Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019447.1

Orthogroup ID

OG0013329

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2537

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019447.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1286 bp

atcacccccattgccacaaaggaccaaaccttcacactacacatgccaagaagaagaacccgtggcttgatccctttgatgatggagcagaccccgacatggaatatggctctctttttgtcgatgggaagcaagatgaggacgatagaccgcccgaaaaccccgataacccatacgggtttttgaagttcccaatggggtacagtgtggaagttgcttcactggcattgaaagtgaggggggatgttaggaggtgttgttgtgtggtttcaggtggtgtatatgaaaatttgctgttctttccagttgttcaacttcttaaggatcggtatccgggtgttcaagttgatatagtggcgtctgctagagggaagcagacttatgagttgaataaaaatgtgagatgggctgatgtctatgaccctgatgaacattttcctgaaccagctgactataccgacatggttggacttcttaagggtaggtactatgacatggttttatcaacaaagctagctgggattggccatgcttctttcttgttcatgacaacagcccgagacagagtcagctatatttatccaaacgtaaatgctgcaggagccggattgtttctatctgaaacatttacaccaaatactacgaatctctccgaaggtggatataacatgtatcaccagatggttgattggttggcccggccatccaagactgtgccacagcaacctgtgcccccacttaaagtatcaatctcaaagaagctaaagcaggttgtagagtcaaaatataagaatgcaggagtaaataaaggaaaatatattgtgattcatgggttagaatcagattcgaaagcctcaatgcagtctaagggggatactgatagcttgctatccatccaagtgtgggatgcaatagccagtggtttaagggaattcaggccactttttgttatcccacatgagaaagaaagggaaaatgtggaagaagtagttggagatgatgccagcattgtgttcataacaacccctgggcagctcgctgctcttatcaatgactcagccggtgttataactacaaatactgcagctatccaactagcaaatgctcgcgataagccctgcattgcattatttggctccgaagagaaaggaaaactctttatccctaatgcagaacagaaaaactgtgtcattgtgtcttccaagactagaagattaaaggatattgacattgaagctgtaaaaactgcaattccaatattcaatatgtccctagctttagtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009767 GO:0009773 GO:0009987 GO:0010598 GO:0015979 GO:0016020 GO:0019684 GO:0022900 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0055114 GO:0098796

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_transf_9

Protein Analysis

427

Amino Acids

47.27

Weight (kDa)

6.1

Isoelectric Point (pI)

26.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013329)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15980
fragaria_vesca	FvH4_6g28640 FvH4_6g28640 FvH4_6g28640
malus_domestica	MD17G1223300.v1.1
prunus_persica	Prupe.3G098200_v2.0.a1
pyrus_communis	pycom17g22730
rosa_chinensis	RchiOBHm_Chr2g0132981
rosa_laevigata	RLG00000019301
rosa_multiflora	Rmu_sc0007314.1_g000011 Rmu_sc0019447.1_g000001
rosa_roxburghii	Rroxscaffold_2G00111580
rosa_rugosa	Rorug02G0309100
rosa_samantha	Rh2AG361300 Rh2BG367100 Rh2CG344600 Rh2DG384100
rosa_wichuraiana	Rw2G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1069
Acc36I	ACCTGC	1 cut(s)	759
AccII	CGCG	1 cut(s)	1109
AciI	CCGC	1 cut(s)	151
AclWI	GGATC	2 cut(s)	64, 332
AcoI	YGGCCR	2 cut(s)	525, 700
AcsI	RAATTY	2 cut(s)	288, 931
AcyI	GRCGYC	1 cut(s)	358
AfaI	GTAC	2 cut(s)	202, 487
AfiI	CCNNNNNNNGG	2 cut(s)	99, 903
AflII	CTTAAG	2 cut(s)	319, 475
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	7 cut(s)	186, 231, 313, 343, 390, 1234, 1263
AjnI	CCWGG	1 cut(s)	1026
AjuI	GAANNNNNNNTTGG	2 cut(s)	974, 1006
Alw26I	GTCTC	1 cut(s)	554
AlwI	GGATC	2 cut(s)	64, 332
Ama87I	CYCGRG	1 cut(s)	557
AoxI	GGCC	4 cut(s)	525, 695, 700, 937
ApeKI	GCWGC	4 cut(s)	595, 1032, 1039, 1084
ApoI	RAATTY	2 cut(s)	288, 931
Asp700I	GAANNNNTTC	1 cut(s)	434
AspS9I	GGNCC	2 cut(s)	22, 696
AsuC2I	CCSGG	2 cut(s)	335, 699
AsuHPI	GGTGA	1 cut(s)	667
AsuII	TTCGAA	1 cut(s)	847
AsuNHI	GCTAGC	1 cut(s)	513
AvaI	CYCGRG	1 cut(s)	557
AvaII	GGWCC	1 cut(s)	22
BaeGI	GKGCMC	1 cut(s)	734
BalI	TGGCCA	1 cut(s)	527
BbsI	GAAGAC	1 cut(s)	1190
BbvI	GCAGC	4 cut(s)	582, 1026, 1044, 1096
BccI	CCATC	6 cut(s)	76, 118, 398, 675, 711, 901
BciT130I	CCWGG	1 cut(s)	1028
BciVI	GTATCC	2 cut(s)	341, 867
BcnI	CCSGG	2 cut(s)	335, 699
BcoDI	GTCTC	1 cut(s)	554
BfaI	CTAG	5 cut(s)	365, 514, 1096, 1208, 1273
BfmI	CTRYAG	2 cut(s)	596, 1082
BfrI	CTTAAG	2 cut(s)	319, 475
BfuAI	ACCTGC	1 cut(s)	759
BfuI	GTATCC	2 cut(s)	341, 867
BisI	GCNGC	4 cut(s)	596, 1033, 1040, 1085
BlsI	GCNGC	4 cut(s)	597, 1034, 1041, 1086
Bme1390I	CCNGG	3 cut(s)	335, 699, 1028
Bme18I	GGWCC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	22, 696
BmiI	GGNNCC	2 cut(s)	603, 1137
BmrFI	CCNGG	3 cut(s)	335, 699, 1028
BmsI	GCATC	2 cut(s)	897, 990
BmtI	GCTAGC	1 cut(s)	517
BpiI	GAAGAC	1 cut(s)	1190
Bpu14I	TTCGAA	1 cut(s)	847
BpuMI	CCSGG	2 cut(s)	335, 699
BsaBI	GATNNNNATC	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	61, 1026, 1027
BsaXI	ACNNNNNCTCC	2 cut(s)	243, 273
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 903
Bse118I	RCCGGY	1 cut(s)	1060
Bse1I	ACTGG	3 cut(s)	227, 304, 917
Bse3DI	GCAATG	2 cut(s)	9, 1121
Bse8I	GATNNNNATC	1 cut(s)	329
BseBI	CCWGG	1 cut(s)	1028
BseDI	CCNNGG	3 cut(s)	61, 1026, 1027
BseGI	GGATG	4 cut(s)	249, 703, 893, 912
BseJI	GATNNNNATC	1 cut(s)	329
BseLI	CCNNNNNNNGG	2 cut(s)	99, 903
BseMI	GCAATG	2 cut(s)	9, 1121
BseMII	CTCAG	1 cut(s)	1070
BseNI	ACTGG	3 cut(s)	227, 304, 917
BseSI	GKGCMC	1 cut(s)	734
BseXI	GCAGC	4 cut(s)	582, 1026, 1044, 1096
BseYI	CCCAGC	1 cut(s)	517
Bsh1236I	CGCG	1 cut(s)	1109
BshFI	GGCC	4 cut(s)	527, 697, 702, 939
BsiHKCI	CYCGRG	1 cut(s)	557
BsiSI	CCGG	4 cut(s)	334, 605, 699, 1061
BslFI	GGGAC	1 cut(s)	1254
BslI	CCNNNNNNNGG	2 cut(s)	99, 903
BsmAI	GTCTC	1 cut(s)	554
BsmFI	GGGAC	1 cut(s)	1254
BsmI	GAATGC	1 cut(s)	798
BsnI	GGCC	4 cut(s)	527, 697, 702, 939
BsoBI	CYCGRG	1 cut(s)	557
Bsp119I	TTCGAA	1 cut(s)	847
Bsp1286I	GDGCHC	1 cut(s)	734
Bsp143I	GATC	2 cut(s)	69, 324
Bsp68I	TCGCGA	1 cut(s)	1109
BspACI	CCGC	1 cut(s)	151
BspANI	GGCC	4 cut(s)	527, 697, 702, 939
BspCNI	CTCAG	1 cut(s)	1069
BspFNI	CGCG	1 cut(s)	1109
BspHI	TCATGA	1 cut(s)	545
BspLI	GGNNCC	2 cut(s)	603, 1137
BspMAI	CTGCAG	2 cut(s)	600, 1086
BspMI	ACCTGC	1 cut(s)	759
BspOI	GCTAGC	1 cut(s)	517
BspPI	GGATC	2 cut(s)	64, 332
BspT104I	TTCGAA	1 cut(s)	847
BspTI	CTTAAG	2 cut(s)	319, 475
BsrDI	GCAATG	2 cut(s)	9, 1121
BsrFI	RCCGGY	1 cut(s)	1060
BsrI	ACTGG	3 cut(s)	227, 304, 917
BssAI	RCCGGY	1 cut(s)	1060
BssECI	CCNNGG	3 cut(s)	61, 1026, 1027
BssMI	GATC	2 cut(s)	69, 324
BssNI	GRCGYC	1 cut(s)	358
Bst2UI	CCWGG	1 cut(s)	1028
Bst4CI	ACNGT	3 cut(s)	205, 714, 1186
Bst6I	CTCTTC	1 cut(s)	1136
BstACI	GRCGYC	1 cut(s)	358
BstAFI	CTTAAG	2 cut(s)	319, 475
BstAPI	GCANNNNNTGC	1 cut(s)	729
BstBI	TTCGAA	1 cut(s)	847
BstC8I	GCNNGC	5 cut(s)	515, 886, 1005, 1037, 1107
BstDEI	CTNAG	2 cut(s)	866, 1056
BstDSI	CCRYGG	1 cut(s)	61
BstF5I	GGATG	4 cut(s)	249, 703, 893, 912
BstFNI	CGCG	1 cut(s)	1109
BstKTI	GATC	2 cut(s)	72, 327
BstMAI	GTCTC	1 cut(s)	554
BstMBI	GATC	2 cut(s)	69, 324
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 601, 729
BstNI	CCWGG	1 cut(s)	1028
BstNSI	RCATGY	2 cut(s)	46, 672
BstSCI	CCNGG	3 cut(s)	333, 697, 1026
BstSFI	CTRYAG	2 cut(s)	596, 1082
BstSLI	GKGCMC	1 cut(s)	734
BstUI	CGCG	1 cut(s)	1109
BstV1I	GCAGC	4 cut(s)	582, 1026, 1044, 1096
BstV2I	GAAGAC	1 cut(s)	1190
BsuI	GTATCC	2 cut(s)	341, 867
BsuRI	GGCC	4 cut(s)	527, 697, 702, 939
BtgI	CCRYGG	1 cut(s)	61
BtsCI	GGATG	4 cut(s)	249, 703, 893, 912
BtsIMutI	CAGTG	3 cut(s)	210, 220, 924
BtuMI	TCGCGA	1 cut(s)	1109
BveI	ACCTGC	1 cut(s)	759
Cac8I	GCNNGC	5 cut(s)	515, 886, 1005, 1037, 1107
CciI	TCATGA	1 cut(s)	545
Cfr10I	RCCGGY	1 cut(s)	1060
Cfr13I	GGNCC	2 cut(s)	22, 696
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	201, 486
CviAII	CATG	9 cut(s)	43, 99, 462, 495, 529, 546, 669, 829, 958
CviQI	GTAC	2 cut(s)	201, 486
DdeI	CTNAG	2 cut(s)	866, 1056
DpnI	GATC	2 cut(s)	71, 326
DpnII	GATC	2 cut(s)	69, 324
EaeI	YGGCCR	2 cut(s)	525, 700
Eam1104I	CTCTTC	1 cut(s)	1136
EarI	CTCTTC	1 cut(s)	1136
Eco47I	GGWCC	1 cut(s)	22
Eco88I	CYCGRG	1 cut(s)	557
EcoRI	GAATTC	1 cut(s)	931
EcoRII	CCWGG	1 cut(s)	1026
FaeI	CATG	9 cut(s)	46, 102, 465, 498, 532, 549, 672, 832, 961
FaqI	GGGAC	1 cut(s)	1254
FatI	CATG	9 cut(s)	42, 98, 461, 494, 528, 545, 668, 828, 957
Fnu4HI	GCNGC	4 cut(s)	596, 1033, 1040, 1085
FokI	GGATG	4 cut(s)	256, 690, 880, 919
Fsp4HI	GCNGC	4 cut(s)	596, 1033, 1040, 1085
FspBI	CTAG	5 cut(s)	365, 514, 1096, 1208, 1273
GluI	GCNGC	4 cut(s)	596, 1033, 1040, 1085
GsaI	CCCAGC	1 cut(s)	521
HaeIII	GGCC	4 cut(s)	527, 697, 702, 939
HapII	CCGG	4 cut(s)	334, 605, 699, 1061
HgaI	GACGC	1 cut(s)	347
Hin1I	GRCGYC	1 cut(s)	358
Hin1II	CATG	9 cut(s)	46, 102, 465, 498, 532, 549, 672, 832, 961
HinfI	GANTC	7 cut(s)	566, 645, 778, 825, 838, 844, 1054
HpaII	CCGG	4 cut(s)	334, 605, 699, 1061
HphI	GGTGA	1 cut(s)	667
Hpy188I	TCNGA	4 cut(s)	621, 654, 843, 1140
Hpy188III	TCNNGA	3 cut(s)	439, 546, 1108
HpyAV	CCTTC	2 cut(s)	40, 649
HpyCH4III	ACNGT	3 cut(s)	205, 714, 1186
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	9 cut(s)	598, 796, 861, 910, 1084, 1121, 1126, 1171, 1249
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 601, 729
HpyF3I	CTNAG	2 cut(s)	866, 1056
HpySE526I	ACGT	1 cut(s)	587
Hsp92I	GRCGYC	1 cut(s)	358
Hsp92II	CATG	9 cut(s)	46, 102, 465, 498, 532, 549, 672, 832, 961
Kzo9I	GATC	2 cut(s)	69, 324
LmnI	GCTCC	3 cut(s)	85, 601, 1141
Lsp1109I	GCAGC	4 cut(s)	582, 1026, 1044, 1096
LweI	GCATC	2 cut(s)	897, 990
MaeI	CTAG	5 cut(s)	365, 514, 1096, 1208, 1273
MaeII	ACGT	1 cut(s)	587
MalI	GATC	2 cut(s)	71, 326
MboI	GATC	2 cut(s)	69, 324
MboII	GAAGA	6 cut(s)	63, 66, 994, 1153, 1190, 1223
MhlI	GDGCHC	1 cut(s)	734
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	3 cut(s)	288, 931, 1250
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	3 cut(s)	575, 787, 1048
MmeI	TCCRAC	3 cut(s)	447, 972, 1116
MnlI	CCTC	5 cut(s)	132, 230, 245, 361, 864
Mox20I	TGGCCA	1 cut(s)	527
MroXI	GAANNNNTTC	1 cut(s)	434
MscI	TGGCCA	1 cut(s)	527
MseI	TTAA	5 cut(s)	320, 476, 740, 925, 1216
MslI	CAYNNNNRTG	1 cut(s)	898
Msp20I	TGGCCA	1 cut(s)	527
MspA1I	CMGCKG	1 cut(s)	448
MspCI	CTTAAG	2 cut(s)	319, 475
MspI	CCGG	4 cut(s)	334, 605, 699, 1061
MspR9I	CCNGG	3 cut(s)	335, 699, 1028
Mva1269I	GAATGC	1 cut(s)	798
MvaI	CCWGG	1 cut(s)	1028
MvnI	CGCG	1 cut(s)	1109
MwoI	GCNNNNNNNGC	3 cut(s)	223, 601, 729
NciI	CCSGG	2 cut(s)	335, 699
NdeII	GATC	2 cut(s)	69, 324
NheI	GCTAGC	1 cut(s)	513
NlaIII	CATG	9 cut(s)	46, 102, 465, 498, 532, 549, 672, 832, 961
NlaIV	GGNNCC	2 cut(s)	603, 1137
NruI	TCGCGA	1 cut(s)	1109
NspI	RCATGY	2 cut(s)	46, 672
NspV	TTCGAA	1 cut(s)	847
PagI	TCATGA	1 cut(s)	545
PasI	CCCWGGG	1 cut(s)	1027
PciI	ACATGT	1 cut(s)	668
PctI	GAATGC	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	434
PfeI	GAWTC	4 cut(s)	645, 825, 838, 844
PflFI	GACNNNGTC	1 cut(s)	565
PkrI	GCNGC	4 cut(s)	597, 1034, 1041, 1086
PleI	GAGTC	3 cut(s)	574, 786, 1048
PpsI	GAGTC	3 cut(s)	574, 786, 1048
PscI	ACATGT	1 cut(s)	668
PsiI	TTATAA	1 cut(s)	1069
Psp6I	CCWGG	1 cut(s)	1026
PspFI	CCCAGC	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	1026
PspN4I	GGNNCC	2 cut(s)	603, 1137
PspPI	GGNCC	2 cut(s)	22, 696
PstI	CTGCAG	2 cut(s)	600, 1086
PsyI	GACNNNGTC	1 cut(s)	565
PvuII	CAGCTG	1 cut(s)	448
RruI	TCGCGA	1 cut(s)	1109
RsaI	GTAC	2 cut(s)	202, 487
RsaNI	GTAC	2 cut(s)	201, 486
RseI	CAYNNNNRTG	1 cut(s)	898
SaqAI	TTAA	5 cut(s)	320, 476, 740, 925, 1216
SatI	GCNGC	4 cut(s)	596, 1033, 1040, 1085
Sau3AI	GATC	2 cut(s)	69, 324
Sau96I	GGNCC	2 cut(s)	22, 696
SchI	GAGTC	3 cut(s)	575, 787, 1048
ScrFI	CCNGG	3 cut(s)	335, 699, 1028
SduI	GDGCHC	1 cut(s)	734
SfaNI	GCATC	2 cut(s)	897, 990
SfcI	CTRYAG	2 cut(s)	596, 1082
SfuI	TTCGAA	1 cut(s)	847
SinI	GGWCC	1 cut(s)	22
SmiMI	CAYNNNNRTG	1 cut(s)	898
SmlI	CTYRAG	2 cut(s)	319, 475
SmoI	CTYRAG	2 cut(s)	319, 475
Sse9I	AATT	3 cut(s)	288, 931, 1250
SsiI	CCGC	1 cut(s)	151
SspI	AATATT	1 cut(s)	1259
SspMI	CTAG	5 cut(s)	365, 514, 1096, 1208, 1273
StyD4I	CCNGG	3 cut(s)	333, 697, 1026
TaaI	ACNGT	3 cut(s)	205, 714, 1186
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	2 cut(s)	122, 847
TasI	AATT	3 cut(s)	288, 931, 1250
TfiI	GAWTC	4 cut(s)	645, 825, 838, 844
Tru1I	TTAA	5 cut(s)	320, 476, 740, 925, 1216
Tru9I	TTAA	5 cut(s)	320, 476, 740, 925, 1216
TscAI	CASTG	3 cut(s)	210, 227, 924
TseI	GCWGC	4 cut(s)	595, 1032, 1039, 1084
TspDTI	ATGAA	5 cut(s)	299, 443, 534, 817, 1005
TspRI	CASTG	3 cut(s)	210, 227, 924
Tth111I	GACNNNGTC	1 cut(s)	565
Vha464I	CTTAAG	2 cut(s)	319, 475
VpaK11BI	GGWCC	1 cut(s)	22
XapI	RAATTY	2 cut(s)	288, 931
XceI	RCATGY	2 cut(s)	46, 672
XmnI	GAANNNNTTC	1 cut(s)	434
XspI	CTAG	5 cut(s)	365, 514, 1096, 1208, 1273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.