BsrI	ACTGG	3 cut(s)	474, 487, 679
BssECI	CCNNGG	1 cut(s)	437
BssHII	GCGCGC	1 cut(s)	757
BssMI	GATC	4 cut(s)	100, 157, 343, 373
BssT1I	CCWWGG	1 cut(s)	437
Bst4CI	ACNGT	1 cut(s)	58
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	3 cut(s)	161, 318, 564
BstDSI	CCRYGG	1 cut(s)	437
BstF5I	GGATG	3 cut(s)	257, 447, 547
BstFNI	CGCG	1 cut(s)	759
BstHHI	GCGC	3 cut(s)	177, 759, 761
BstKTI	GATC	4 cut(s)	103, 160, 346, 376
BstMBI	GATC	4 cut(s)	100, 157, 343, 373
BstMWI	GCNNNNNNNGC	3 cut(s)	295, 725, 734
BstNSI	RCATGY	1 cut(s)	386
BstSFI	CTRYAG	4 cut(s)	360, 377, 454, 606
BstSLI	GKGCMC	1 cut(s)	281
BstUI	CGCG	1 cut(s)	759
BstV1I	GCAGC	2 cut(s)	391, 724
Bsu36I	CCTNAGG	1 cut(s)	318
BsuRI	GGCC	6 cut(s)	5, 117, 203, 356, 436, 659
BtgI	CCRYGG	1 cut(s)	437
BtsCI	GGATG	3 cut(s)	257, 447, 547
BtsIMutI	CAGTG	1 cut(s)	481
Cac8I	GCNNGC	1 cut(s)	759
CfoI	GCGC	3 cut(s)	177, 759, 761
Cfr13I	GGNCC	1 cut(s)	434
Csp6I	GTAC	1 cut(s)	678
CviAII	CATG	3 cut(s)	263, 383, 438
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	3 cut(s)	161, 318, 564
DpnI	GATC	4 cut(s)	102, 159, 345, 375
DpnII	GATC	4 cut(s)	100, 157, 343, 373
EaeI	YGGCCR	1 cut(s)	115
Eco130I	CCWWGG	1 cut(s)	437
Eco57I	CTGAAG	2 cut(s)	573, 705
Eco81I	CCTNAGG	1 cut(s)	318
Eco88I	CYCGRG	1 cut(s)	138
EcoT14I	CCWWGG	1 cut(s)	437
ErhI	CCWWGG	1 cut(s)	437
FaeI	CATG	3 cut(s)	266, 386, 441
FatI	CATG	3 cut(s)	262, 382, 437
FbaI	TGATCA	1 cut(s)	100
Fnu4HI	GCNGC	2 cut(s)	380, 738
FokI	GGATG	3 cut(s)	264, 454, 554
Fsp4HI	GCNGC	2 cut(s)	380, 738
FspBI	CTAG	3 cut(s)	123, 516, 744
GlaI	GCGC	3 cut(s)	176, 758, 760
GluI	GCNGC	2 cut(s)	380, 738
GsuI	CTGGAG	1 cut(s)	723
HaeIII	GGCC	6 cut(s)	5, 117, 203, 356, 436, 659
HhaI	GCGC	3 cut(s)	177, 759, 761
Hin1II	CATG	3 cut(s)	266, 386, 441
Hin6I	GCGC	3 cut(s)	175, 757, 759
HinP1I	GCGC	3 cut(s)	175, 757, 759
HinfI	GANTC	4 cut(s)	141, 194, 323, 698
Hpy166II	GTNNAC	2 cut(s)	167, 621
Hpy188III	TCNNGA	3 cut(s)	320, 516, 702
Hpy8I	GTNNAC	2 cut(s)	167, 621
HpyAV	CCTTC	2 cut(s)	215, 612
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	6 cut(s)	289, 330, 379, 524, 545, 587
HpyF10VI	GCNNNNNNNGC	3 cut(s)	295, 725, 734
HpyF3I	CTNAG	3 cut(s)	161, 318, 564
Hsp92II	CATG	3 cut(s)	266, 386, 441
HspAI	GCGC	3 cut(s)	175, 757, 759
Ksp22I	TGATCA	1 cut(s)	100
Kzo9I	GATC	4 cut(s)	100, 157, 343, 373
LmnI	GCTCC	1 cut(s)	745
Lsp1109I	GCAGC	2 cut(s)	391, 724
LweI	GCATC	2 cut(s)	339, 532
MaeI	CTAG	3 cut(s)	123, 516, 744
MaeIII	GTNAC	1 cut(s)	106
MalI	GATC	4 cut(s)	102, 159, 345, 375
MboI	GATC	4 cut(s)	100, 157, 343, 373
MboII	GAAGA	4 cut(s)	437, 566, 652, 655
MhlI	GDGCHC	1 cut(s)	281
MlsI	TGGCCA	1 cut(s)	117
MluNI	TGGCCA	1 cut(s)	117
MlyI	GAGTC	2 cut(s)	150, 317
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	119, 327, 334, 367
Mox20I	TGGCCA	1 cut(s)	117
MscI	TGGCCA	1 cut(s)	117
MseI	TTAA	4 cut(s)	36, 93, 420, 492
Msp20I	TGGCCA	1 cut(s)	117
Mva1269I	GAATGC	1 cut(s)	739
MvnI	CGCG	1 cut(s)	759
MwoI	GCNNNNNNNGC	3 cut(s)	295, 725, 734
NcoI	CCATGG	1 cut(s)	437
NdeII	GATC	4 cut(s)	100, 157, 343, 373
NlaIII	CATG	3 cut(s)	266, 386, 441
NlaIV	GGNNCC	1 cut(s)	435
NspI	RCATGY	1 cut(s)	386
PaeR7I	CTCGAG	1 cut(s)	138
PauI	GCGCGC	1 cut(s)	757
PctI	GAATGC	1 cut(s)	739
PfeI	GAWTC	2 cut(s)	194, 698
PkrI	GCNGC	2 cut(s)	381, 739
PleI	GAGTC	2 cut(s)	149, 317
PpsI	GAGTC	2 cut(s)	149, 317
PspN4I	GGNNCC	1 cut(s)	435
PspPI	GGNCC	1 cut(s)	434
PspXI	VCTCGAGB	1 cut(s)	138
PstI	CTGCAG	1 cut(s)	381
PteI	GCGCGC	1 cut(s)	757
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
SaqAI	TTAA	4 cut(s)	36, 93, 420, 492
SatI	GCNGC	2 cut(s)	380, 738
Sau3AI	GATC	4 cut(s)	100, 157, 343, 373
Sau96I	GGNCC	1 cut(s)	434
SchI	GAGTC	2 cut(s)	150, 317
SduI	GDGCHC	1 cut(s)	281
SetI	ASST	5 cut(s)	99, 108, 124, 319, 565
SfaNI	GCATC	2 cut(s)	339, 532
SfcI	CTRYAG	4 cut(s)	360, 377, 454, 606
Sfr274I	CTCGAG	1 cut(s)	138
SlaI	CTCGAG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	138
SmoI	CTYRAG	1 cut(s)	138
SspI	AATATT	1 cut(s)	304
SspMI	CTAG	3 cut(s)	123, 516, 744
StyI	CCWWGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	2 cut(s)	139, 156
TfiI	GAWTC	2 cut(s)	194, 698
Tru1I	TTAA	4 cut(s)	36, 93, 420, 492
Tru9I	TTAA	4 cut(s)	36, 93, 420, 492
TscAI	CASTG	1 cut(s)	481
TseI	GCWGC	2 cut(s)	379, 737
TspDTI	ATGAA	5 cut(s)	234, 464, 573, 672, 746
TspRI	CASTG	1 cut(s)	481
XapI	RAATTY	4 cut(s)	18, 131, 225, 646
XbaI	TCTAGA	1 cut(s)	515
XceI	RCATGY	1 cut(s)	386
XhoI	CTCGAG	1 cut(s)	138
XspI	CTAG	3 cut(s)	123, 516, 744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.