Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007942

Physical Location & Seq

Genomic Coordinates Forward (+)

5504608 .. 5507059

Gene Structure 2452 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G16040.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGAAAGAGGCGAAGGAGAAGAAGAATCCAGAAATCTCCGTTAGTATCACGATATCAACTTGGGGGGCTTTTGCTGTTTATGTGATTACTGGGTTATTTCTGATCTTCGGATTTCACGTGGTCCGTAACAAATACTCTGTCGATCTCATTTCTGATCCAACTCTCACTCTGCGTCTCCTATGGATTATTGAGTTCCCGATCGTGGTAATCATCTACAGCTTGTTCCGACGAAACCCAGAGAAATGCTCGTACTTTAGAGCTGTTGGCCGAAGCTTAGTCGGACTAATTGCCGGTGCTCTTATAAATGCTTTGGGAGCTGTTTCTTTGGGTGCACCTATTGGAATGCAATCTCTATCAAAAACAATTCACTGGTCCTTTCTAATGTCTGTTTTCACGGTTGTACCAGCAACTGCAGTTTTAGGTGCATCATGGATAGATTGGCATCGTATCTTTGCTTCACTAAAACCAATCGGAATTATAGAACATATGCTCTTAGTTCCAGCATATGGAGCAATTATTGGAGGATGGTTTGGAGCTTGGCCTATGCCACTTGACTGGGAAAGACCATGGCAGGAATGGCCTATATGTGTGTGTTATGGAGCTATAGGAGGCTACATTGGTGGACAAATGGTGAGTTTGTTGACTCTTCTCAGCGAACACAAGAATTTGAAGCTAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000234 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006665 GO:0006666 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016740 GO:0016741 GO:0019538 GO:0019637 GO:0031984 GO:0032259 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042180 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0046519 GO:0055114 GO:0071704 GO:0090407 GO:0097164 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko03040 map00563 map01100 map03040

Pfam Domains

Protein Families

PIG-F

Protein Analysis

226

Amino Acids

25.06

Weight (kDa)

9.17

Isoelectric Point (pI)

30.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-F	PF06699	40 - 211	9.4e-44	GPI biosynthesis protein family Pig-F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16040 AT1G16040 AT1G16040 AT1G16040
fragaria_vesca	FvH4_6g28300 FvH4_6g28300 FvH4_6g28300
malus_domestica	MD12G1013200.v1.1 MD14G1138800.v1.1
prunus_persica	Prupe.3G103300_v2.0.a1
pyrus_communis	pycom12g01050
rosa_chinensis	RchiOBHm_Chr2g0132361
rosa_laevigata	RLG00000019249
rosa_multiflora	Rmu_sc0000781.1_g000005 Rmu_sc0002795.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112120
rosa_rugosa	Rorug02G0303900 Rorug02G0304000 Rorug02G0304100
rosa_samantha	Rh2AG357000 Rh2BG363500 Rh2CG340500 Rh2DG380200
rosa_wichuraiana	Rw2G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	302
AccB7I	CCANNNNNTGG	1 cut(s)	506
AclWI	GGATC	1 cut(s)	149
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	664
AcvI	CACGTG	1 cut(s)	118
AfaI	GTAC	2 cut(s)	251, 402
AfiI	CCNNNNNNNGG	2 cut(s)	202, 506
AgsI	TTSAA	1 cut(s)	670
AluBI	AGCT	7 cut(s)	219, 260, 273, 317, 536, 602, 673
AluI	AGCT	7 cut(s)	219, 260, 273, 317, 536, 602, 673
Alw21I	GWGCWC	2 cut(s)	298, 334
Alw26I	GTCTC	1 cut(s)	179
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	1 cut(s)	149
AlwNI	CAGNNNCTG	1 cut(s)	410
AoxI	GGCC	3 cut(s)	265, 539, 578
ApaLI	GTGCAC	1 cut(s)	330
ApoI	RAATTY	1 cut(s)	664
ArsI	GACNNNNNNTTYG	2 cut(s)	123, 155
AspS9I	GGNCC	2 cut(s)	121, 372
AsuHPI	GGTGA	1 cut(s)	643
AsuNHI	GCTAGC	1 cut(s)	673
AvaII	GGWCC	2 cut(s)	121, 372
BaeGI	GKGCMC	1 cut(s)	334
BaeI	ACNNNNGTAYC	2 cut(s)	384, 417
BarI	GAAGNNNNNNTAC	2 cut(s)	439, 471
BbrPI	CACGTG	1 cut(s)	118
Bbv12I	GWGCWC	2 cut(s)	298, 334
BccI	CCATC	1 cut(s)	519
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	2 cut(s)	674, 679
BfmI	CTRYAG	3 cut(s)	214, 411, 603
Bme18I	GGWCC	2 cut(s)	121, 372
BmgT120I	GGNCC	2 cut(s)	121, 372
BmrI	ACTGGG	2 cut(s)	99, 565
BmsI	GCATC	2 cut(s)	434, 451
BmtI	GCTAGC	1 cut(s)	677
BmuI	ACTGGG	2 cut(s)	99, 565
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
BsaAI	YACGTR	1 cut(s)	118
BsaBI	GATNNNNATC	1 cut(s)	441
BsaJI	CCNNGG	1 cut(s)	566
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 506
Bse118I	RCCGGY	1 cut(s)	290
Bse1I	ACTGG	3 cut(s)	94, 374, 560
Bse8I	GATNNNNATC	1 cut(s)	441
BseDI	CCNNGG	1 cut(s)	566
BseGI	GGATG	1 cut(s)	530
BseJI	GATNNNNATC	1 cut(s)	441
BseLI	CCNNNNNNNGG	2 cut(s)	202, 506
BseMII	CTCAG	1 cut(s)	664
BseNI	ACTGG	3 cut(s)	94, 374, 560
BseSI	GKGCMC	1 cut(s)	334
Bsh1285I	CGRYCG	1 cut(s)	201
BshFI	GGCC	3 cut(s)	267, 541, 580
BsiEI	CGRYCG	1 cut(s)	201
BsiHKAI	GWGCWC	2 cut(s)	298, 334
BsiSI	CCGG	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	202, 506
BsmAI	GTCTC	1 cut(s)	179
BsmBI	CGTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	348
BsnI	GGCC	3 cut(s)	267, 541, 580
Bsp1286I	GDGCHC	2 cut(s)	298, 334
Bsp143I	GATC	4 cut(s)	102, 142, 154, 198
Bsp19I	CCATGG	1 cut(s)	566
BspANI	GGCC	3 cut(s)	267, 541, 580
BspCNI	CTCAG	1 cut(s)	663
BspMAI	CTGCAG	1 cut(s)	415
BspOI	GCTAGC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	290
BsrI	ACTGG	3 cut(s)	94, 374, 560
BssAI	RCCGGY	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	566
BssMI	GATC	4 cut(s)	102, 142, 154, 198
BssT1I	CCWWGG	1 cut(s)	566
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	651
BstBAI	YACGTR	1 cut(s)	118
BstC8I	GCNNGC	1 cut(s)	675
BstDEI	CTNAG	3 cut(s)	274, 493, 650
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	1 cut(s)	530
BstKTI	GATC	4 cut(s)	105, 145, 157, 201
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	4 cut(s)	102, 142, 154, 198
BstMCI	CGRYCG	1 cut(s)	201
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 509, 577
BstSFI	CTRYAG	3 cut(s)	214, 411, 603
BstSLI	GKGCMC	1 cut(s)	334
BstXI	CCANNNNNNTGG	1 cut(s)	555
BsuRI	GGCC	3 cut(s)	267, 541, 580
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	530
BtsIMutI	CAGTG	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	675
CaiI	CAGNNNCTG	1 cut(s)	410
Cfr10I	RCCGGY	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	121, 372
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	2 cut(s)	250, 401
CviAII	CATG	2 cut(s)	429, 567
CviQI	GTAC	2 cut(s)	250, 401
DdeI	CTNAG	3 cut(s)	274, 493, 650
DpnI	GATC	4 cut(s)	104, 144, 156, 200
DpnII	GATC	4 cut(s)	102, 142, 154, 198
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Eco130I	CCWWGG	1 cut(s)	566
Eco32I	GATATC	1 cut(s)	54
Eco47I	GGWCC	2 cut(s)	121, 372
Eco72I	CACGTG	1 cut(s)	118
EcoRV	GATATC	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	566
ErhI	CCWWGG	1 cut(s)	566
Esp3I	CGTCTC	1 cut(s)	179
FaeI	CATG	2 cut(s)	432, 570
FatI	CATG	2 cut(s)	428, 566
FauNDI	CATATG	2 cut(s)	486, 505
FokI	GGATG	1 cut(s)	537
FspBI	CTAG	2 cut(s)	674, 679
HaeIII	GGCC	3 cut(s)	267, 541, 580
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	432, 570
HincII	GTYRAC	1 cut(s)	642
HindII	GTYRAC	1 cut(s)	642
HindIII	AAGCTT	1 cut(s)	271
HinfI	GANTC	2 cut(s)	25, 643
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	643
Hpy166II	GTNNAC	3 cut(s)	332, 623, 642
Hpy188I	TCNGA	6 cut(s)	102, 110, 154, 227, 281, 473
Hpy188III	TCNNGA	3 cut(s)	29, 49, 196
Hpy8I	GTNNAC	3 cut(s)	332, 623, 642
Hpy99I	CGWCG	1 cut(s)	231
HpyAV	CCTTC	1 cut(s)	7
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	117
HpyCH4V	TGCA	4 cut(s)	332, 346, 413, 425
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 509, 577
HpyF3I	CTNAG	3 cut(s)	274, 493, 650
HpySE526I	ACGT	1 cut(s)	117
Hsp92II	CATG	2 cut(s)	432, 570
Kzo9I	GATC	4 cut(s)	102, 142, 154, 198
LmnI	GCTCC	4 cut(s)	314, 509, 533, 599
LpnPI	CCDG	9 cut(s)	42, 75, 249, 304, 355, 417, 513, 541, 557
LweI	GCATC	2 cut(s)	434, 451
MaeI	CTAG	2 cut(s)	674, 679
MaeII	ACGT	1 cut(s)	117
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	4 cut(s)	104, 144, 156, 200
MboI	GATC	4 cut(s)	102, 142, 154, 198
MboII	GAAGA	4 cut(s)	31, 34, 97, 638
MhlI	GDGCHC	2 cut(s)	298, 334
MluCI	AATT	5 cut(s)	285, 363, 474, 513, 664
MlyI	GAGTC	1 cut(s)	637
MmeI	TCCRAC	3 cut(s)	182, 250, 259
MnlI	CCTC	2 cut(s)	515, 602
MspI	CCGG	1 cut(s)	291
Mva1269I	GAATGC	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	314, 509, 577
NcoI	CCATGG	1 cut(s)	566
NdeI	CATATG	2 cut(s)	486, 505
NdeII	GATC	4 cut(s)	102, 142, 154, 198
NheI	GCTAGC	1 cut(s)	673
NlaIII	CATG	2 cut(s)	432, 570
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	25
PflMI	CCANNNNNTGG	1 cut(s)	506
Ple19I	CGATCG	1 cut(s)	201
PleI	GAGTC	1 cut(s)	637
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	637
Ppu21I	YACGTR	1 cut(s)	118
PsiI	TTATAA	1 cut(s)	302
PspCI	CACGTG	1 cut(s)	118
PspPI	GGNCC	2 cut(s)	121, 372
PstI	CTGCAG	1 cut(s)	415
PstNI	CAGNNNCTG	1 cut(s)	410
PvuI	CGATCG	1 cut(s)	201
RsaI	GTAC	2 cut(s)	251, 402
RsaNI	GTAC	2 cut(s)	250, 401
Sau3AI	GATC	4 cut(s)	102, 142, 154, 198
Sau96I	GGNCC	2 cut(s)	121, 372
SchI	GAGTC	1 cut(s)	637
SduI	GDGCHC	2 cut(s)	298, 334
SfaNI	GCATC	2 cut(s)	434, 451
SfcI	CTRYAG	3 cut(s)	214, 411, 603
SinI	GGWCC	2 cut(s)	121, 372
Sse9I	AATT	5 cut(s)	285, 363, 474, 513, 664
SspMI	CTAG	2 cut(s)	674, 679
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	120
TaqI	TCGA	1 cut(s)	141
TasI	AATT	5 cut(s)	285, 363, 474, 513, 664
TfiI	GAWTC	1 cut(s)	25
TscAI	CASTG	1 cut(s)	374
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	28, 113
TspRI	CASTG	1 cut(s)	374
Van91I	CCANNNNNTGG	1 cut(s)	506
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	2 cut(s)	121, 372
XapI	RAATTY	1 cut(s)	664
XcmI	CCANNNNNNNNNTGG	1 cut(s)	573
XspI	CTAG	2 cut(s)	674, 679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.