Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007942

Physical Location & Seq

Genomic Coordinates Forward (+)

34097803 .. 34102817

Gene Structure 5015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0304100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2559 bp

ATGGATATAAGTAATGAAGCCAGTGTTGATCCATTTCCTATTGGACCTTCAACCTTTGTTGGTCGGACCATTGCTTTCCGGGTTTTGTTCTGCAAGTCAATGTCGCATTTGAGACATCAAATCTTTCATATGTTGTTTAGCCTCGTCTTTAGATTCAGGGACTTTTTGGCTCCTATGTTCTCATGGTTGCATCCTCGAAACCCGCAAGGGATATTGGCAATGGTGACAATCATCGCCTTTCTGTTGAAACGATACACAAATGTTAAAGTGAAGGCTGAAATGGCTTATCGGAGGAAATTTTGGAGAAATATGATGAGGACTGCATTGACATATGAGGAGTGGGCTCATGCTGCTAAAATGCTTGATAAGGAGACCCCAAAGATGAATGAATCAGACCTTTATGATGAAGAAGTGGTTAAGAACAAGCTTCAAGAACTCCACCACCGTCGTGAAGAGGGTTCTCTCCGAGATATAATATTCTGTATGCGAGCAGATCTTGTTAGAAATCTGGGTAACATGTGCAACCCTGAGCTTCACAAGGGGAGACTTCATGTGCCCAAACTTATAAAGGAATATATTGATGAGGTCTCAACTCAGTTGAGAATGGTTTGCGATTCAGACTCAGAAGAGCTCTCATTGGAAGAGAAGCTTGCTTTCATGCATGAAACAAGACACGCTTTTGGGAGAACTGCCTTGCTCTTGAGTGGGGGTGCTTCTCTTGGATCGTTTCATGTCGGTGTAGTTAAAACGCTGGTGGAACATAAGCTTATGCCGAGAATAATTGCTGGTTCTAGTGTGGGGTCCATTATGTGTTCTGTTGTTGCCACTAGGTCTTGGCCAGAGCTGCAAAGTTTTTTTGAGGATTCTTGGCACTCGTTGCAGTTTTTTGATCAGATGGGTGGGATTTTTACAGTTGTGAAGAGGGTCATGACTCGTGGAGCTGTCCATGAGATCAGGCAGTTGCAAATGATGTTAAGGCATTTAACCAGTAATCTAACATTTCAAGAAGCTTATGACATGACAGGTCGAATTCTTGGGATAACTGTTTGCTCCCCAAGGAAGCATGAGCCACCTAGATGCCTTAACTACTTGACTTCACCTCATGTTGTTATATGGAGTGCAGTGACAGCTTCTTGTGCTTTCCCAGGCCTTTTTGAGGCCCAGGAGCTAATGGCGAAAGATAGAAGTGGTGAGATTGTTCCTTATCATCCTCCATTTAATTTGGGTCCAGAGGCAGGGACAATGCCAGTGCGCAGGTGGCGGGATGGTAGCTTGGAGATTGATTTACCTATGATGCAGCTAAAAGAATTGTTCAACGTTAATCATTTTATAGTCAGTCAGGCAAATCCTCATATTGCACCATTATTAAGACTAAAGGAATTTGTGAGAGCTTGTGGAGGCAACTTTGCTGCCAAGCTTGCTCATCTTGTTGAGATGGAGGTTAAACATAGATGTAACCAGATCCTGGAACTTGGTTTTCCATTAGGTGGACTTGCAAAGCTGTTTGCTCAAGATTGGGAGGGTGATGTTACTGTTGTGATGCCTGCCACACTAGCTCAGTATTCAAAAATTATACAAAACCCAACATATGTTGAGCTTCAAAAGGCAGCTAACCAAGGTAGACGGTGCACTTGGGAGAAACTATCAGCCATAAAAGCAAACTGTGGCATTGAGCTTGCTCTTGATGAGTCTGTTGTTATTCTCAATCACATGCGTAGACTGAAAAGGAGTGCTGAAAGAGCTGCTGCTTCTTCTCATGGCCTACCTAGCACGGTCAGGTTCAGTGCATCAAGAAGAATTCCATCTTGGAATTGCATTGCTCGTGAGAATTCTAGTGGTTCCCTTGAAGAAGACCTCCTTGGAGATACTGGTTCCTCATTCCATCATGGAGTTGGTCCATCCACCAGTGGTAAAATCTTCCATACCCACCGTAACATACATGATGGTCATGGAAGTGACAGCGAATCTGAGAGTGCCGATTTAAATTCTTGGACAAGATCCGGTGGACCCTTGATGAGGACGACATCAGCAACTAAATTCATCGACTTTGTCCAAAACTTGGACGTTGATGCTGAACTGAACAGAGGTTTGTTGGTTAATCCTAACTCAGTTGCGACGCTTCAGTTGGGGGGCAGTAATCAATACTATCACAGCCCAAGGGGGACCACACCAGACCGTAGCCCTGACAGCACAAAATTTGATAAGAGGGATTTCTCGAGTGTGGCTTCAGTAAACGGTTCTAGCATTATGGTGACAGCAGGTGATCTTTTGCAGCCGGAAAGGATACATAACGGGATTGTGTTCAACGTTGTGAAGAAAGAAGACTTGTCATTGTCAAGTAGTAGGAGTCAGGATATGGAAAATTATAACAGTGAAGTTGCTGAGTGTGTGCAACTTGACTCTCTTGAAAAGGAGATGGATACTAGATCTGCATCTGAATATGGCGATGCTGATACTGCTTCAGAAATCGGGTTAAATGATACAGCACCTTGCCAGTCCACAGATCAATCTAACATTGCTGATGATTCTAATAATCAGAGCTCTGCAGAGTGCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000234 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006665 GO:0006666 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016740 GO:0016741 GO:0019538 GO:0019637 GO:0031984 GO:0032259 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042180 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0046519 GO:0055114 GO:0071704 GO:0090407 GO:0097164 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko03040 map00563 map01100 map03040

Pfam Domains

Protein Families

PIG-F

Protein Analysis

852

Amino Acids

95.54

Weight (kDa)

6.57

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3336	PF11815	94 - 225	3.1e-32	Domain of unknown function (DUF3336)
Patatin	PF01734	232 - 404	9.6e-19	Patatin-like phospholipase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16040 AT1G16040 AT1G16040 AT1G16040
fragaria_vesca	FvH4_6g28300 FvH4_6g28300 FvH4_6g28300
malus_domestica	MD12G1013200.v1.1 MD14G1138800.v1.1
prunus_persica	Prupe.3G103300_v2.0.a1
pyrus_communis	pycom12g01050
rosa_chinensis	RchiOBHm_Chr2g0132361
rosa_laevigata	RLG00000019249
rosa_multiflora	Rmu_sc0000781.1_g000005 Rmu_sc0002795.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112120
rosa_rugosa	Rorug02G0303900 Rorug02G0304000 Rorug02G0304100
rosa_samantha	Rh2AG357000 Rh2BG363500 Rh2CG340500 Rh2DG380200
rosa_wichuraiana	Rw2G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	566, 2367
AarI	CACCTGC	2 cut(s)	1245, 2249
Acc16I	TGCGCA	1 cut(s)	1253
Acc36I	ACCTGC	2 cut(s)	1245, 2249
AccB7I	CCANNNNNTGG	3 cut(s)	1465, 1487, 2059
AccI	GTMKAC	2 cut(s)	1621, 1717
AciI	CCGC	2 cut(s)	203, 1261
AclI	AACGTT	2 cut(s)	1317, 2307
AclWI	GGATC	4 cut(s)	23, 730, 1456, 1992
AcoI	YGGCCR	1 cut(s)	836
AcsI	RAATTY	8 cut(s)	296, 1029, 1379, 1797, 1828, 1984, 2036, 2195
AcuI	CTGAAG	3 cut(s)	2105, 2211, 2445
AfiI	CCNNNNNNNGG	6 cut(s)	1156, 1235, 1465, 1487, 2016, 2059
AflIII	ACRYGT	1 cut(s)	516
AjnI	CCWGG	3 cut(s)	1144, 1161, 1464
AjuI	GAANNNNNNNTTGG	4 cut(s)	1789, 1821, 1842, 1874
AleI	CACNNNNGTG	1 cut(s)	447
Alw21I	GWGCWC	3 cut(s)	633, 1631, 2543
Alw26I	GTCTC	4 cut(s)	106, 365, 538, 592
Alw44I	GTGCAC	1 cut(s)	1627
AlwI	GGATC	4 cut(s)	23, 730, 1456, 1992
AlwNI	CAGNNNCTG	1 cut(s)	1465
Ama87I	CYCGRG	1 cut(s)	2215
AoxI	GGCC	4 cut(s)	836, 1147, 1158, 1759
ApaLI	GTGCAC	1 cut(s)	1627
ApeKI	GCWGC	8 cut(s)	350, 844, 1297, 1409, 1607, 1742, 1745, 2272
ApoI	RAATTY	8 cut(s)	296, 1029, 1379, 1797, 1828, 1984, 2036, 2195
AspLEI	GCGC	1 cut(s)	1254
AspS9I	GGNCC	8 cut(s)	44, 66, 801, 1159, 1226, 1895, 2006, 2163
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	6 cut(s)	235, 1089, 1202, 1535, 2263, 2273
AvaI	CYCGRG	1 cut(s)	2215
AvaII	GGWCC	7 cut(s)	44, 66, 801, 1226, 1895, 2006, 2163
BaeGI	GKGCMC	2 cut(s)	558, 1631
BalI	TGGCCA	1 cut(s)	838
BanII	GRGCYC	3 cut(s)	346, 633, 2543
BauI	CACGAG	2 cut(s)	933, 1821
BbsI	GAAGAC	2 cut(s)	1857, 2328
Bbv12I	GWGCWC	3 cut(s)	633, 1631, 2543
BbvI	GCAGC	8 cut(s)	337, 831, 1309, 1396, 1619, 1729, 1732, 2284
BccI	CCATC	8 cut(s)	889, 1259, 1429, 1810, 1890, 1906, 1937, 2410
BciT130I	CCWGG	3 cut(s)	1146, 1163, 1466
BciVI	GTATCC	2 cut(s)	2277, 2413
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	1 cut(s)	80
BcoDI	GTCTC	4 cut(s)	106, 365, 538, 592
BfaI	CTAG	8 cut(s)	792, 828, 1074, 1553, 1767, 1833, 2241, 2424
BfmI	CTRYAG	1 cut(s)	2544
BfuAI	ACCTGC	2 cut(s)	1245, 2249
BfuI	GTATCC	2 cut(s)	2277, 2413
BglII	AGATCT	2 cut(s)	493, 2426
BisI	GCNGC	8 cut(s)	351, 845, 1298, 1410, 1608, 1743, 1746, 2273
BlsI	GCNGC	8 cut(s)	352, 846, 1299, 1411, 1609, 1744, 1747, 2274
Bme1390I	CCNGG	4 cut(s)	80, 1146, 1163, 1466
Bme18I	GGWCC	7 cut(s)	44, 66, 801, 1226, 1895, 2006, 2163
BmeT110I	CYCGRG	1 cut(s)	2215
BmgT120I	GGNCC	8 cut(s)	44, 66, 801, 1159, 1226, 1895, 2006, 2163
BmiI	GGNNCC	7 cut(s)	171, 802, 1227, 1840, 1873, 2008, 2164
BmrFI	CCNGG	4 cut(s)	80, 1146, 1163, 1466
BmsI	GCATC	8 cut(s)	199, 1067, 1284, 1530, 1796, 2059, 2437, 2441
BpiI	GAAGAC	2 cut(s)	1857, 2328
Bpu10I	CCTNAGC	1 cut(s)	528
BpuEI	CTTGAG	2 cut(s)	721, 1494
BpuMI	CCSGG	1 cut(s)	80
BsaBI	GATNNNNATC	1 cut(s)	2431
BsaI	GGTCTC	2 cut(s)	365, 592
BsaJI	CCNNGG	6 cut(s)	1055, 1144, 1161, 1615, 1858, 2156
BsaWI	WCCGGW	1 cut(s)	2000
Bsc4I	CCNNNNNNNGG	6 cut(s)	1156, 1235, 1465, 1487, 2016, 2059
Bse1I	ACTGG	6 cut(s)	21, 987, 1247, 1873, 1905, 2494
Bse3DI	GCAATG	4 cut(s)	69, 225, 1815, 2514
Bse8I	GATNNNNATC	1 cut(s)	2431
BseBI	CCWGG	3 cut(s)	1146, 1163, 1466
BseDI	CCNNGG	6 cut(s)	1055, 1144, 1161, 1615, 1858, 2156
BseGI	GGATG	4 cut(s)	190, 1207, 1270, 1898
BseJI	GATNNNNATC	1 cut(s)	2431
BseLI	CCNNNNNNNGG	6 cut(s)	1156, 1235, 1465, 1487, 2016, 2059
BseMI	GCAATG	4 cut(s)	69, 225, 1815, 2514
BseMII	CTCAG	7 cut(s)	519, 608, 636, 1571, 1959, 2121, 2373
BseNI	ACTGG	6 cut(s)	21, 987, 1247, 1873, 1905, 2494
BseRI	GAGGAG	1 cut(s)	350
BseSI	GKGCMC	2 cut(s)	558, 1631
BseXI	GCAGC	8 cut(s)	337, 831, 1309, 1396, 1619, 1729, 1732, 2284
BsgI	GTGCAG	1 cut(s)	1140
BshFI	GGCC	4 cut(s)	838, 1149, 1160, 1761
BsiHKAI	GWGCWC	3 cut(s)	633, 1631, 2543
BsiHKCI	CYCGRG	1 cut(s)	2215
BsiSI	CCGG	3 cut(s)	79, 2001, 2276
BslFI	GGGAC	3 cut(s)	173, 1252, 2176
BslI	CCNNNNNNNGG	6 cut(s)	1156, 1235, 1465, 1487, 2016, 2059
BsmAI	GTCTC	4 cut(s)	106, 365, 538, 592
BsmFI	GGGAC	3 cut(s)	173, 1252, 2176
BsnI	GGCC	4 cut(s)	838, 1149, 1160, 1761
Bso31I	GGTCTC	2 cut(s)	365, 592
BsoBI	CYCGRG	1 cut(s)	2215
Bsp1286I	GDGCHC	5 cut(s)	346, 558, 633, 1631, 2543
BspACI	CCGC	2 cut(s)	203, 1261
BspANI	GGCC	4 cut(s)	838, 1149, 1160, 1761
BspCNI	CTCAG	7 cut(s)	520, 607, 635, 1570, 1960, 2120, 2374
BspHI	TCATGA	1 cut(s)	927
BspLI	GGNNCC	7 cut(s)	171, 802, 1227, 1840, 1873, 2008, 2164
BspMAI	CTGCAG	1 cut(s)	2548
BspMI	ACCTGC	2 cut(s)	1245, 2249
BspPI	GGATC	4 cut(s)	23, 730, 1456, 1992
BspQI	GCTCTTC	1 cut(s)	621
BspTNI	GGTCTC	2 cut(s)	365, 592
BsrDI	GCAATG	4 cut(s)	69, 225, 1815, 2514
BsrI	ACTGG	6 cut(s)	21, 987, 1247, 1873, 1905, 2494
BssECI	CCNNGG	6 cut(s)	1055, 1144, 1161, 1615, 1858, 2156
BssSI	CACGAG	2 cut(s)	933, 1821
BssT1I	CCWWGG	4 cut(s)	1055, 1615, 1858, 2156
Bst2BI	CACGAG	2 cut(s)	933, 1821
Bst2UI	CCWGG	3 cut(s)	1146, 1163, 1466
Bst6I	CTCTTC	4 cut(s)	447, 621, 636, 914
BstAPI	GCANNNNNTGC	1 cut(s)	877
BstC8I	GCNNGC	5 cut(s)	489, 651, 1419, 1545, 1677
BstDEI	CTNAG	7 cut(s)	528, 594, 622, 1557, 1968, 2107, 2382
BstENI	CCTNNNNNAGG	2 cut(s)	1154, 2014
BstF5I	GGATG	4 cut(s)	190, 1207, 1270, 1898
BstHHI	GCGC	1 cut(s)	1254
BstMAI	GTCTC	4 cut(s)	106, 365, 538, 592
BstNI	CCWGG	3 cut(s)	1146, 1163, 1466
BstNSI	RCATGY	2 cut(s)	520, 1714
BstSCI	CCNGG	4 cut(s)	78, 1144, 1161, 1464
BstSFI	CTRYAG	1 cut(s)	2544
BstSLI	GKGCMC	2 cut(s)	558, 1631
BstV1I	GCAGC	8 cut(s)	337, 831, 1309, 1396, 1619, 1729, 1732, 2284
BstV2I	GAAGAC	2 cut(s)	1857, 2328
BstX2I	RGATCY	4 cut(s)	493, 1461, 1997, 2426
BstYI	RGATCY	4 cut(s)	493, 1461, 1997, 2426
BsuI	GTATCC	2 cut(s)	2277, 2413
BsuRI	GGCC	4 cut(s)	838, 1149, 1160, 1761
BtgZI	GCGATG	2 cut(s)	217, 2460
BtsCI	GGATG	4 cut(s)	190, 1207, 1270, 1898
BtsI	GCAGTG	1 cut(s)	1128
BtsIMutI	CAGTG	6 cut(s)	28, 1128, 1254, 1789, 1912, 2377
BveI	ACCTGC	2 cut(s)	1245, 2249
Cac8I	GCNNGC	5 cut(s)	489, 651, 1419, 1545, 1677
CaiI	CAGNNNCTG	1 cut(s)	1465
CciI	TCATGA	1 cut(s)	927
CfoI	GCGC	1 cut(s)	1254
Cfr13I	GGNCC	8 cut(s)	44, 66, 801, 1159, 1226, 1895, 2006, 2163
CseI	GACGC	1 cut(s)	2125
DdeI	CTNAG	7 cut(s)	528, 594, 622, 1557, 1968, 2107, 2382
DraI	TTTAAA	1 cut(s)	1983
EaeI	YGGCCR	1 cut(s)	836
Eam1104I	CTCTTC	4 cut(s)	447, 621, 636, 914
EarI	CTCTTC	4 cut(s)	447, 621, 636, 914
Ecl136II	GAGCTC	2 cut(s)	631, 2541
Eco130I	CCWWGG	4 cut(s)	1055, 1615, 1858, 2156
Eco147I	AGGCCT	1 cut(s)	1149
Eco24I	GRGCYC	3 cut(s)	346, 633, 2543
Eco31I	GGTCTC	2 cut(s)	365, 592
Eco47I	GGWCC	7 cut(s)	44, 66, 801, 1226, 1895, 2006, 2163
Eco53kI	GAGCTC	2 cut(s)	631, 2541
Eco57I	CTGAAG	3 cut(s)	2105, 2211, 2445
Eco88I	CYCGRG	1 cut(s)	2215
EcoICRI	GAGCTC	2 cut(s)	631, 2541
EcoNI	CCTNNNNNAGG	2 cut(s)	1154, 2014
EcoRI	GAATTC	3 cut(s)	1029, 1797, 1828
EcoRII	CCWGG	3 cut(s)	1144, 1161, 1464
EcoT14I	CCWWGG	4 cut(s)	1055, 1615, 1858, 2156
EcoT22I	ATGCAT	1 cut(s)	663
EcoT38I	GRGCYC	3 cut(s)	346, 633, 2543
ErhI	CCWWGG	4 cut(s)	1055, 1615, 1858, 2156
FalI	AAGNNNNNCTT	6 cut(s)	633, 665, 661, 693, 1842, 1874
FaqI	GGGAC	3 cut(s)	173, 1252, 2176
FauI	CCCGC	2 cut(s)	210, 1254
FauNDI	CATATG	3 cut(s)	129, 331, 1588
FbaI	TGATCA	1 cut(s)	889
FblI	GTMKAC	2 cut(s)	1621, 1717
Fnu4HI	GCNGC	8 cut(s)	351, 845, 1298, 1410, 1608, 1743, 1746, 2273
FokI	GGATG	4 cut(s)	177, 1194, 1277, 1885
FriOI	GRGCYC	3 cut(s)	346, 633, 2543
Fsp4HI	GCNGC	8 cut(s)	351, 845, 1298, 1410, 1608, 1743, 1746, 2273
FspBI	CTAG	8 cut(s)	792, 828, 1074, 1553, 1767, 1833, 2241, 2424
FspI	TGCGCA	1 cut(s)	1253
GlaI	GCGC	1 cut(s)	1253
GluI	GCNGC	8 cut(s)	351, 845, 1298, 1410, 1608, 1743, 1746, 2273
HaeIII	GGCC	4 cut(s)	838, 1149, 1160, 1761
HapII	CCGG	3 cut(s)	79, 2001, 2276
HgaI	GACGC	1 cut(s)	2125
HhaI	GCGC	1 cut(s)	1254
Hin6I	GCGC	1 cut(s)	1252
HinP1I	GCGC	1 cut(s)	1252
HindIII	AAGCTT	5 cut(s)	425, 647, 764, 1008, 1415
HpaII	CCGG	3 cut(s)	79, 2001, 2276
HphI	GGTGA	6 cut(s)	235, 1089, 1202, 1535, 2263, 2273
Hpy166II	GTNNAC	7 cut(s)	1490, 1622, 1629, 1718, 2006, 2233, 2499
Hpy8I	GTNNAC	7 cut(s)	1490, 1622, 1629, 1718, 2006, 2233, 2499
Hpy99I	CGWCG	2 cut(s)	450, 2119
HpyAV	CCTTC	2 cut(s)	57, 265
HpyCH4IV	ACGT	3 cut(s)	1317, 2064, 2307
HpyF3I	CTNAG	7 cut(s)	528, 594, 622, 1557, 1968, 2107, 2382
HpySE526I	ACGT	3 cut(s)	1317, 2064, 2307
HspAI	GCGC	1 cut(s)	1252
Ksp22I	TGATCA	1 cut(s)	889
LguI	GCTCTTC	1 cut(s)	621
LmnI	GCTCC	4 cut(s)	175, 938, 1055, 1165
Lsp1109I	GCAGC	8 cut(s)	337, 831, 1309, 1396, 1619, 1729, 1732, 2284
LweI	GCATC	8 cut(s)	199, 1067, 1284, 1530, 1796, 2059, 2437, 2441
MaeI	CTAG	8 cut(s)	792, 828, 1074, 1553, 1767, 1833, 2241, 2424
MaeII	ACGT	3 cut(s)	1317, 2064, 2307
MaeIII	GTNAC	8 cut(s)	223, 512, 1123, 1454, 1528, 1931, 1955, 2251
MflI	RGATCY	4 cut(s)	493, 1461, 1997, 2426
MhlI	GDGCHC	5 cut(s)	346, 558, 633, 1631, 2543
MlsI	TGGCCA	1 cut(s)	838
MluNI	TGGCCA	1 cut(s)	838
MlyI	GAGTC	5 cut(s)	614, 925, 1697, 2356, 2393
MmeI	TCCRAC	1 cut(s)	44
Mox20I	TGGCCA	1 cut(s)	838
Mph1103I	ATGCAT	1 cut(s)	663
MscI	TGGCCA	1 cut(s)	838
MslI	CAYNNNNRTG	5 cut(s)	447, 735, 1075, 1953, 2249
Msp20I	TGGCCA	1 cut(s)	838
MspI	CCGG	3 cut(s)	79, 2001, 2276
MspR9I	CCNGG	4 cut(s)	80, 1146, 1163, 1466
MvaI	CCWGG	3 cut(s)	1146, 1163, 1466
NciI	CCSGG	1 cut(s)	80
NdeI	CATATG	3 cut(s)	129, 331, 1588
NlaIV	GGNNCC	7 cut(s)	171, 802, 1227, 1840, 1873, 2008, 2164
NmeAIII	GCCGAG	1 cut(s)	798
NmuCI	GTSAC	4 cut(s)	223, 1123, 1955, 2251
NsbI	TGCGCA	1 cut(s)	1253
NsiI	ATGCAT	1 cut(s)	663
NspI	RCATGY	2 cut(s)	520, 1714
OliI	CACNNNNGTG	1 cut(s)	447
PaeR7I	CTCGAG	1 cut(s)	2215
PagI	TCATGA	1 cut(s)	927
PaqCI	CACCTGC	2 cut(s)	1245, 2249
PceI	AGGCCT	1 cut(s)	1149
PciI	ACATGT	1 cut(s)	516
PciSI	GCTCTTC	1 cut(s)	621
PfeI	GAWTC	6 cut(s)	153, 389, 614, 863, 1964, 2525
PflFI	GACNNNGTC	1 cut(s)	2048
PflMI	CCANNNNNTGG	3 cut(s)	1465, 1487, 2059
PfoI	TCCNGGA	1 cut(s)	1464
PkrI	GCNGC	8 cut(s)	352, 846, 1299, 1411, 1609, 1744, 1747, 2274
PleI	GAGTC	5 cut(s)	614, 925, 1696, 2355, 2393
PpsI	GAGTC	5 cut(s)	614, 925, 1696, 2355, 2393
PscI	ACATGT	1 cut(s)	516
PsiI	TTATAA	2 cut(s)	566, 2367
Psp124BI	GAGCTC	2 cut(s)	633, 2543
Psp1406I	AACGTT	2 cut(s)	1317, 2307
Psp6I	CCWGG	3 cut(s)	1144, 1161, 1464
PspGI	CCWGG	3 cut(s)	1144, 1161, 1464
PspN4I	GGNNCC	7 cut(s)	171, 802, 1227, 1840, 1873, 2008, 2164
PspPI	GGNCC	8 cut(s)	44, 66, 801, 1159, 1226, 1895, 2006, 2163
PstI	CTGCAG	1 cut(s)	2548
PstNI	CAGNNNCTG	1 cut(s)	1465
PsuI	RGATCY	4 cut(s)	493, 1461, 1997, 2426
PsyI	GACNNNGTC	1 cut(s)	2048
RseI	CAYNNNNRTG	5 cut(s)	447, 735, 1075, 1953, 2249
SacI	GAGCTC	2 cut(s)	633, 2543
SapI	GCTCTTC	1 cut(s)	621
SatI	GCNGC	8 cut(s)	351, 845, 1298, 1410, 1608, 1743, 1746, 2273
Sau96I	GGNCC	8 cut(s)	44, 66, 801, 1159, 1226, 1895, 2006, 2163
SchI	GAGTC	5 cut(s)	614, 925, 1697, 2356, 2393
ScrFI	CCNGG	4 cut(s)	80, 1146, 1163, 1466
SduI	GDGCHC	5 cut(s)	346, 558, 633, 1631, 2543
SfaNI	GCATC	8 cut(s)	199, 1067, 1284, 1530, 1796, 2059, 2437, 2441
SfcI	CTRYAG	1 cut(s)	2544
Sfr274I	CTCGAG	1 cut(s)	2215
SinI	GGWCC	7 cut(s)	44, 66, 801, 1226, 1895, 2006, 2163
SlaI	CTCGAG	1 cut(s)	2215
SmiI	ATTTAAAT	1 cut(s)	1983
SmiMI	CAYNNNNRTG	5 cut(s)	447, 735, 1075, 1953, 2249
SmlI	CTYRAG	3 cut(s)	700, 1509, 2215
SmoI	CTYRAG	3 cut(s)	700, 1509, 2215
SseBI	AGGCCT	1 cut(s)	1149
SsiI	CCGC	2 cut(s)	203, 1261
SspI	AATATT	1 cut(s)	477
SspMI	CTAG	8 cut(s)	792, 828, 1074, 1553, 1767, 1833, 2241, 2424
SstI	GAGCTC	2 cut(s)	633, 2543
StuI	AGGCCT	1 cut(s)	1149
StyD4I	CCNGG	4 cut(s)	78, 1144, 1161, 1464
StyI	CCWWGG	4 cut(s)	1055, 1615, 1858, 2156
SwaI	ATTTAAAT	1 cut(s)	1983
TaiI	ACGT	3 cut(s)	1320, 2067, 2310
TaqI	TCGA	4 cut(s)	196, 1027, 2043, 2216
TfiI	GAWTC	6 cut(s)	153, 389, 614, 863, 1964, 2525
TscAI	CASTG	6 cut(s)	28, 1128, 1254, 1789, 1912, 2377
TseFI	GTSAC	4 cut(s)	223, 1123, 1955, 2251
TseI	GCWGC	8 cut(s)	350, 844, 1297, 1409, 1607, 1742, 1745, 2272
Tsp45I	GTSAC	4 cut(s)	223, 1123, 1955, 2251
TspRI	CASTG	6 cut(s)	28, 1128, 1254, 1789, 1912, 2377
Tth111I	GACNNNGTC	1 cut(s)	2048
Van91I	CCANNNNNTGG	3 cut(s)	1465, 1487, 2059
VneI	GTGCAC	1 cut(s)	1627
VpaK11BI	GGWCC	7 cut(s)	44, 66, 801, 1226, 1895, 2006, 2163
XagI	CCTNNNNNAGG	2 cut(s)	1154, 2014
XapI	RAATTY	8 cut(s)	296, 1029, 1379, 1797, 1828, 1984, 2036, 2195
XceI	RCATGY	2 cut(s)	520, 1714
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1254, 1889
XhoI	CTCGAG	1 cut(s)	2215
XmiI	GTMKAC	2 cut(s)	1621, 1717
XspI	CTAG	8 cut(s)	792, 828, 1074, 1553, 1767, 1833, 2241, 2424
Zsp2I	ATGCAT	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.