Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007942

Physical Location & Seq

Genomic Coordinates Forward (+)

8108269 .. 8112617

Gene Structure 4349 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G103300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAGCCGAAGAAGAACAAAGAGATGGCCGTTAAAGCTTCCTCAAGATCAATATCTGCAACAGAGGCACTGGTTGTCCACCTGATTTGTGGCTTAGGATTAGCTGTAGCTTTTTGGGTGGCCCACAATCTCCACTCCATCAACCTCACCACCCATCCTTCTCATACCCTTCGTCTGATCTGCGTTATTGAGTGCCCAATTGTGATTCTTCTTTACAGCCGGTATAGGAAGGACCGTGAACGATGCTCCTATTTGAAAGCTGTAGGACGTGGCCTACTGGGACTTCCTGCTGGGGCTCTGGTAAATGCATTGGGAGCAATTGCCTTGGGTGCACCCGCTGGAATCCAGTATCTACCAAAGACCATTAACTGGTCTCTAGTGATGTCATTGTTCACCATTGTGCCTGCAGCTTCTGTTTTTGGTTCATCATGGATGGATTGGCAACGCATATTTGCATGTACAAAAGCTATGGACCCTGTAGATTATATGATTTGTATACCAGCACATGGAGTTATTATTGGTGCTTGGTTTGGAGCTTTTCCAATGCCGCTTGACTGGGAACGCCCATGGCAGGAATGGCCCATTTGTGTGAGTTATGGAGCCATTGCTGGGTACCTGGTTGCAATGGTGGCATCATTTGGCTTTATACTTGTGAGGCAGCATGTCAAAGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000234 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006665 GO:0006666 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016740 GO:0016741 GO:0019538 GO:0019637 GO:0031984 GO:0032259 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042180 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0046519 GO:0055114 GO:0071704 GO:0090407 GO:0097164 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko03040 map00563 map01100 map03040

Pfam Domains

Protein Families

PIG-F

Protein Analysis

226

Amino Acids

24.68

Weight (kDa)

9.24

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16040 AT1G16040 AT1G16040 AT1G16040
fragaria_vesca	FvH4_6g28300 FvH4_6g28300 FvH4_6g28300
malus_domestica	MD12G1013200.v1.1 MD14G1138800.v1.1
prunus_persica	Prupe.3G103300_v2.0.a1
pyrus_communis	pycom12g01050
rosa_chinensis	RchiOBHm_Chr2g0132361
rosa_laevigata	RLG00000019249
rosa_multiflora	Rmu_sc0000781.1_g000005 Rmu_sc0002795.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112120
rosa_rugosa	Rorug02G0303900 Rorug02G0304000 Rorug02G0304100
rosa_samantha	Rh2AG357000 Rh2BG363500 Rh2CG340500 Rh2DG380200
rosa_wichuraiana	Rw2G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	612
AccB1I	GGYRCC	1 cut(s)	612
AccB7I	CCANNNNNTGG	2 cut(s)	369, 506
AccI	GTMKAC	1 cut(s)	496
AciI	CCGC	2 cut(s)	336, 548
AcoI	YGGCCR	1 cut(s)	27
AfaI	GTAC	2 cut(s)	460, 614
AfiI	CCNNNNNNNGG	4 cut(s)	369, 506, 571, 609
AgsI	TTSAA	1 cut(s)	256
AjiI	CACGTC	1 cut(s)	269
AjnI	CCWGG	1 cut(s)	615
AleI	CACNNNNGTG	1 cut(s)	398
AluBI	AGCT	7 cut(s)	38, 104, 110, 260, 410, 467, 536
AluI	AGCT	7 cut(s)	38, 104, 110, 260, 410, 467, 536
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	2 cut(s)	378, 666
Alw44I	GTGCAC	1 cut(s)	330
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	4 cut(s)	27, 120, 271, 578
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	407, 658
Asp718I	GGTACC	1 cut(s)	612
AspS9I	GGNCC	4 cut(s)	121, 232, 472, 579
AsuHPI	GGTGA	2 cut(s)	139, 385
AvaII	GGWCC	2 cut(s)	232, 472
BaeGI	GKGCMC	2 cut(s)	197, 334
BanI	GGYRCC	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	298
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	419, 670
BccI	CCATC	4 cut(s)	19, 146, 162, 427
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	617
BcoDI	GTCTC	2 cut(s)	378, 666
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	4 cut(s)	105, 261, 405, 477
BisI	GCNGC	3 cut(s)	408, 548, 659
BlsI	GCNGC	3 cut(s)	409, 549, 660
Bme1390I	CCNGG	1 cut(s)	617
Bme18I	GGWCC	2 cut(s)	232, 472
BmgBI	CACGTC	1 cut(s)	269
BmgT120I	GGNCC	4 cut(s)	121, 232, 472, 579
BmiI	GGNNCC	3 cut(s)	474, 601, 614
BmrFI	CCNGG	1 cut(s)	617
BmrI	ACTGGG	2 cut(s)	287, 565
BmsI	GCATC	2 cut(s)	233, 641
BmuI	ACTGGG	2 cut(s)	287, 565
Bpu10I	CCTNAGC	1 cut(s)	94
BpuEI	CTTGAG	1 cut(s)	28
BsaBI	GATNNNNATC	1 cut(s)	52
BsaI	GGTCTC	1 cut(s)	378
BsaJI	CCNNGG	2 cut(s)	324, 566
Bsc4I	CCNNNNNNNGG	4 cut(s)	369, 506, 571, 609
Bse118I	RCCGGY	1 cut(s)	219
Bse1I	ACTGG	5 cut(s)	75, 282, 346, 374, 560
Bse3DI	GCAATG	2 cut(s)	603, 630
Bse8I	GATNNNNATC	1 cut(s)	52
BseBI	CCWGG	1 cut(s)	617
BseDI	CCNNGG	2 cut(s)	324, 566
BseGI	GGATG	2 cut(s)	154, 438
BseJI	GATNNNNATC	1 cut(s)	52
BseLI	CCNNNNNNNGG	4 cut(s)	369, 506, 571, 609
BseMI	GCAATG	2 cut(s)	603, 630
BseNI	ACTGG	5 cut(s)	75, 282, 346, 374, 560
BseSI	GKGCMC	2 cut(s)	197, 334
BseXI	GCAGC	2 cut(s)	419, 670
BseYI	CCCAGC	2 cut(s)	290, 608
BshFI	GGCC	4 cut(s)	29, 122, 273, 580
BshNI	GGYRCC	1 cut(s)	612
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	1 cut(s)	220
BslFI	GGGAC	1 cut(s)	294
BslI	CCNNNNNNNGG	4 cut(s)	369, 506, 571, 609
BsmAI	GTCTC	2 cut(s)	378, 666
BsmFI	GGGAC	1 cut(s)	294
BsnI	GGCC	4 cut(s)	29, 122, 273, 580
Bso31I	GGTCTC	1 cut(s)	378
Bsp1286I	GDGCHC	3 cut(s)	197, 298, 334
Bsp1407I	TGTACA	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	47, 177
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	2 cut(s)	336, 548
BspANI	GGCC	4 cut(s)	29, 122, 273, 580
BspLI	GGNNCC	3 cut(s)	474, 601, 614
BspMAI	CTGCAG	1 cut(s)	409
BspT107I	GGYRCC	1 cut(s)	612
BspTNI	GGTCTC	1 cut(s)	378
BsrDI	GCAATG	2 cut(s)	603, 630
BsrFI	RCCGGY	1 cut(s)	219
BsrGI	TGTACA	1 cut(s)	458
BsrI	ACTGG	5 cut(s)	75, 282, 346, 374, 560
BssAI	RCCGGY	1 cut(s)	219
BssECI	CCNNGG	2 cut(s)	324, 566
BssMI	GATC	2 cut(s)	47, 177
BssNAI	GTATAC	1 cut(s)	497
BssT1I	CCWWGG	2 cut(s)	324, 566
Bst1107I	GTATAC	1 cut(s)	497
Bst2UI	CCWGG	1 cut(s)	617
Bst4CI	ACNGT	1 cut(s)	236
BstAUI	TGTACA	1 cut(s)	458
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	1 cut(s)	94
BstDSI	CCRYGG	1 cut(s)	566
BstF5I	GGATG	2 cut(s)	154, 438
BstKTI	GATC	2 cut(s)	50, 180
BstMAI	GTCTC	2 cut(s)	378, 666
BstMBI	GATC	2 cut(s)	47, 177
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 65, 314, 329, 577, 629
BstNI	CCWGG	1 cut(s)	617
BstNSI	RCATGY	2 cut(s)	459, 665
BstSCI	CCNGG	1 cut(s)	615
BstSFI	CTRYAG	4 cut(s)	105, 261, 405, 477
BstSLI	GKGCMC	2 cut(s)	197, 334
BstV1I	GCAGC	2 cut(s)	419, 670
BstZ17I	GTATAC	1 cut(s)	497
BsuRI	GGCC	4 cut(s)	29, 122, 273, 580
BtgI	CCRYGG	1 cut(s)	566
BtrI	CACGTC	1 cut(s)	269
BtsCI	GGATG	2 cut(s)	154, 438
BtsIMutI	CAGTG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr10I	RCCGGY	1 cut(s)	219
Cfr13I	GGNCC	4 cut(s)	121, 232, 472, 579
CsiI	ACCWGGT	1 cut(s)	615
Csp6I	GTAC	2 cut(s)	459, 613
CspCI	CAANNNNNGTGG	2 cut(s)	68, 103
CviAII	CATG	5 cut(s)	429, 456, 506, 567, 662
CviQI	GTAC	2 cut(s)	459, 613
DdeI	CTNAG	1 cut(s)	94
DpnI	GATC	2 cut(s)	49, 179
DpnII	GATC	2 cut(s)	47, 177
EaeI	YGGCCR	1 cut(s)	27
Eco130I	CCWWGG	2 cut(s)	324, 566
Eco24I	GRGCYC	1 cut(s)	298
Eco31I	GGTCTC	1 cut(s)	378
Eco47I	GGWCC	2 cut(s)	232, 472
EcoRII	CCWGG	1 cut(s)	615
EcoT14I	CCWWGG	2 cut(s)	324, 566
EcoT22I	ATGCAT	1 cut(s)	310
EcoT38I	GRGCYC	1 cut(s)	298
ErhI	CCWWGG	2 cut(s)	324, 566
FaeI	CATG	5 cut(s)	432, 459, 509, 570, 665
FaqI	GGGAC	1 cut(s)	294
FatI	CATG	5 cut(s)	428, 455, 505, 566, 661
FauI	CCCGC	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	496
Fnu4HI	GCNGC	3 cut(s)	408, 548, 659
FokI	GGATG	2 cut(s)	141, 445
FriOI	GRGCYC	1 cut(s)	298
Fsp4HI	GCNGC	3 cut(s)	408, 548, 659
FspBI	CTAG	1 cut(s)	377
GluI	GCNGC	3 cut(s)	408, 548, 659
GsaI	CCCAGC	2 cut(s)	294, 612
HaeIII	GGCC	4 cut(s)	29, 122, 273, 580
HapII	CCGG	1 cut(s)	220
Hin1II	CATG	5 cut(s)	432, 459, 509, 570, 665
HindIII	AAGCTT	1 cut(s)	36
HinfI	GANTC	2 cut(s)	205, 342
HpaII	CCGG	1 cut(s)	220
HphI	GGTGA	2 cut(s)	139, 385
Hpy166II	GTNNAC	5 cut(s)	79, 239, 332, 393, 497
Hpy188I	TCNGA	1 cut(s)	177
Hpy188III	TCNNGA	1 cut(s)	45
Hpy8I	GTNNAC	5 cut(s)	79, 239, 332, 393, 497
HpyAV	CCTTC	3 cut(s)	168, 179, 223
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	6 cut(s)	59, 308, 332, 407, 455, 623
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 65, 314, 329, 577, 629
HpyF3I	CTNAG	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	5 cut(s)	432, 459, 509, 570, 665
KpnI	GGTACC	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	47, 177
LmnI	GCTCC	4 cut(s)	251, 314, 533, 599
Lsp1109I	GCAGC	2 cut(s)	419, 670
LweI	GCATC	2 cut(s)	233, 641
MabI	ACCWGGT	1 cut(s)	615
MaeI	CTAG	1 cut(s)	377
MaeII	ACGT	1 cut(s)	268
MalI	GATC	2 cut(s)	49, 179
MboI	GATC	2 cut(s)	47, 177
MboII	GAAGA	3 cut(s)	22, 25, 200
MfeI	CAATTG	2 cut(s)	198, 318
MhlI	GDGCHC	3 cut(s)	197, 298, 334
MluCI	AATT	2 cut(s)	198, 318
MnlI	CCTC	4 cut(s)	52, 58, 155, 648
Mph1103I	ATGCAT	1 cut(s)	310
MseI	TTAA	2 cut(s)	33, 366
MslI	CAYNNNNRTG	2 cut(s)	398, 587
MspA1I	CMGCKG	1 cut(s)	338
MspI	CCGG	1 cut(s)	220
MspR9I	CCNGG	1 cut(s)	617
MunI	CAATTG	2 cut(s)	198, 318
MvaI	CCWGG	1 cut(s)	617
MwoI	GCNNNNNNNGC	6 cut(s)	35, 65, 314, 329, 577, 629
NcoI	CCATGG	1 cut(s)	566
NdeII	GATC	2 cut(s)	47, 177
NlaIII	CATG	5 cut(s)	432, 459, 509, 570, 665
NlaIV	GGNNCC	3 cut(s)	474, 601, 614
NsiI	ATGCAT	1 cut(s)	310
NspI	RCATGY	2 cut(s)	459, 665
OliI	CACNNNNGTG	1 cut(s)	398
PfeI	GAWTC	2 cut(s)	205, 342
PflMI	CCANNNNNTGG	2 cut(s)	369, 506
PkrI	GCNGC	3 cut(s)	409, 549, 660
Psp6I	CCWGG	1 cut(s)	615
PspFI	CCCAGC	2 cut(s)	290, 608
PspGI	CCWGG	1 cut(s)	615
PspN4I	GGNNCC	3 cut(s)	474, 601, 614
PspPI	GGNCC	4 cut(s)	121, 232, 472, 579
PstI	CTGCAG	1 cut(s)	409
PstNI	CAGNNNCTG	1 cut(s)	413
RsaI	GTAC	2 cut(s)	460, 614
RsaNI	GTAC	2 cut(s)	459, 613
RseI	CAYNNNNRTG	2 cut(s)	398, 587
SaqAI	TTAA	2 cut(s)	33, 366
SatI	GCNGC	3 cut(s)	408, 548, 659
Sau3AI	GATC	2 cut(s)	47, 177
Sau96I	GGNCC	4 cut(s)	121, 232, 472, 579
ScrFI	CCNGG	1 cut(s)	617
SduI	GDGCHC	3 cut(s)	197, 298, 334
SexAI	ACCWGGT	1 cut(s)	615
SfaNI	GCATC	2 cut(s)	233, 641
SfcI	CTRYAG	4 cut(s)	105, 261, 405, 477
SinI	GGWCC	2 cut(s)	232, 472
SmiMI	CAYNNNNRTG	2 cut(s)	398, 587
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	2 cut(s)	198, 318
SsiI	CCGC	2 cut(s)	336, 548
SspMI	CTAG	1 cut(s)	377
StyD4I	CCNGG	1 cut(s)	615
StyI	CCWWGG	2 cut(s)	324, 566
TaaI	ACNGT	1 cut(s)	236
TaiI	ACGT	1 cut(s)	271
TasI	AATT	2 cut(s)	198, 318
TatI	WGTACW	1 cut(s)	458
TauI	GCSGC	1 cut(s)	550
TfiI	GAWTC	2 cut(s)	205, 342
Tru1I	TTAA	2 cut(s)	33, 366
Tru9I	TTAA	2 cut(s)	33, 366
TscAI	CASTG	1 cut(s)	75
TseI	GCWGC	2 cut(s)	407, 658
TspDTI	ATGAA	2 cut(s)	17, 414
TspRI	CASTG	1 cut(s)	75
Van91I	CCANNNNNTGG	2 cut(s)	369, 506
VneI	GTGCAC	1 cut(s)	330
VpaK11BI	GGWCC	2 cut(s)	232, 472
XceI	RCATGY	2 cut(s)	459, 665
XcmI	CCANNNNNNNNNTGG	2 cut(s)	86, 573
XmiI	GTMKAC	1 cut(s)	496
XspI	CTAG	1 cut(s)	377
Zsp2I	ATGCAT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.