Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0013329

Physical Location & Seq

Genomic Coordinates Reverse (-)

22082558 .. 22085086

Gene Structure 2529 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28640.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGGCTACAACTTCTCTGCTTCCCAAATCCCTCTCACCATTTCTCACAAACACACCATCATTCAGCTCAACTCACTTCACCAAGCTCTCATTCTTGAACCCACAAGATCACCCCCATTGCTCCAAAAGACCAAACCTACACACTACACATGCCAAGAAGAGGAACCCCTGGCTTGATCCCTTTGATGATGGAGAAGACCCTGACATGGAATACGGCTCCCTTTTTGTCGATGGGAAGCAAGACGAGGATGAAAGACTGCCCGAAAACCCCGATAACCCGTATGGGTTCTTGAAGTTCCCAATGGGGTACAGTGTGGAAGTTGCTTCACTGGCATTGAAAGTGAGGGGTGATGTGAGGAGGTGTTGCTGTGTGGTTTCTGGTGGTGTGTATGAAAATTTGCTCTTCTTTCCAGTTGTTCAGCTCCTTAAGGATCGGTACCCGGGTGTTCTGGTTGATATTGTGGCTTCTGCTAGAGGGAAGCAAGCTTATGAGCTGAATAAGAATGTGAGATGGGCTGATGTCTATGACCCTGATGAGCATTTTCCTGAACCAGCTGACTATACTGACATGGTTGGACTTCTTAAGGGTAGGTACTATGACATGGTTTTATCCACAAAGCTAGCTGGGATTGGCCATGCTACATTCTTGTACATGACAACAGCCCGGGACAGAGTCAGCTATATTTATCCAAATGTAAACGCTGCAGGAGCTGGATTGTTTCTATCTGAAACATTTACACCAAATAGTACGAATCTCTCCGATGGTGGATATAACATGTATTACCAGATGGTTGATTGGTTGGCCCGGCCATCCAAGACTGTGCCACAGCAACCTGTGCCCCCACTTAAAGTATCAATCTCAAAGAAGCTAAAGCAGGTTGTAGAGTCAAAATATAAGAATGCTGGAGTTACAAGAGGAAAATATATTGTGATTCATGGGTTAGAATCAGATTCGAAAGCCTCAATGCAGTCTAAGGGGGATACCGATAGCTTGCTACCCATCCAAGTGTGGGATGCAATAGCCAGTGGTTTAAGGGAATTCAGGCCACTTTTTGTAATCCCACATGAGAAAGAAAGGGAAAATGTGGAAGAAGTAATTGGAGATGATACCAGCATTGTGTTCATAACAACCCCTGGACAGCTTGCTGCTCTAATCAATGACTCAGCCGGTGTAATAGCTACAAACACTGCAGCTATCCAACTTGCAAATGCTCGTGATAAACCCTGCATCGCTTTATTCGGCTCCCAAGAAAAAGGAAAGCTCTTTGTCCCTAATGCAGAACAGAAGAACTGTGTTATTGTATCATCCAAGACTGGAAGACTAAAGGATATTGACATTGAAGCTGTAAAAAATGCAATTCCATTATTCAACATGTCCCTTGCTTTAGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_9

Protein Analysis

464

Amino Acids

51.3

Weight (kDa)

6.18

Isoelectric Point (pI)

28.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15980
fragaria_vesca	FvH4_6g28640 FvH4_6g28640 FvH4_6g28640
malus_domestica	MD17G1223300.v1.1
prunus_persica	Prupe.3G098200_v2.0.a1
pyrus_communis	pycom17g22730
rosa_chinensis	RchiOBHm_Chr2g0132981
rosa_laevigata	RLG00000019301
rosa_multiflora	Rmu_sc0007314.1_g000011 Rmu_sc0019447.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111580
rosa_rugosa	Rorug02G0309100
rosa_samantha	Rh2AG361300 Rh2BG367100 Rh2CG344600 Rh2DG384100
rosa_wichuraiana	Rw2G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	865
Acc65I	GGTACC	1 cut(s)	435
AccB1I	GGYRCC	1 cut(s)	435
AclWI	GGATC	2 cut(s)	170, 438
AcoI	YGGCCR	2 cut(s)	631, 806
AcsI	RAATTY	2 cut(s)	394, 1037
AfaI	GTAC	5 cut(s)	308, 437, 593, 650, 748
AfiI	CCNNNNNNNGG	3 cut(s)	159, 205, 1009
AflII	CTTAAG	2 cut(s)	425, 581
AflIII	ACRYGT	2 cut(s)	774, 1371
AgsI	TTSAA	5 cut(s)	97, 292, 337, 1340, 1369
AjnI	CCWGG	2 cut(s)	167, 1132
AjuI	GAANNNNNNNTTGG	4 cut(s)	74, 106, 1080, 1112
AlwI	GGATC	2 cut(s)	170, 438
AlwNI	CAGNNNCTG	1 cut(s)	710
Ama87I	CYCGRG	2 cut(s)	439, 663
AoxI	GGCC	4 cut(s)	631, 801, 806, 1043
ApeKI	GCWGC	3 cut(s)	701, 1145, 1190
ApoI	RAATTY	2 cut(s)	394, 1037
Asp718I	GGTACC	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	802
AsuC2I	CCSGG	5 cut(s)	440, 441, 664, 665, 805
AsuHPI	GGTGA	4 cut(s)	27, 70, 101, 359
AsuII	TTCGAA	1 cut(s)	953
AsuNHI	GCTAGC	1 cut(s)	619
AvaI	CYCGRG	2 cut(s)	439, 663
BaeGI	GKGCMC	1 cut(s)	840
BaeI	ACNNNNGTAYC	2 cut(s)	427, 460
BalI	TGGCCA	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	435
BauI	CACGAG	1 cut(s)	1212
BbsI	GAAGAC	2 cut(s)	201, 1324
BbvI	GCAGC	3 cut(s)	688, 1132, 1202
BccI	CCATC	8 cut(s)	64, 182, 224, 504, 755, 781, 817, 1007
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	169, 1134
BciVI	GTATCC	1 cut(s)	973
BcnI	CCSGG	5 cut(s)	440, 441, 664, 665, 805
BfaI	CTAG	2 cut(s)	471, 620
BfmI	CTRYAG	2 cut(s)	702, 1188
BfrI	CTTAAG	2 cut(s)	425, 581
BfuAI	ACCTGC	1 cut(s)	865
BfuI	GTATCC	1 cut(s)	973
BisI	GCNGC	3 cut(s)	702, 1146, 1191
BlsI	GCNGC	3 cut(s)	703, 1147, 1192
Bme1390I	CCNGG	7 cut(s)	169, 440, 441, 664, 665, 805, 1134
BmeT110I	CYCGRG	2 cut(s)	439, 663
BmgT120I	GGNCC	1 cut(s)	802
BmiI	GGNNCC	4 cut(s)	164, 217, 437, 1243
BmrFI	CCNGG	7 cut(s)	169, 440, 441, 664, 665, 805, 1134
BmsI	GCATC	2 cut(s)	1003, 1236
BmtI	GCTAGC	1 cut(s)	623
BpiI	GAAGAC	2 cut(s)	201, 1324
BpmI	CTGGAG	1 cut(s)	924
Bpu14I	TTCGAA	1 cut(s)	953
BpuMI	CCSGG	5 cut(s)	440, 441, 664, 665, 805
BsaJI	CCNNGG	4 cut(s)	167, 439, 663, 1132
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 205, 1009
Bse118I	RCCGGY	1 cut(s)	1166
Bse1I	ACTGG	4 cut(s)	333, 410, 1023, 1318
Bse3DI	GCAATG	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	169, 1134
BseDI	CCNNGG	4 cut(s)	167, 439, 663, 1132
BseGI	GGATG	5 cut(s)	253, 809, 999, 1018, 1304
BseLI	CCNNNNNNNGG	3 cut(s)	159, 205, 1009
BseMI	GCAATG	1 cut(s)	115
BseMII	CTCAG	1 cut(s)	1176
BseNI	ACTGG	4 cut(s)	333, 410, 1023, 1318
BseRI	GAGGAG	1 cut(s)	370
BseSI	GKGCMC	1 cut(s)	840
BseXI	GCAGC	3 cut(s)	688, 1132, 1202
BseYI	CCCAGC	1 cut(s)	623
BshFI	GGCC	4 cut(s)	633, 803, 808, 1045
BshNI	GGYRCC	1 cut(s)	435
BsiHKCI	CYCGRG	2 cut(s)	439, 663
BsiSI	CCGG	4 cut(s)	440, 664, 805, 1167
BslFI	GGGAC	3 cut(s)	680, 1253, 1360
BslI	CCNNNNNNNGG	3 cut(s)	159, 205, 1009
BsmFI	GGGAC	3 cut(s)	680, 1253, 1360
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	4 cut(s)	633, 803, 808, 1045
BsoBI	CYCGRG	2 cut(s)	439, 663
Bsp119I	TTCGAA	1 cut(s)	953
Bsp1286I	GDGCHC	1 cut(s)	840
Bsp1407I	TGTACA	1 cut(s)	648
Bsp143I	GATC	3 cut(s)	106, 175, 430
BspANI	GGCC	4 cut(s)	633, 803, 808, 1045
BspCNI	CTCAG	1 cut(s)	1175
BspLI	GGNNCC	4 cut(s)	164, 217, 437, 1243
BspMAI	CTGCAG	2 cut(s)	706, 1192
BspMI	ACCTGC	1 cut(s)	865
BspOI	GCTAGC	1 cut(s)	623
BspPI	GGATC	2 cut(s)	170, 438
BspQI	GCTCTTC	1 cut(s)	407
BspT104I	TTCGAA	1 cut(s)	953
BspT107I	GGYRCC	1 cut(s)	435
BspTI	CTTAAG	2 cut(s)	425, 581
BsrDI	GCAATG	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	1166
BsrGI	TGTACA	1 cut(s)	648
BsrI	ACTGG	4 cut(s)	333, 410, 1023, 1318
BssAI	RCCGGY	1 cut(s)	1166
BssECI	CCNNGG	4 cut(s)	167, 439, 663, 1132
BssMI	GATC	3 cut(s)	106, 175, 430
BssSI	CACGAG	1 cut(s)	1212
Bst2BI	CACGAG	1 cut(s)	1212
Bst2UI	CCWGG	2 cut(s)	169, 1134
Bst4CI	ACNGT	3 cut(s)	311, 820, 1292
Bst6I	CTCTTC	2 cut(s)	152, 407
BstAFI	CTTAAG	2 cut(s)	425, 581
BstAPI	GCANNNNNTGC	1 cut(s)	835
BstAUI	TGTACA	1 cut(s)	648
BstBI	TTCGAA	1 cut(s)	953
BstC8I	GCNNGC	4 cut(s)	483, 621, 992, 1143
BstDEI	CTNAG	2 cut(s)	972, 1162
BstF5I	GGATG	5 cut(s)	253, 809, 999, 1018, 1304
BstKTI	GATC	3 cut(s)	109, 178, 433
BstMBI	GATC	3 cut(s)	106, 175, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 707, 835
BstNI	CCWGG	2 cut(s)	169, 1134
BstNSI	RCATGY	3 cut(s)	152, 778, 1375
BstSCI	CCNGG	7 cut(s)	167, 438, 439, 662, 663, 803, 1132
BstSFI	CTRYAG	2 cut(s)	702, 1188
BstSLI	GKGCMC	1 cut(s)	840
BstV1I	GCAGC	3 cut(s)	688, 1132, 1202
BstV2I	GAAGAC	2 cut(s)	201, 1324
BsuI	GTATCC	1 cut(s)	973
BsuRI	GGCC	4 cut(s)	633, 803, 808, 1045
BtgZI	GCGATG	1 cut(s)	1213
BtsCI	GGATG	5 cut(s)	253, 809, 999, 1018, 1304
BtsI	GCAGTG	1 cut(s)	1185
BtsIMutI	CAGTG	4 cut(s)	316, 326, 1030, 1185
BveI	ACCTGC	1 cut(s)	865
Cac8I	GCNNGC	4 cut(s)	483, 621, 992, 1143
CaiI	CAGNNNCTG	1 cut(s)	710
Cfr10I	RCCGGY	1 cut(s)	1166
Cfr13I	GGNCC	1 cut(s)	802
Cfr9I	CCCGGG	2 cut(s)	439, 663
Csp6I	GTAC	5 cut(s)	307, 436, 592, 649, 747
CviQI	GTAC	5 cut(s)	307, 436, 592, 649, 747
DdeI	CTNAG	2 cut(s)	972, 1162
DpnI	GATC	3 cut(s)	108, 177, 432
DpnII	GATC	3 cut(s)	106, 175, 430
EaeI	YGGCCR	2 cut(s)	631, 806
Eam1104I	CTCTTC	2 cut(s)	152, 407
EarI	CTCTTC	2 cut(s)	152, 407
Eco88I	CYCGRG	2 cut(s)	439, 663
EcoRI	GAATTC	1 cut(s)	1037
EcoRII	CCWGG	2 cut(s)	167, 1132
FaqI	GGGAC	3 cut(s)	680, 1253, 1360
Fnu4HI	GCNGC	3 cut(s)	702, 1146, 1191
FokI	GGATG	5 cut(s)	260, 796, 986, 1025, 1291
Fsp4HI	GCNGC	3 cut(s)	702, 1146, 1191
FspBI	CTAG	2 cut(s)	471, 620
GluI	GCNGC	3 cut(s)	702, 1146, 1191
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	924
HaeIII	GGCC	4 cut(s)	633, 803, 808, 1045
HapII	CCGG	4 cut(s)	440, 664, 805, 1167
HindIII	AAGCTT	1 cut(s)	483
HinfI	GANTC	7 cut(s)	672, 751, 884, 931, 944, 950, 1160
HpaII	CCGG	4 cut(s)	440, 664, 805, 1167
HphI	GGTGA	4 cut(s)	27, 70, 101, 359
Hpy166II	GTNNAC	1 cut(s)	697
Hpy188I	TCNGA	3 cut(s)	727, 760, 949
Hpy188III	TCNNGA	4 cut(s)	94, 289, 545, 1214
Hpy8I	GTNNAC	1 cut(s)	697
HpyCH4III	ACNGT	3 cut(s)	311, 820, 1292
HpyCH4V	TGCA	8 cut(s)	704, 967, 1016, 1190, 1205, 1227, 1277, 1355
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 707, 835
HpyF3I	CTNAG	2 cut(s)	972, 1162
KpnI	GGTACC	1 cut(s)	439
Kzo9I	GATC	3 cut(s)	106, 175, 430
LguI	GCTCTTC	1 cut(s)	407
LmnI	GCTCC	5 cut(s)	125, 221, 426, 707, 1247
Lsp1109I	GCAGC	3 cut(s)	688, 1132, 1202
LweI	GCATC	2 cut(s)	1003, 1236
MaeI	CTAG	2 cut(s)	471, 620
MaeIII	GTNAC	1 cut(s)	907
MalI	GATC	3 cut(s)	108, 177, 432
MboI	GATC	3 cut(s)	106, 175, 430
MboII	GAAGA	6 cut(s)	169, 206, 394, 1100, 1297, 1329
MhlI	GDGCHC	1 cut(s)	840
MlsI	TGGCCA	1 cut(s)	633
MluCI	AATT	4 cut(s)	394, 1037, 1095, 1356
MluNI	TGGCCA	1 cut(s)	633
MlyI	GAGTC	3 cut(s)	681, 893, 1154
MmeI	TCCRAC	2 cut(s)	553, 1222
MnlI	CCTC	9 cut(s)	41, 153, 238, 336, 348, 351, 467, 908, 970
Mox20I	TGGCCA	1 cut(s)	633
MscI	TGGCCA	1 cut(s)	633
MseI	TTAA	4 cut(s)	426, 582, 846, 1031
MslI	CAYNNNNRTG	1 cut(s)	1004
Msp20I	TGGCCA	1 cut(s)	633
MspA1I	CMGCKG	1 cut(s)	554
MspCI	CTTAAG	2 cut(s)	425, 581
MspI	CCGG	4 cut(s)	440, 664, 805, 1167
MspR9I	CCNGG	7 cut(s)	169, 440, 441, 664, 665, 805, 1134
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	2 cut(s)	169, 1134
MwoI	GCNNNNNNNGC	3 cut(s)	329, 707, 835
NciI	CCSGG	5 cut(s)	440, 441, 664, 665, 805
NdeII	GATC	3 cut(s)	106, 175, 430
NheI	GCTAGC	1 cut(s)	619
NlaIV	GGNNCC	4 cut(s)	164, 217, 437, 1243
NspI	RCATGY	3 cut(s)	152, 778, 1375
NspV	TTCGAA	1 cut(s)	953
PciI	ACATGT	2 cut(s)	774, 1371
PciSI	GCTCTTC	1 cut(s)	407
PctI	GAATGC	1 cut(s)	904
PfeI	GAWTC	4 cut(s)	751, 931, 944, 950
PflFI	GACNNNGTC	1 cut(s)	671
PkrI	GCNGC	3 cut(s)	703, 1147, 1192
PleI	GAGTC	3 cut(s)	680, 892, 1154
PpsI	GAGTC	3 cut(s)	680, 892, 1154
PscI	ACATGT	2 cut(s)	774, 1371
Psp6I	CCWGG	2 cut(s)	167, 1132
PspFI	CCCAGC	1 cut(s)	623
PspGI	CCWGG	2 cut(s)	167, 1132
PspN4I	GGNNCC	4 cut(s)	164, 217, 437, 1243
PspPI	GGNCC	1 cut(s)	802
PstI	CTGCAG	2 cut(s)	706, 1192
PstNI	CAGNNNCTG	1 cut(s)	710
PsyI	GACNNNGTC	1 cut(s)	671
PvuII	CAGCTG	1 cut(s)	554
RsaI	GTAC	5 cut(s)	308, 437, 593, 650, 748
RsaNI	GTAC	5 cut(s)	307, 436, 592, 649, 747
RseI	CAYNNNNRTG	1 cut(s)	1004
SapI	GCTCTTC	1 cut(s)	407
SaqAI	TTAA	4 cut(s)	426, 582, 846, 1031
SatI	GCNGC	3 cut(s)	702, 1146, 1191
Sau3AI	GATC	3 cut(s)	106, 175, 430
Sau96I	GGNCC	1 cut(s)	802
SchI	GAGTC	3 cut(s)	681, 893, 1154
ScrFI	CCNGG	7 cut(s)	169, 440, 441, 664, 665, 805, 1134
SduI	GDGCHC	1 cut(s)	840
SfaNI	GCATC	2 cut(s)	1003, 1236
SfcI	CTRYAG	2 cut(s)	702, 1188
SfuI	TTCGAA	1 cut(s)	953
SmaI	CCCGGG	2 cut(s)	441, 665
SmiMI	CAYNNNNRTG	1 cut(s)	1004
SmlI	CTYRAG	2 cut(s)	425, 581
SmoI	CTYRAG	2 cut(s)	425, 581
Sse9I	AATT	4 cut(s)	394, 1037, 1095, 1356
SspMI	CTAG	2 cut(s)	471, 620
StyD4I	CCNGG	7 cut(s)	167, 438, 439, 662, 663, 803, 1132
TaaI	ACNGT	3 cut(s)	311, 820, 1292
TaqI	TCGA	2 cut(s)	228, 953
TasI	AATT	4 cut(s)	394, 1037, 1095, 1356
TatI	WGTACW	1 cut(s)	648
TfiI	GAWTC	4 cut(s)	751, 931, 944, 950
Tru1I	TTAA	4 cut(s)	426, 582, 846, 1031
Tru9I	TTAA	4 cut(s)	426, 582, 846, 1031
TscAI	CASTG	4 cut(s)	316, 333, 1030, 1192
TseI	GCWGC	3 cut(s)	701, 1145, 1190
TspDTI	ATGAA	4 cut(s)	264, 405, 923, 1111
TspMI	CCCGGG	2 cut(s)	439, 663
TspRI	CASTG	4 cut(s)	316, 333, 1030, 1192
Tth111I	GACNNNGTC	1 cut(s)	671
Vha464I	CTTAAG	2 cut(s)	425, 581
XapI	RAATTY	2 cut(s)	394, 1037
XceI	RCATGY	3 cut(s)	152, 778, 1375
XmaI	CCCGGG	2 cut(s)	439, 663
XspI	CTAG	2 cut(s)	471, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.