Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007942

Physical Location & Seq

Genomic Coordinates Reverse (-)

34059315 .. 34060137

Gene Structure 823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0303900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAAGAACTCGGTGTCGGATTGCAGTTTTTACATTAACAGTGAAGAAGAAGATGATGAGGAGAAGGACAAGAAAAGCATAGAAGATGGGAATGATTCTGATTCTTCGCGCCATTTCACAGACTTTCTTTGGGCTCACATCTACGAAAGATTCTCAACAGGTTTTAGCTGGGGTTTGGGATTAGTGGGTTTTGTTTTGGCTATGTTTGTATACAAATGCATTACTGTTTCATACATGGGAGAAAAGCAATTTGTGAAAGAGAAAAGAGAAGAAGAAATACATGTGCTGTCTGTGCGGAGACAGTTAAATGGGTCGCATATGGGCCCTGTGGCTATCGAGAGGTCTGCTCTACCTGCATTTTTCGCCTCTGTTTCATCTATGGATCTGCCTGCGCAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000234 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006665 GO:0006666 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016740 GO:0016741 GO:0019538 GO:0019637 GO:0031984 GO:0032259 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042180 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0046519 GO:0055114 GO:0071704 GO:0090407 GO:0097164 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko03040 map00563 map01100 map03040

Pfam Domains

Protein Families

PIG-F

Protein Analysis

133

Amino Acids

15.18

Weight (kDa)

4.89

Isoelectric Point (pI)

66.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16040 AT1G16040 AT1G16040 AT1G16040
fragaria_vesca	FvH4_6g28300 FvH4_6g28300 FvH4_6g28300
malus_domestica	MD12G1013200.v1.1 MD14G1138800.v1.1
prunus_persica	Prupe.3G103300_v2.0.a1
pyrus_communis	pycom12g01050
rosa_chinensis	RchiOBHm_Chr2g0132361
rosa_laevigata	RLG00000019249
rosa_multiflora	Rmu_sc0000781.1_g000005 Rmu_sc0002795.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112120
rosa_rugosa	Rorug02G0303900 Rorug02G0304000 Rorug02G0304100
rosa_samantha	Rh2AG357000 Rh2BG363500 Rh2CG340500 Rh2DG380200
rosa_wichuraiana	Rw2G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	361
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	109
AciI	CCGC	1 cut(s)	295
AclWI	GGATC	1 cut(s)	390
AflIII	ACRYGT	1 cut(s)	280
AluBI	AGCT	1 cut(s)	168
AluI	AGCT	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	292
AlwI	GGATC	1 cut(s)	390
AoxI	GGCC	1 cut(s)	322
ApaI	GGGCCC	1 cut(s)	326
AspLEI	GCGC	2 cut(s)	111, 394
AspS9I	GGNCC	2 cut(s)	322, 323
BaeGI	GKGCMC	1 cut(s)	326
BanII	GRGCYC	2 cut(s)	136, 326
BarI	GAAGNNNNNNTAC	2 cut(s)	261, 293
BccI	CCATC	1 cut(s)	80
BcgI	CGANNNNNNTGC	2 cut(s)	326, 360
BcoDI	GTCTC	1 cut(s)	292
BfuAI	ACCTGC	1 cut(s)	361
BmgT120I	GGNCC	2 cut(s)	322, 323
BmiI	GGNNCC	1 cut(s)	324
BplI	GAGNNNNNCTC	2 cut(s)	331, 363
BseRI	GAGGAG	1 cut(s)	74
BseSI	GKGCMC	1 cut(s)	326
BseYI	CCCAGC	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	109
BshFI	GGCC	1 cut(s)	324
BsmAI	GTCTC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	324
Bsp120I	GGGCCC	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	136, 326
Bsp143I	GATC	1 cut(s)	382
BspACI	CCGC	1 cut(s)	295
BspANI	GGCC	1 cut(s)	324
BspFNI	CGCG	1 cut(s)	109
BspLI	GGNNCC	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	361
BspPI	GGATC	1 cut(s)	390
BssMI	GATC	1 cut(s)	382
BssNAI	GTATAC	1 cut(s)	211
Bst1107I	GTATAC	1 cut(s)	211
Bst4CI	ACNGT	3 cut(s)	41, 226, 303
BstC8I	GCNNGC	1 cut(s)	390
BstFNI	CGCG	1 cut(s)	109
BstHHI	GCGC	2 cut(s)	111, 394
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	3 cut(s)	292, 353, 362
BstNSI	RCATGY	1 cut(s)	284
BstSLI	GKGCMC	1 cut(s)	326
BstUI	CGCG	1 cut(s)	109
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BstZ17I	GTATAC	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	46
BveI	ACCTGC	1 cut(s)	361
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	2 cut(s)	111, 394
Cfr13I	GGNCC	2 cut(s)	322, 323
CviAII	CATG	2 cut(s)	235, 281
CviJI	RGCY	5 cut(s)	134, 168, 200, 324, 332
CviKI_1	RGCY	5 cut(s)	134, 168, 200, 324, 332
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
Eco24I	GRGCYC	2 cut(s)	136, 326
EcoO109I	RGGNCCY	1 cut(s)	323
EcoT22I	ATGCAT	1 cut(s)	221
EcoT38I	GRGCYC	2 cut(s)	136, 326
FaeI	CATG	2 cut(s)	238, 284
FaiI	YATR	9 cut(s)	80, 203, 211, 232, 236, 282, 318, 320, 380
FatI	CATG	2 cut(s)	234, 280
FauNDI	CATATG	1 cut(s)	318
FblI	GTMKAC	1 cut(s)	210
FriOI	GRGCYC	2 cut(s)	136, 326
FspI	TGCGCA	1 cut(s)	393
GlaI	GCGC	2 cut(s)	110, 393
GsaI	CCCAGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	324
HhaI	GCGC	2 cut(s)	111, 394
Hin1II	CATG	2 cut(s)	238, 284
Hin6I	GCGC	2 cut(s)	109, 392
HinP1I	GCGC	2 cut(s)	109, 392
HinfI	GANTC	3 cut(s)	95, 101, 150
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	19, 100
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	3 cut(s)	41, 226, 303
HpyCH4V	TGCA	3 cut(s)	24, 219, 356
HpyF10VI	GCNNNNNNNGC	3 cut(s)	292, 353, 362
Hsp92II	CATG	2 cut(s)	238, 284
HspAI	GCGC	2 cut(s)	109, 392
Kzo9I	GATC	1 cut(s)	382
LpnPI	CCDG	4 cut(s)	144, 154, 339, 366
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	8 cut(s)	16, 56, 59, 62, 95, 96, 281, 284
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	136, 326
MluCI	AATT	1 cut(s)	248
MnlI	CCTC	3 cut(s)	52, 333, 376
Mph1103I	ATGCAT	1 cut(s)	221
MseI	TTAA	2 cut(s)	36, 305
MvnI	CGCG	1 cut(s)	109
MwoI	GCNNNNNNNGC	3 cut(s)	292, 353, 362
NdeI	CATATG	1 cut(s)	318
NdeII	GATC	1 cut(s)	382
NlaIII	CATG	2 cut(s)	238, 284
NlaIV	GGNNCC	1 cut(s)	324
NsbI	TGCGCA	1 cut(s)	393
NsiI	ATGCAT	1 cut(s)	221
NspI	RCATGY	1 cut(s)	284
PciI	ACATGT	1 cut(s)	280
PfeI	GAWTC	3 cut(s)	95, 101, 150
PscI	ACATGT	1 cut(s)	280
PspFI	CCCAGC	1 cut(s)	168
PspN4I	GGNNCC	1 cut(s)	324
PspOMI	GGGCCC	1 cut(s)	322
PspPI	GGNCC	2 cut(s)	322, 323
PsuI	RGATCY	1 cut(s)	382
SaqAI	TTAA	2 cut(s)	36, 305
Sau3AI	GATC	1 cut(s)	382
Sau96I	GGNCC	2 cut(s)	322, 323
SduI	GDGCHC	2 cut(s)	136, 326
SetI	ASST	4 cut(s)	163, 170, 344, 355
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	1 cut(s)	295
TaaI	ACNGT	3 cut(s)	41, 226, 303
TaqI	TCGA	1 cut(s)	336
TasI	AATT	1 cut(s)	248
TfiI	GAWTC	3 cut(s)	95, 101, 150
Tru1I	TTAA	2 cut(s)	36, 305
Tru9I	TTAA	2 cut(s)	36, 305
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	17, 219, 363
TspRI	CASTG	1 cut(s)	46
XceI	RCATGY	1 cut(s)	284
XmiI	GTMKAC	1 cut(s)	210
Zsp2I	ATGCAT	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.