Prupe.3G098200_v2.0.a1

Photosynthetic NDH subunit of subcomplex B 1, chloroplastic

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
7525407 .. 7529296
3890 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G098200.1

Sequence Viewer

Length: 1395 bp
ATGGCCACTACAGCATCTCTGCTTCCCAAACCCCCCTCACCATTTCTCACCAACACACGTTCATTCCCTTCAACACATTTCACCAAGCTCTCATTTTTCAGCCCATCAGACCACCCCCATTGCACAAAAAGGCAAAACCTTCAGACACATGCCAAAAAGAAGAACCCCTGGCGTGACCCTTTTGATGATGGAGAGGACCCAGACATGGGGTATGGCTCTCTTTTTTCAGAGGGGAAGCAGGAAGAGGATGACAGACCGCCCGAAAACCTGGATAATCCATACGGGTTCTTGAAGTTCCCAATGGGGTATAGTGTGGAAATTGCATCATTGGCTTTGAAAGTGAGGGGGGATGTTAGGAGGTGTTGTTGTGTGGTTTCTGGTGGTGTGTATGAGAACTTGCTGTTTTTTCCGGTTATCCAGCTTATCAAGGATCGGTACCCGGGTGTGCAAGTGGATGTAGTGGCGTCTGCCAGAGGGAAGCAAGCTTATGAGTTGAATAAGAATGTGAGATGGGCTGATGTCTATGATCCTGATGATCATTTTCCTGAGCCTGCTGAGTACACTGACATGGTTGGACTTCTTAAGAATAGGTATTATGACATGATCTTATCAACCAAGCTAGCAGGGATCGGACACGGAATATTCTTGTTCATGACAACAGCCCGAGAACGGGTGAGCTATATTTATCCAAATGTAAATGCTGCAGGAGCTGGATTGTTTCTATCTGAAACATTTACACCAAATAGCATGAATCTCTCTGAAGGCGGATATCACATGTATCACCAGATGGTTGATTGGTTGGGTAGACCGGTGCGGGATGTGCCACGGCAACCTCTGCCGCCACTTAAAGTATCAATCTCAAAGAAGCTAAAGCAGTTTGTAGAGTCCAAATATCAGAATGCAGGTGTAAGTAAAGGAAAATATATTGTGATTCATGGGTTGGAATCGGATTCGAAAGCCTCAATGCAGTCTAAGGGGGATGCTGATAGCTTACTGCCCATCCAAATGTGGGCTACAATAGCTCGTGGTATAAGGGAATTTAGGCCAGTTTTTGTCATTCCACATGAGAAAGAAAGGGAAAATGTGGAGGAAGTAGTGGGAGAAGATACCAGCATTGTGTTCATAACAACCCCTGGGCAGCTAGCTGCCCTTATCAATGACTCGGCTGGTGTAATAACCACTAACACTGCAGCTATCCAACTTGCAAATGCACGCGAAAAACCCTGCATTGCATTATTCGGTTCTGAAGAGAAAGGGAAACTATTTGTTCCCAACGCAGAAGAGAAGAAGAATTGTGTTATTGTTTCATCCAAGACCAGACAATTAAAGGATATCGACACTGAAGCTGTTAAACGCGCACTTCAAATTTTCAGTGTGTCCTTAGCTCTAGTATAA

Protein Analysis

465

Amino Acids

51.79

Weight (kDa)

7.14

Isoelectric Point (pI)

33.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0013329)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 893
Acc65I GGTACC 1 cut(s) 435
AccB1I GGYRCC 1 cut(s) 435
AccI GTMKAC 1 cut(s) 805
AccII CGCG 2 cut(s) 1215, 1356
AciI CCGC 4 cut(s) 257, 765, 814, 839
AclWI GGATC 3 cut(s) 438, 521, 635
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 2 cut(s) 1037, 1365
AcuI CTGAAG 4 cut(s) 125, 780, 1266, 1362
AcyI GRCGYC 1 cut(s) 464
AfaI GTAC 2 cut(s) 437, 560
AfiI CCNNNNNNNGG 5 cut(s) 205, 206, 669, 670, 1009
AflII CTTAAG 1 cut(s) 581
AflIII ACRYGT 2 cut(s) 56, 774
AgeI ACCGGT 1 cut(s) 808
AgsI TTSAA 5 cut(s) 72, 292, 337, 496, 1364
AjnI CCWGG 3 cut(s) 167, 267, 1132
AlwI GGATC 3 cut(s) 438, 521, 635
AlwNI CAGNNNCTG 1 cut(s) 710
Ama87I CYCGRG 2 cut(s) 439, 663
AoxI GGCC 2 cut(s) 3, 1043
ApeKI GCWGC 4 cut(s) 701, 1138, 1145, 1190
ApoI RAATTY 2 cut(s) 1037, 1365
AsiGI ACCGGT 1 cut(s) 808
Asp718I GGTACC 1 cut(s) 435
AspLEI GCGC 1 cut(s) 1358
AspS9I GGNCC 1 cut(s) 196
AsuC2I CCSGG 2 cut(s) 440, 441
AsuHPI GGTGA 5 cut(s) 30, 40, 73, 685, 773
AsuII TTCGAA 1 cut(s) 953
AsuNHI GCTAGC 2 cut(s) 619, 1141
AvaI CYCGRG 2 cut(s) 439, 663
AvaII GGWCC 1 cut(s) 196
BaeI ACNNNNGTAYC 2 cut(s) 427, 460
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 435
BauI CACGAG 1 cut(s) 1023
BbvI GCAGC 4 cut(s) 688, 1132, 1150, 1202
BccI CCATC 5 cut(s) 112, 182, 504, 781, 1007
BceAI ACGGC 1 cut(s) 842
BciT130I CCWGG 3 cut(s) 169, 269, 1134
BclI TGATCA 1 cut(s) 535
BcnI CCSGG 2 cut(s) 440, 441
BfaI CTAG 3 cut(s) 620, 1142, 1388
BfmI CTRYAG 3 cut(s) 9, 702, 1188
BfrI CTTAAG 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 893
BisI GCNGC 5 cut(s) 702, 839, 1139, 1146, 1191
BlsI GCNGC 5 cut(s) 703, 840, 1140, 1147, 1192
Bme1390I CCNGG 5 cut(s) 169, 269, 440, 441, 1134
Bme18I GGWCC 1 cut(s) 196
BmeT110I CYCGRG 2 cut(s) 439, 663
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 2 cut(s) 198, 437
BmrFI CCNGG 5 cut(s) 169, 269, 440, 441, 1134
BmsI GCATC 3 cut(s) 23, 332, 970
BmtI GCTAGC 2 cut(s) 623, 1145
Bpu10I CCTNAGC 2 cut(s) 546, 1381
Bpu14I TTCGAA 1 cut(s) 953
BpuMI CCSGG 2 cut(s) 440, 441
BsaHI GRCGYC 1 cut(s) 464
BsaJI CCNNGG 5 cut(s) 167, 439, 824, 1132, 1133
BsaWI WCCGGW 2 cut(s) 409, 808
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 5 cut(s) 205, 206, 669, 670, 1009
Bse118I RCCGGY 1 cut(s) 808
Bse1I ACTGG 1 cut(s) 1046
Bse3DI GCAATG 2 cut(s) 118, 1227
BseBI CCWGG 3 cut(s) 169, 269, 1134
BseDI CCNNGG 5 cut(s) 167, 439, 824, 1132, 1133
BseGI GGATG 7 cut(s) 253, 355, 460, 823, 985, 999, 1307
BseLI CCNNNNNNNGG 5 cut(s) 205, 206, 669, 670, 1009
BseMI GCAATG 2 cut(s) 118, 1227
BseMII CTCAG 2 cut(s) 537, 546
BseNI ACTGG 1 cut(s) 1046
BseXI GCAGC 4 cut(s) 688, 1132, 1150, 1202
Bsh1236I CGCG 2 cut(s) 1215, 1356
BshFI GGCC 2 cut(s) 5, 1045
BshNI GGYRCC 1 cut(s) 435
BshTI ACCGGT 1 cut(s) 808
BsiHKCI CYCGRG 2 cut(s) 439, 663
BsiSI CCGG 3 cut(s) 410, 440, 809
BslI CCNNNNNNNGG 5 cut(s) 205, 206, 669, 670, 1009
BsmI GAATGC 1 cut(s) 904
BsnI GGCC 2 cut(s) 5, 1045
BsoBI CYCGRG 2 cut(s) 439, 663
Bsp119I TTCGAA 1 cut(s) 953
Bsp143I GATC 5 cut(s) 430, 526, 535, 603, 627
BspACI CCGC 4 cut(s) 257, 765, 814, 839
BspANI GGCC 2 cut(s) 5, 1045
BspCNI CTCAG 2 cut(s) 538, 547
BspFNI CGCG 2 cut(s) 1215, 1356
BspHI TCATGA 1 cut(s) 651
BspLI GGNNCC 2 cut(s) 198, 437
BspMAI CTGCAG 2 cut(s) 706, 1192
BspMI ACCTGC 1 cut(s) 893
BspOI GCTAGC 2 cut(s) 623, 1145
BspPI GGATC 3 cut(s) 438, 521, 635
BspT104I TTCGAA 1 cut(s) 953
BspT107I GGYRCC 1 cut(s) 435
BspTI CTTAAG 1 cut(s) 581
BsrDI GCAATG 2 cut(s) 118, 1227
BsrFI RCCGGY 1 cut(s) 808
BsrI ACTGG 1 cut(s) 1046
BssAI RCCGGY 1 cut(s) 808
BssECI CCNNGG 5 cut(s) 167, 439, 824, 1132, 1133
BssMI GATC 5 cut(s) 430, 526, 535, 603, 627
BssNI GRCGYC 1 cut(s) 464
BssSI CACGAG 1 cut(s) 1023
Bst2BI CACGAG 1 cut(s) 1023
Bst2UI CCWGG 3 cut(s) 169, 269, 1134
Bst6I CTCTTC 3 cut(s) 237, 1242, 1275
BstACI GRCGYC 1 cut(s) 464
BstAFI CTTAAG 1 cut(s) 581
BstAPI GCANNNNNTGC 1 cut(s) 835
BstBI TTCGAA 1 cut(s) 953
BstC8I GCNNGC 5 cut(s) 483, 552, 621, 1143, 1213
BstDEI CTNAG 4 cut(s) 546, 555, 972, 1381
BstDSI CCRYGG 1 cut(s) 824
BstF5I GGATG 7 cut(s) 253, 355, 460, 823, 985, 999, 1307
BstFNI CGCG 2 cut(s) 1215, 1356
BstHHI GCGC 1 cut(s) 1358
BstKTI GATC 5 cut(s) 433, 529, 538, 606, 630
BstMBI GATC 5 cut(s) 430, 526, 535, 603, 627
BstMWI GCNNNNNNNGC 6 cut(s) 11, 329, 707, 820, 835, 1019
BstNI CCWGG 3 cut(s) 169, 269, 1134
BstNSI RCATGY 2 cut(s) 152, 778
BstSCI CCNGG 5 cut(s) 167, 267, 438, 439, 1132
BstSFI CTRYAG 3 cut(s) 9, 702, 1188
BstUI CGCG 2 cut(s) 1215, 1356
BstV1I GCAGC 4 cut(s) 688, 1132, 1150, 1202
BsuRI GGCC 2 cut(s) 5, 1045
BtgI CCRYGG 1 cut(s) 824
BtsCI GGATG 7 cut(s) 253, 355, 460, 823, 985, 999, 1307
BtsI GCAGTG 1 cut(s) 1185
BtsIMutI CAGTG 4 cut(s) 561, 1185, 1338, 1378
BveI ACCTGC 1 cut(s) 893
Cac8I GCNNGC 5 cut(s) 483, 552, 621, 1143, 1213
CaiI CAGNNNCTG 1 cut(s) 710
CciI TCATGA 1 cut(s) 651
CfoI GCGC 1 cut(s) 1358
Cfr10I RCCGGY 1 cut(s) 808
Cfr13I GGNCC 1 cut(s) 196
Cfr9I CCCGGG 1 cut(s) 439
CseI GACGC 1 cut(s) 453
Csp6I GTAC 2 cut(s) 436, 559
CspAI ACCGGT 1 cut(s) 808
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviAII CATG 9 cut(s) 149, 205, 568, 601, 652, 748, 775, 935, 1064
CviQI GTAC 2 cut(s) 436, 559
DdeI CTNAG 4 cut(s) 546, 555, 972, 1381
DpnI GATC 5 cut(s) 432, 528, 537, 605, 629
DpnII GATC 5 cut(s) 430, 526, 535, 603, 627
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 3 cut(s) 237, 1242, 1275
EarI CTCTTC 3 cut(s) 237, 1242, 1275
EciI GGCGGA 1 cut(s) 780
Eco32I GATATC 2 cut(s) 770, 1333
Eco47I GGWCC 1 cut(s) 196
Eco57I CTGAAG 4 cut(s) 125, 780, 1266, 1362
Eco88I CYCGRG 2 cut(s) 439, 663
EcoO109I RGGNCCY 1 cut(s) 196
EcoRII CCWGG 3 cut(s) 167, 267, 1132
EcoRV GATATC 2 cut(s) 770, 1333
FaeI CATG 9 cut(s) 152, 208, 571, 604, 655, 751, 778, 938, 1067
FatI CATG 9 cut(s) 148, 204, 567, 600, 651, 747, 774, 934, 1063
FauI CCCGC 1 cut(s) 807
FbaI TGATCA 1 cut(s) 535
FblI GTMKAC 1 cut(s) 805
Fnu4HI GCNGC 5 cut(s) 702, 839, 1139, 1146, 1191
FokI GGATG 7 cut(s) 260, 362, 467, 830, 986, 992, 1294
Fsp4HI GCNGC 5 cut(s) 702, 839, 1139, 1146, 1191
FspBI CTAG 3 cut(s) 620, 1142, 1388
GlaI GCGC 1 cut(s) 1357
GluI GCNGC 5 cut(s) 702, 839, 1139, 1146, 1191
HaeIII GGCC 2 cut(s) 5, 1045
HapII CCGG 3 cut(s) 410, 440, 809
HgaI GACGC 1 cut(s) 453
HhaI GCGC 1 cut(s) 1358
Hin1I GRCGYC 1 cut(s) 464
Hin1II CATG 9 cut(s) 152, 208, 571, 604, 655, 751, 778, 938, 1067
Hin6I GCGC 1 cut(s) 1356
HinP1I GCGC 1 cut(s) 1356
HindIII AAGCTT 1 cut(s) 483
HinfI GANTC 6 cut(s) 751, 884, 931, 944, 950, 1160
HpaII CCGG 3 cut(s) 410, 440, 809
HphI GGTGA 5 cut(s) 30, 40, 73, 685, 773
Hpy166II GTNNAC 2 cut(s) 561, 806
Hpy188I TCNGA 9 cut(s) 109, 144, 229, 632, 727, 760, 897, 949, 1246
Hpy188III TCNNGA 4 cut(s) 289, 530, 545, 652
Hpy8I GTNNAC 2 cut(s) 561, 806
HpyAV CCTTC 3 cut(s) 78, 149, 755
HpyCH4IV ACGT 1 cut(s) 58
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 329, 707, 820, 835, 1019
HpyF3I CTNAG 4 cut(s) 546, 555, 972, 1381
HpySE526I ACGT 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 464
Hsp92II CATG 9 cut(s) 152, 208, 571, 604, 655, 751, 778, 938, 1067
HspAI GCGC 1 cut(s) 1356
KpnI GGTACC 1 cut(s) 439
Ksp22I TGATCA 1 cut(s) 535
Kzo9I GATC 5 cut(s) 430, 526, 535, 603, 627
LmnI GCTCC 1 cut(s) 707
Lsp1109I GCAGC 4 cut(s) 688, 1132, 1150, 1202
LweI GCATC 3 cut(s) 23, 332, 970
MaeI CTAG 3 cut(s) 620, 1142, 1388
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 1 cut(s) 173
MalI GATC 5 cut(s) 432, 528, 537, 605, 629
MboI GATC 5 cut(s) 430, 526, 535, 603, 627
MboII GAAGA 7 cut(s) 172, 254, 1115, 1259, 1292, 1297, 1300
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 318, 1037, 1291, 1322, 1365
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 893, 1154
MmeI TCCRAC 3 cut(s) 553, 921, 1222
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 582, 846, 1325, 1350
MslI CAYNNNNRTG 2 cut(s) 566, 1004
Msp20I TGGCCA 1 cut(s) 5
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 3 cut(s) 410, 440, 809
MspR9I CCNGG 5 cut(s) 169, 269, 440, 441, 1134
Mva1269I GAATGC 1 cut(s) 904
MvaI CCWGG 3 cut(s) 169, 269, 1134
MvnI CGCG 2 cut(s) 1215, 1356
MwoI GCNNNNNNNGC 6 cut(s) 11, 329, 707, 820, 835, 1019
NciI CCSGG 2 cut(s) 440, 441
NdeII GATC 5 cut(s) 430, 526, 535, 603, 627
NheI GCTAGC 2 cut(s) 619, 1141
NlaIII CATG 9 cut(s) 152, 208, 571, 604, 655, 751, 778, 938, 1067
NlaIV GGNNCC 2 cut(s) 198, 437
NmeAIII GCCGAG 1 cut(s) 1142
NmuCI GTSAC 1 cut(s) 173
NspI RCATGY 2 cut(s) 152, 778
NspV TTCGAA 1 cut(s) 953
PagI TCATGA 1 cut(s) 651
PaqCI CACCTGC 1 cut(s) 893
PasI CCCWGGG 1 cut(s) 1133
PciI ACATGT 1 cut(s) 774
PctI GAATGC 1 cut(s) 904
PfeI GAWTC 4 cut(s) 751, 931, 944, 950
PinAI ACCGGT 1 cut(s) 808
PkrI GCNGC 5 cut(s) 703, 840, 1140, 1147, 1192
PleI GAGTC 2 cut(s) 892, 1154
PpsI GAGTC 2 cut(s) 892, 1154
PpuMI RGGWCCY 1 cut(s) 196
PscI ACATGT 1 cut(s) 774
Psp5II RGGWCCY 1 cut(s) 196
Psp6I CCWGG 3 cut(s) 167, 267, 1132
PspGI CCWGG 3 cut(s) 167, 267, 1132
PspN4I GGNNCC 2 cut(s) 198, 437
PspPI GGNCC 1 cut(s) 196
PspPPI RGGWCCY 1 cut(s) 196
PstI CTGCAG 2 cut(s) 706, 1192
PstNI CAGNNNCTG 1 cut(s) 710
RsaI GTAC 2 cut(s) 437, 560
RsaNI GTAC 2 cut(s) 436, 559
RseI CAYNNNNRTG 2 cut(s) 566, 1004
SaqAI TTAA 4 cut(s) 582, 846, 1325, 1350
SatI GCNGC 5 cut(s) 702, 839, 1139, 1146, 1191
Sau3AI GATC 5 cut(s) 430, 526, 535, 603, 627
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 2 cut(s) 893, 1154
ScrFI CCNGG 5 cut(s) 169, 269, 440, 441, 1134
SfaNI GCATC 3 cut(s) 23, 332, 970
SfcI CTRYAG 3 cut(s) 9, 702, 1188
SfuI TTCGAA 1 cut(s) 953
SinI GGWCC 1 cut(s) 196
SmaI CCCGGG 1 cut(s) 441
SmiMI CAYNNNNRTG 2 cut(s) 566, 1004
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 5 cut(s) 318, 1037, 1291, 1322, 1365
SsiI CCGC 4 cut(s) 257, 765, 814, 839
SspI AATATT 1 cut(s) 642
SspMI CTAG 3 cut(s) 620, 1142, 1388
StyD4I CCNGG 5 cut(s) 167, 267, 438, 439, 1132
TaiI ACGT 1 cut(s) 61
TaqI TCGA 2 cut(s) 953, 1335
TasI AATT 5 cut(s) 318, 1037, 1291, 1322, 1365
TatI WGTACW 1 cut(s) 558
TauI GCSGC 1 cut(s) 841
TfiI GAWTC 4 cut(s) 751, 931, 944, 950
Tru1I TTAA 4 cut(s) 582, 846, 1325, 1350
Tru9I TTAA 4 cut(s) 582, 846, 1325, 1350
TscAI CASTG 4 cut(s) 568, 1192, 1345, 1378
TseFI GTSAC 1 cut(s) 173
TseI GCWGC 4 cut(s) 701, 1138, 1145, 1190
Tsp45I GTSAC 1 cut(s) 173
TspDTI ATGAA 6 cut(s) 51, 640, 764, 923, 1111, 1296
TspGWI ACGGA 1 cut(s) 651
TspMI CCCGGG 1 cut(s) 439
TspRI CASTG 4 cut(s) 568, 1192, 1345, 1378
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 2 cut(s) 1037, 1365
XceI RCATGY 2 cut(s) 152, 778
XmaI CCCGGG 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 805
XspI CTAG 3 cut(s) 620, 1142, 1388
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.