Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007942

Physical Location & Seq

Genomic Coordinates Reverse (-)

929372 .. 932497

Gene Structure 3126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g01050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAGCAGAAGAAGAACAAAGAGATGGCCTCTAAACCCTCCTCGAAAGCAATATCCAAGGCCGAGGCACTGGTGGTCCACTTGATTTCTGGCTTCGGATTGGCAGTAGCTTTCTGGGTGGCCCACAATGTCCACTCCATCACCCTCACCTCCCATCCCTCTCATACTCTCTGTTTGATCTGGGTTTTCGAATGCCCAGCTGTGATTCTTCTTTACAGCCGGTATAGGAAGGACCATGAACGGTGCTCTTACTTCAAAGCTGTAGGGCGTGGCCTGCTAGGACTTCCTGCTGGGGCTCTGATAAATGCTATAGGAGCAATAGTGCTGGGCGCGCCTGCTGGCATCCAGTATCTACCAAAGACCATTAACTGGTCTCTCGTTATGTCATTGTTCACTATTGTGCCTGCAGCTTCTGTTTTTGGTTCATCATGGACAGATTGGCAACGTATATTTGCATTTACAAAGCCTATTGAACCTGTGGATTATATGATTTGTCTACCAGCACATGGAGCTGTTATTGGTGCTTGGTTTGGGGCTTTTCCAATGCCGCTTGACTGGGAACGTCCATGGCAGGAATGGCCTATTTGTGTGAGTTATGGAGCCATTGTTGGGTACCTGGTTGGCATCGTTGCATCATTGGGCTTTATACTTGTGCGGCAGCATGTCAAAGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000234 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006665 GO:0006666 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016740 GO:0016741 GO:0019538 GO:0019637 GO:0031984 GO:0032259 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042180 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0046519 GO:0055114 GO:0071704 GO:0090407 GO:0097164 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko03040 map00563 map01100 map03040

Pfam Domains

Protein Families

PIG-F

Protein Analysis

226

Amino Acids

24.72

Weight (kDa)

9.24

Isoelectric Point (pI)

29.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-F	PF06699	46 - 212	8.1e-47	GPI biosynthesis protein family Pig-F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16040 AT1G16040 AT1G16040 AT1G16040
fragaria_vesca	FvH4_6g28300 FvH4_6g28300 FvH4_6g28300
malus_domestica	MD12G1013200.v1.1 MD14G1138800.v1.1
prunus_persica	Prupe.3G103300_v2.0.a1
pyrus_communis	pycom12g01050
rosa_chinensis	RchiOBHm_Chr2g0132361
rosa_laevigata	RLG00000019249
rosa_multiflora	Rmu_sc0000781.1_g000005 Rmu_sc0002795.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112120
rosa_rugosa	Rorug02G0303900 Rorug02G0304000 Rorug02G0304100
rosa_samantha	Rh2AG357000 Rh2BG363500 Rh2CG340500 Rh2DG380200
rosa_wichuraiana	Rw2G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	612
AccB7I	CCANNNNNTGG	2 cut(s)	369, 506
AccI	GTMKAC	1 cut(s)	496
AccII	CGCG	1 cut(s)	332
AciI	CCGC	2 cut(s)	548, 655
AfaI	GTAC	1 cut(s)	614
AfiI	CCNNNNNNNGG	3 cut(s)	369, 506, 609
AgsI	TTSAA	2 cut(s)	256, 473
AjnI	CCWGG	1 cut(s)	615
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	5 cut(s)	110, 200, 260, 410, 512
AluI	AGCT	5 cut(s)	110, 200, 260, 410, 512
Alw21I	GWGCWC	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	378, 666
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	5 cut(s)	27, 60, 120, 271, 578
ApeKI	GCWGC	2 cut(s)	407, 658
AscI	GGCGCGCC	1 cut(s)	330
Asp718I	GGTACC	1 cut(s)	612
AspLEI	GCGC	2 cut(s)	332, 334
AspS9I	GGNCC	3 cut(s)	76, 121, 232
AsuHPI	GGTGA	2 cut(s)	133, 139
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	2 cut(s)	76, 232
BanI	GGYRCC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	419, 670
BccI	CCATC	3 cut(s)	19, 146, 162
BciT130I	CCWGG	1 cut(s)	617
BcoDI	GTCTC	2 cut(s)	378, 666
BfaI	CTAG	1 cut(s)	278
BfmI	CTRYAG	3 cut(s)	261, 309, 405
BisI	GCNGC	4 cut(s)	408, 548, 656, 659
BlsI	GCNGC	4 cut(s)	409, 549, 657, 660
Bme1390I	CCNGG	1 cut(s)	617
Bme18I	GGWCC	2 cut(s)	76, 232
BmgT120I	GGNCC	3 cut(s)	76, 121, 232
BmiI	GGNNCC	2 cut(s)	601, 614
BmrFI	CCNGG	1 cut(s)	617
BmrI	ACTGGG	1 cut(s)	565
BmsI	GCATC	3 cut(s)	351, 633, 641
BmuI	ACTGGG	1 cut(s)	565
BplI	GAGNNNNNCTC	2 cut(s)	14, 46
Bpu14I	TTCGAA	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	57, 63, 566
BsaXI	ACNNNNNCTCC	4 cut(s)	306, 336, 591, 621
Bsc4I	CCNNNNNNNGG	3 cut(s)	369, 506, 609
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	4 cut(s)	75, 346, 374, 560
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	3 cut(s)	57, 63, 566
BseGI	GGATG	2 cut(s)	154, 342
BseLI	CCNNNNNNNGG	3 cut(s)	369, 506, 609
BseNI	ACTGG	4 cut(s)	75, 346, 374, 560
BsePI	GCGCGC	1 cut(s)	330
BseRI	GAGGAG	1 cut(s)	31
BseXI	GCAGC	2 cut(s)	419, 670
BseYI	CCCAGC	3 cut(s)	196, 290, 325
Bsh1236I	CGCG	1 cut(s)	332
BshFI	GGCC	5 cut(s)	29, 62, 122, 273, 580
BshNI	GGYRCC	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	248
BsiSI	CCGG	1 cut(s)	220
BslI	CCNNNNNNNGG	3 cut(s)	369, 506, 609
BsmAI	GTCTC	2 cut(s)	378, 666
BsmI	GAATGC	1 cut(s)	197
BsnI	GGCC	5 cut(s)	29, 62, 122, 273, 580
Bso31I	GGTCTC	1 cut(s)	378
Bsp119I	TTCGAA	1 cut(s)	189
Bsp1286I	GDGCHC	2 cut(s)	248, 298
Bsp143I	GATC	1 cut(s)	177
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	2 cut(s)	548, 655
BspANI	GGCC	5 cut(s)	29, 62, 122, 273, 580
BspFNI	CGCG	1 cut(s)	332
BspLI	GGNNCC	2 cut(s)	601, 614
BspMAI	CTGCAG	1 cut(s)	409
BspT104I	TTCGAA	1 cut(s)	189
BspT107I	GGYRCC	1 cut(s)	612
BspTNI	GGTCTC	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	219
BsrI	ACTGG	4 cut(s)	75, 346, 374, 560
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	3 cut(s)	57, 63, 566
BssHII	GCGCGC	1 cut(s)	330
BssMI	GATC	1 cut(s)	177
BssT1I	CCWWGG	2 cut(s)	57, 566
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	5 cut(s)	275, 332, 336, 340, 405
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	2 cut(s)	154, 342
BstFNI	CGCG	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	332, 334
BstKTI	GATC	1 cut(s)	180
BstMAI	GTCTC	2 cut(s)	378, 666
BstMBI	GATC	1 cut(s)	177
BstMWI	GCNNNNNNNGC	5 cut(s)	274, 314, 331, 509, 577
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	1 cut(s)	665
BstSCI	CCNGG	1 cut(s)	615
BstSFI	CTRYAG	3 cut(s)	261, 309, 405
BstUI	CGCG	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	419, 670
BsuRI	GGCC	5 cut(s)	29, 62, 122, 273, 580
BtgI	CCRYGG	1 cut(s)	566
BtsCI	GGATG	2 cut(s)	154, 342
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	5 cut(s)	275, 332, 336, 340, 405
CaiI	CAGNNNCTG	1 cut(s)	413
CfoI	GCGC	2 cut(s)	332, 334
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	76, 121, 232
CsiI	ACCWGGT	1 cut(s)	615
Csp6I	GTAC	1 cut(s)	613
CviAII	CATG	5 cut(s)	236, 429, 506, 567, 662
CviQI	GTAC	1 cut(s)	613
DpnI	GATC	1 cut(s)	179
DpnII	GATC	1 cut(s)	177
Eco130I	CCWWGG	2 cut(s)	57, 566
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	2 cut(s)	76, 232
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	2 cut(s)	57, 566
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	57, 566
FaeI	CATG	5 cut(s)	239, 432, 509, 570, 665
FatI	CATG	5 cut(s)	235, 428, 505, 566, 661
FblI	GTMKAC	1 cut(s)	496
Fnu4HI	GCNGC	4 cut(s)	408, 548, 656, 659
FokI	GGATG	2 cut(s)	141, 329
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	4 cut(s)	408, 548, 656, 659
FspBI	CTAG	1 cut(s)	278
GlaI	GCGC	2 cut(s)	331, 333
GluI	GCNGC	4 cut(s)	408, 548, 656, 659
GsaI	CCCAGC	3 cut(s)	200, 294, 329
HaeIII	GGCC	5 cut(s)	29, 62, 122, 273, 580
HapII	CCGG	1 cut(s)	220
HhaI	GCGC	2 cut(s)	332, 334
Hin1II	CATG	5 cut(s)	239, 432, 509, 570, 665
Hin6I	GCGC	2 cut(s)	330, 332
HinP1I	GCGC	2 cut(s)	330, 332
HinfI	GANTC	1 cut(s)	205
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	2 cut(s)	133, 139
Hpy166II	GTNNAC	4 cut(s)	79, 133, 393, 497
Hpy188I	TCNGA	2 cut(s)	98, 300
Hpy8I	GTNNAC	4 cut(s)	79, 133, 393, 497
HpyAV	CCTTC	1 cut(s)	223
HpyCH4III	ACNGT	1 cut(s)	243
HpyCH4IV	ACGT	2 cut(s)	445, 562
HpyCH4V	TGCA	3 cut(s)	407, 455, 632
HpyF10VI	GCNNNNNNNGC	5 cut(s)	274, 314, 331, 509, 577
HpySE526I	ACGT	2 cut(s)	445, 562
Hsp92II	CATG	5 cut(s)	239, 432, 509, 570, 665
HspAI	GCGC	2 cut(s)	330, 332
KpnI	GGTACC	1 cut(s)	616
Kzo9I	GATC	1 cut(s)	177
LmnI	GCTCC	3 cut(s)	314, 509, 599
Lsp1109I	GCAGC	2 cut(s)	419, 670
LweI	GCATC	3 cut(s)	351, 633, 641
MabI	ACCWGGT	1 cut(s)	615
MaeI	CTAG	1 cut(s)	278
MaeII	ACGT	2 cut(s)	445, 562
MalI	GATC	1 cut(s)	179
MboI	GATC	1 cut(s)	177
MboII	GAAGA	3 cut(s)	22, 25, 200
MhlI	GDGCHC	2 cut(s)	248, 298
MnlI	CCTC	7 cut(s)	40, 49, 52, 58, 155, 160, 169
MseI	TTAA	1 cut(s)	366
MslI	CAYNNNNRTG	1 cut(s)	398
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	617
Mva1269I	GAATGC	1 cut(s)	197
MvaI	CCWGG	1 cut(s)	617
MvnI	CGCG	1 cut(s)	332
MwoI	GCNNNNNNNGC	5 cut(s)	274, 314, 331, 509, 577
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	1 cut(s)	177
NlaIII	CATG	5 cut(s)	239, 432, 509, 570, 665
NlaIV	GGNNCC	2 cut(s)	601, 614
NmeAIII	GCCGAG	1 cut(s)	88
NspI	RCATGY	1 cut(s)	665
NspV	TTCGAA	1 cut(s)	189
OliI	CACNNNNGTG	1 cut(s)	398
PalAI	GGCGCGCC	1 cut(s)	330
PauI	GCGCGC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	197
PfeI	GAWTC	1 cut(s)	205
PflMI	CCANNNNNTGG	2 cut(s)	369, 506
PkrI	GCNGC	4 cut(s)	409, 549, 657, 660
Psp6I	CCWGG	1 cut(s)	615
PspFI	CCCAGC	3 cut(s)	196, 290, 325
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	2 cut(s)	601, 614
PspPI	GGNCC	3 cut(s)	76, 121, 232
PstI	CTGCAG	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	413
PteI	GCGCGC	1 cut(s)	330
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	1 cut(s)	614
RsaNI	GTAC	1 cut(s)	613
RseI	CAYNNNNRTG	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	4 cut(s)	408, 548, 656, 659
Sau3AI	GATC	1 cut(s)	177
Sau96I	GGNCC	3 cut(s)	76, 121, 232
ScrFI	CCNGG	1 cut(s)	617
SduI	GDGCHC	2 cut(s)	248, 298
SexAI	ACCWGGT	1 cut(s)	615
SfaNI	GCATC	3 cut(s)	351, 633, 641
SfcI	CTRYAG	3 cut(s)	261, 309, 405
SfuI	TTCGAA	1 cut(s)	189
SgsI	GGCGCGCC	1 cut(s)	330
SinI	GGWCC	2 cut(s)	76, 232
SmiMI	CAYNNNNRTG	1 cut(s)	398
SsiI	CCGC	2 cut(s)	548, 655
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	2 cut(s)	57, 566
TaaI	ACNGT	1 cut(s)	243
TaiI	ACGT	2 cut(s)	448, 565
TaqI	TCGA	2 cut(s)	44, 189
TauI	GCSGC	2 cut(s)	550, 658
TfiI	GAWTC	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	2 cut(s)	407, 658
TspDTI	ATGAA	3 cut(s)	17, 252, 414
TspRI	CASTG	1 cut(s)	75
Van91I	CCANNNNNTGG	2 cut(s)	369, 506
VpaK11BI	GGWCC	2 cut(s)	76, 232
XceI	RCATGY	1 cut(s)	665
XcmI	CCANNNNNNNNNTGG	2 cut(s)	86, 573
XmiI	GTMKAC	1 cut(s)	496
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.