Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0013329

Physical Location & Seq

Genomic Coordinates Forward (+)

36166269 .. 36179327

Gene Structure 13059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00111580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGCCTCTTCCGCACAATGGTGTTGCACTAGCTGATAAGGCGCACATCTTGAACTTGATAGTTCAAGATGGGTTGAAGGCAATTGATCCCTTTGTGATAAAAGTATGTGATTGCATCAAATATATAAAGGGTTCTTCGGCAAGAAAAGAAAGATTTTTGGGCGATTTTCAATTCGGAGAATGTCCCGAAATAACACCGAGATTGTTGATGTCAAAGGGTAGAATTGTAAAGGACGTTAAACCGAAAAAAGTGCCATCGTCGTCATATAATTTTGGTAAATATGTCGAAGGATTAAGATGTGGAAGTTGCTTCACTGGCATTGAAAGTGAGGGGGATGTTAGGAGGTGTTGTTGTGTGGTTTCTGGTGGTGTATATGAAAATTTGCTGTTCTTTCCAGTTGTTCAACTTCTTAAGGATCGGTACCCGGGTGTTCAAGTTGATATAGTGGCGTCTGCTCGAGGGAAGCAAACTTATGAGTTGAATAAAAATGTGAGATGGGCTGATGTCTATGACCCTGATGAACATTTTCCCGAACCAGCTGAATATACCGACATGGTTGGACTTCTTAAGGGTAGGTACTATGACATGGTTTTATCAACAAAGCTAGCTGGGATTGGCCATGCTGCTTTCTTGTTCATGACAACAGCCCGAGACAGAGTCAGCTATATTTATCCAAACGTAAATGCTGCAGGAGCCGGATTGTTTCTATCTGAAACATTTACACCAAATACTACGAATCTCTCCGAAGGTGGATATAACATGTATCACCAGATGGTTGATTGGTTGGCCCGGCCATCCAAGACTGTGCCACAGCAACCTGTACCCCCACTTAAAGTATCAATCTCAAAGAAGCTAAAGCAGGTTGTAGAGTCAAAATATAAGAATGCAGGAGTAAATAAAGGAAAATATATTGTGATTCATGGGTTAGAATCAGATTCGAAAGCCTCAATGCAGTCTAAGGGGGATACTGATAGCTTGCTATCCATCCAAGTGTGGGATGCAATAGCCAGTGGTTTAAGGGAATTCAGGCCACTTTTTGTTATCCCACATGAGAAAGAAAGGGAAAATGTGGAAGAAGTAGTTGGAGATGATGCCAGCATTGTGTTCATAACAACCCCTGGACAGCTCGCTGCTCTTATCAATGACTCAGCCGGTGTTATAACTACAAACACTGCAGCTATCCAACTAGCAAATGCTCGCGATAAGCCCTGCATTGCATTATTTGGCTCCGAAGAGAAAGGAAAACTCTTTATCCCTAATGCAGAACAGAAAAACTGTGTCATTGTGTCTTCCAAGACTAGAAGATTAAAGGATATTGATATTGAAGCTGTAAAAACTGCAATTCCAATATTCAATATGTCCCTAGCTTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_9

Protein Analysis

458

Amino Acids

50.5

Weight (kDa)

8.51

Isoelectric Point (pI)

32.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15980
fragaria_vesca	FvH4_6g28640 FvH4_6g28640 FvH4_6g28640
malus_domestica	MD17G1223300.v1.1
prunus_persica	Prupe.3G098200_v2.0.a1
pyrus_communis	pycom17g22730
rosa_chinensis	RchiOBHm_Chr2g0132981
rosa_laevigata	RLG00000019301
rosa_multiflora	Rmu_sc0007314.1_g000011 Rmu_sc0019447.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111580
rosa_rugosa	Rorug02G0309100
rosa_samantha	Rh2AG361300 Rh2BG367100 Rh2CG344600 Rh2DG384100
rosa_wichuraiana	Rw2G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1160
Acc36I	ACCTGC	1 cut(s)	850
Acc65I	GGTACC	1 cut(s)	420
AccB1I	GGYRCC	1 cut(s)	420
AccII	CGCG	1 cut(s)	1200
AciI	CCGC	1 cut(s)	11
AclWI	GGATC	2 cut(s)	80, 423
AcoI	YGGCCR	2 cut(s)	616, 791
AcsI	RAATTY	2 cut(s)	379, 1022
AcyI	GRCGYC	1 cut(s)	449
AfaI	GTAC	3 cut(s)	422, 578, 822
AfiI	CCNNNNNNNGG	2 cut(s)	17, 994
AflII	CTTAAG	2 cut(s)	410, 566
AflIII	ACRYGT	1 cut(s)	759
AjnI	CCWGG	1 cut(s)	1117
AjuI	GAANNNNNNNTTGG	2 cut(s)	1065, 1097
AleI	CACNNNNGTG	1 cut(s)	18
Alw26I	GTCTC	1 cut(s)	645
AlwI	GGATC	2 cut(s)	80, 423
Ama87I	CYCGRG	3 cut(s)	424, 456, 648
AoxI	GGCC	4 cut(s)	616, 786, 791, 1028
ApeKI	GCWGC	4 cut(s)	623, 686, 1130, 1175
ApoI	RAATTY	2 cut(s)	379, 1022
Asp700I	GAANNNNTTC	1 cut(s)	525
Asp718I	GGTACC	1 cut(s)	420
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	1 cut(s)	787
AsuC2I	CCSGG	3 cut(s)	425, 426, 790
AsuHPI	GGTGA	1 cut(s)	758
AsuII	TTCGAA	1 cut(s)	938
AsuNHI	GCTAGC	1 cut(s)	604
AvaI	CYCGRG	3 cut(s)	424, 456, 648
BaeI	ACNNNNGTAYC	2 cut(s)	412, 445
BalI	TGGCCA	1 cut(s)	618
BanI	GGYRCC	1 cut(s)	420
BbsI	GAAGAC	1 cut(s)	1281
BbvI	GCAGC	4 cut(s)	610, 673, 1117, 1187
BccI	CCATC	6 cut(s)	62, 262, 489, 766, 802, 992
BcgI	CGANNNNNNTGC	2 cut(s)	232, 266
BciT130I	CCWGG	1 cut(s)	1119
BciVI	GTATCC	1 cut(s)	958
BcnI	CCSGG	3 cut(s)	425, 426, 790
BcoDI	GTCTC	1 cut(s)	645
BfaI	CTAG	5 cut(s)	29, 605, 1187, 1299, 1364
BfmI	CTRYAG	2 cut(s)	687, 1173
BfrI	CTTAAG	2 cut(s)	410, 566
BfuAI	ACCTGC	1 cut(s)	850
BfuI	GTATCC	1 cut(s)	958
BisI	GCNGC	4 cut(s)	624, 687, 1131, 1176
BlsI	GCNGC	4 cut(s)	625, 688, 1132, 1177
Bme1390I	CCNGG	4 cut(s)	425, 426, 790, 1119
BmeT110I	CYCGRG	3 cut(s)	424, 456, 648
BmgT120I	GGNCC	1 cut(s)	787
BmiI	GGNNCC	3 cut(s)	422, 694, 1228
BmrFI	CCNGG	4 cut(s)	425, 426, 790, 1119
BmsI	GCATC	3 cut(s)	123, 988, 1081
BmtI	GCTAGC	1 cut(s)	608
BpiI	GAAGAC	1 cut(s)	1281
Bpu14I	TTCGAA	1 cut(s)	938
BpuMI	CCSGG	3 cut(s)	425, 426, 790
BsaHI	GRCGYC	1 cut(s)	449
BsaJI	CCNNGG	2 cut(s)	424, 1117
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 994
Bse118I	RCCGGY	1 cut(s)	1151
Bse1I	ACTGG	3 cut(s)	319, 395, 1008
Bse3DI	GCAATG	1 cut(s)	1212
BseBI	CCWGG	1 cut(s)	1119
BseDI	CCNNGG	2 cut(s)	424, 1117
BseGI	GGATG	4 cut(s)	340, 794, 984, 1003
BseLI	CCNNNNNNNGG	2 cut(s)	17, 994
BseMI	GCAATG	1 cut(s)	1212
BseMII	CTCAG	1 cut(s)	1161
BseNI	ACTGG	3 cut(s)	319, 395, 1008
BseXI	GCAGC	4 cut(s)	610, 673, 1117, 1187
BseYI	CCCAGC	1 cut(s)	608
Bsh1236I	CGCG	1 cut(s)	1200
BshFI	GGCC	4 cut(s)	618, 788, 793, 1030
BshNI	GGYRCC	1 cut(s)	420
BsiHKCI	CYCGRG	3 cut(s)	424, 456, 648
BsiSI	CCGG	4 cut(s)	425, 696, 790, 1152
BslFI	GGGAC	2 cut(s)	168, 1345
BslI	CCNNNNNNNGG	2 cut(s)	17, 994
BsmAI	GTCTC	1 cut(s)	645
BsmFI	GGGAC	2 cut(s)	168, 1345
BsmI	GAATGC	1 cut(s)	889
BsnI	GGCC	4 cut(s)	618, 788, 793, 1030
BsoBI	CYCGRG	3 cut(s)	424, 456, 648
Bsp119I	TTCGAA	1 cut(s)	938
Bsp143I	GATC	2 cut(s)	85, 415
Bsp68I	TCGCGA	1 cut(s)	1200
BspACI	CCGC	1 cut(s)	11
BspANI	GGCC	4 cut(s)	618, 788, 793, 1030
BspCNI	CTCAG	1 cut(s)	1160
BspFNI	CGCG	1 cut(s)	1200
BspHI	TCATGA	1 cut(s)	636
BspLI	GGNNCC	3 cut(s)	422, 694, 1228
BspMAI	CTGCAG	2 cut(s)	691, 1177
BspMI	ACCTGC	1 cut(s)	850
BspOI	GCTAGC	1 cut(s)	608
BspPI	GGATC	2 cut(s)	80, 423
BspT104I	TTCGAA	1 cut(s)	938
BspT107I	GGYRCC	1 cut(s)	420
BspTI	CTTAAG	2 cut(s)	410, 566
BsrDI	GCAATG	1 cut(s)	1212
BsrFI	RCCGGY	1 cut(s)	1151
BsrI	ACTGG	3 cut(s)	319, 395, 1008
BssAI	RCCGGY	1 cut(s)	1151
BssECI	CCNNGG	2 cut(s)	424, 1117
BssMI	GATC	2 cut(s)	85, 415
BssNI	GRCGYC	1 cut(s)	449
Bst2UI	CCWGG	1 cut(s)	1119
Bst4CI	ACNGT	2 cut(s)	805, 1277
Bst6I	CTCTTC	2 cut(s)	12, 1227
BstACI	GRCGYC	1 cut(s)	449
BstAFI	CTTAAG	2 cut(s)	410, 566
BstBI	TTCGAA	1 cut(s)	938
BstC8I	GCNNGC	5 cut(s)	606, 977, 1096, 1128, 1198
BstDEI	CTNAG	2 cut(s)	957, 1147
BstF5I	GGATG	4 cut(s)	340, 794, 984, 1003
BstFNI	CGCG	1 cut(s)	1200
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	2 cut(s)	88, 418
BstMAI	GTCTC	1 cut(s)	645
BstMBI	GATC	2 cut(s)	85, 415
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 38, 315, 692
BstNI	CCWGG	1 cut(s)	1119
BstNSI	RCATGY	1 cut(s)	763
BstSCI	CCNGG	4 cut(s)	423, 424, 788, 1117
BstSFI	CTRYAG	2 cut(s)	687, 1173
BstUI	CGCG	1 cut(s)	1200
BstV1I	GCAGC	4 cut(s)	610, 673, 1117, 1187
BstV2I	GAAGAC	1 cut(s)	1281
BsuI	GTATCC	1 cut(s)	958
BsuRI	GGCC	4 cut(s)	618, 788, 793, 1030
BtsCI	GGATG	4 cut(s)	340, 794, 984, 1003
BtsI	GCAGTG	1 cut(s)	1170
BtsIMutI	CAGTG	3 cut(s)	312, 1015, 1170
BtuMI	TCGCGA	1 cut(s)	1200
BveI	ACCTGC	1 cut(s)	850
Cac8I	GCNNGC	5 cut(s)	606, 977, 1096, 1128, 1198
CciI	TCATGA	1 cut(s)	636
CfoI	GCGC	1 cut(s)	43
Cfr10I	RCCGGY	1 cut(s)	1151
Cfr13I	GGNCC	1 cut(s)	787
Cfr9I	CCCGGG	1 cut(s)	424
CseI	GACGC	1 cut(s)	438
Csp6I	GTAC	3 cut(s)	421, 577, 821
CviAII	CATG	7 cut(s)	553, 586, 620, 637, 760, 920, 1049
CviQI	GTAC	3 cut(s)	421, 577, 821
DdeI	CTNAG	2 cut(s)	957, 1147
DpnI	GATC	2 cut(s)	87, 417
DpnII	GATC	2 cut(s)	85, 415
EaeI	YGGCCR	2 cut(s)	616, 791
Eam1104I	CTCTTC	2 cut(s)	12, 1227
EarI	CTCTTC	2 cut(s)	12, 1227
Eco88I	CYCGRG	3 cut(s)	424, 456, 648
EcoRI	GAATTC	1 cut(s)	1022
EcoRII	CCWGG	1 cut(s)	1117
FaeI	CATG	7 cut(s)	556, 589, 623, 640, 763, 923, 1052
FaqI	GGGAC	2 cut(s)	168, 1345
FatI	CATG	7 cut(s)	552, 585, 619, 636, 759, 919, 1048
Fnu4HI	GCNGC	4 cut(s)	624, 687, 1131, 1176
FokI	GGATG	4 cut(s)	347, 781, 971, 1010
Fsp4HI	GCNGC	4 cut(s)	624, 687, 1131, 1176
FspBI	CTAG	5 cut(s)	29, 605, 1187, 1299, 1364
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	4 cut(s)	624, 687, 1131, 1176
GsaI	CCCAGC	1 cut(s)	612
HaeIII	GGCC	4 cut(s)	618, 788, 793, 1030
HapII	CCGG	4 cut(s)	425, 696, 790, 1152
HgaI	GACGC	1 cut(s)	438
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	449
Hin1II	CATG	7 cut(s)	556, 589, 623, 640, 763, 923, 1052
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	7 cut(s)	657, 736, 869, 916, 929, 935, 1145
HpaII	CCGG	4 cut(s)	425, 696, 790, 1152
HphI	GGTGA	1 cut(s)	758
Hpy188I	TCNGA	5 cut(s)	176, 712, 745, 934, 1231
Hpy188III	TCNNGA	6 cut(s)	49, 65, 185, 530, 637, 1199
Hpy99I	CGWCG	1 cut(s)	262
HpyAV	CCTTC	3 cut(s)	70, 281, 740
HpyCH4III	ACNGT	2 cut(s)	805, 1277
HpyCH4IV	ACGT	2 cut(s)	234, 678
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 38, 315, 692
HpyF3I	CTNAG	2 cut(s)	957, 1147
HpySE526I	ACGT	2 cut(s)	234, 678
Hsp92I	GRCGYC	1 cut(s)	449
Hsp92II	CATG	7 cut(s)	556, 589, 623, 640, 763, 923, 1052
HspAI	GCGC	1 cut(s)	41
KpnI	GGTACC	1 cut(s)	424
Kzo9I	GATC	2 cut(s)	85, 415
LmnI	GCTCC	2 cut(s)	692, 1232
Lsp1109I	GCAGC	4 cut(s)	610, 673, 1117, 1187
LweI	GCATC	3 cut(s)	123, 988, 1081
MaeI	CTAG	5 cut(s)	29, 605, 1187, 1299, 1364
MaeII	ACGT	2 cut(s)	234, 678
MalI	GATC	2 cut(s)	87, 417
MboI	GATC	2 cut(s)	85, 415
MboII	GAAGA	5 cut(s)	126, 1085, 1244, 1281, 1314
MfeI	CAATTG	1 cut(s)	81
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	7 cut(s)	81, 170, 222, 268, 379, 1022, 1341
MluNI	TGGCCA	1 cut(s)	618
MlyI	GAGTC	3 cut(s)	666, 878, 1139
MmeI	TCCRAC	3 cut(s)	538, 1063, 1207
MnlI	CCTC	5 cut(s)	15, 322, 336, 452, 955
Mox20I	TGGCCA	1 cut(s)	618
MroXI	GAANNNNTTC	1 cut(s)	525
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	7 cut(s)	237, 293, 411, 567, 831, 1016, 1307
MslI	CAYNNNNRTG	2 cut(s)	18, 989
Msp20I	TGGCCA	1 cut(s)	618
MspA1I	CMGCKG	1 cut(s)	539
MspCI	CTTAAG	2 cut(s)	410, 566
MspI	CCGG	4 cut(s)	425, 696, 790, 1152
MspR9I	CCNGG	4 cut(s)	425, 426, 790, 1119
MunI	CAATTG	1 cut(s)	81
Mva1269I	GAATGC	1 cut(s)	889
MvaI	CCWGG	1 cut(s)	1119
MvnI	CGCG	1 cut(s)	1200
MwoI	GCNNNNNNNGC	4 cut(s)	10, 38, 315, 692
NciI	CCSGG	3 cut(s)	425, 426, 790
NdeII	GATC	2 cut(s)	85, 415
NheI	GCTAGC	1 cut(s)	604
NlaIII	CATG	7 cut(s)	556, 589, 623, 640, 763, 923, 1052
NlaIV	GGNNCC	3 cut(s)	422, 694, 1228
NruI	TCGCGA	1 cut(s)	1200
NspI	RCATGY	1 cut(s)	763
NspV	TTCGAA	1 cut(s)	938
OliI	CACNNNNGTG	1 cut(s)	18
PaeR7I	CTCGAG	1 cut(s)	456
PagI	TCATGA	1 cut(s)	636
PciI	ACATGT	1 cut(s)	759
PctI	GAATGC	1 cut(s)	889
PdmI	GAANNNNTTC	1 cut(s)	525
PfeI	GAWTC	4 cut(s)	736, 916, 929, 935
PflFI	GACNNNGTC	1 cut(s)	656
PkrI	GCNGC	4 cut(s)	625, 688, 1132, 1177
PleI	GAGTC	3 cut(s)	665, 877, 1139
PpsI	GAGTC	3 cut(s)	665, 877, 1139
PscI	ACATGT	1 cut(s)	759
PsiI	TTATAA	1 cut(s)	1160
Psp6I	CCWGG	1 cut(s)	1117
PspFI	CCCAGC	1 cut(s)	608
PspGI	CCWGG	1 cut(s)	1117
PspN4I	GGNNCC	3 cut(s)	422, 694, 1228
PspPI	GGNCC	1 cut(s)	787
PspXI	VCTCGAGB	1 cut(s)	456
PstI	CTGCAG	2 cut(s)	691, 1177
PsyI	GACNNNGTC	1 cut(s)	656
PvuII	CAGCTG	1 cut(s)	539
RruI	TCGCGA	1 cut(s)	1200
RsaI	GTAC	3 cut(s)	422, 578, 822
RsaNI	GTAC	3 cut(s)	421, 577, 821
RseI	CAYNNNNRTG	2 cut(s)	18, 989
SaqAI	TTAA	7 cut(s)	237, 293, 411, 567, 831, 1016, 1307
SatI	GCNGC	4 cut(s)	624, 687, 1131, 1176
Sau3AI	GATC	2 cut(s)	85, 415
Sau96I	GGNCC	1 cut(s)	787
SchI	GAGTC	3 cut(s)	666, 878, 1139
ScrFI	CCNGG	4 cut(s)	425, 426, 790, 1119
SfaNI	GCATC	3 cut(s)	123, 988, 1081
SfcI	CTRYAG	2 cut(s)	687, 1173
Sfr274I	CTCGAG	1 cut(s)	456
SfuI	TTCGAA	1 cut(s)	938
SlaI	CTCGAG	1 cut(s)	456
SmaI	CCCGGG	1 cut(s)	426
SmiMI	CAYNNNNRTG	2 cut(s)	18, 989
SmlI	CTYRAG	3 cut(s)	410, 456, 566
SmoI	CTYRAG	3 cut(s)	410, 456, 566
Sse9I	AATT	7 cut(s)	81, 170, 222, 268, 379, 1022, 1341
SsiI	CCGC	1 cut(s)	11
SspI	AATATT	1 cut(s)	1350
SspMI	CTAG	5 cut(s)	29, 605, 1187, 1299, 1364
StyD4I	CCNGG	4 cut(s)	423, 424, 788, 1117
TaaI	ACNGT	2 cut(s)	805, 1277
TaiI	ACGT	2 cut(s)	237, 681
TaqI	TCGA	3 cut(s)	285, 457, 938
TasI	AATT	7 cut(s)	81, 170, 222, 268, 379, 1022, 1341
TfiI	GAWTC	4 cut(s)	736, 916, 929, 935
Tru1I	TTAA	7 cut(s)	237, 293, 411, 567, 831, 1016, 1307
Tru9I	TTAA	7 cut(s)	237, 293, 411, 567, 831, 1016, 1307
TscAI	CASTG	3 cut(s)	319, 1015, 1177
TseI	GCWGC	4 cut(s)	623, 686, 1130, 1175
TspDTI	ATGAA	5 cut(s)	390, 534, 625, 908, 1096
TspMI	CCCGGG	1 cut(s)	424
TspRI	CASTG	3 cut(s)	319, 1015, 1177
Tth111I	GACNNNGTC	1 cut(s)	656
Vha464I	CTTAAG	2 cut(s)	410, 566
XapI	RAATTY	2 cut(s)	379, 1022
XceI	RCATGY	1 cut(s)	763
XhoI	CTCGAG	1 cut(s)	456
XmaI	CCCGGG	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	525
XspI	CTAG	5 cut(s)	29, 605, 1187, 1299, 1364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.