Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0007942

Physical Location & Seq

Genomic Coordinates Reverse (-)

52644044 .. 52646734

Gene Structure 2691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG357000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGGCGTGAGAGCCTCCTCAATCTCAGTATCAACATCAGAGGCACTGGTGGTCCACCTGACCATTGGCTTAGGATTAGCTCTCTGTTTCTCGGTTGCCCACAATGTCCATTTCATCAACCTCACCTCCCATCCTTCTCAGGTCCTCGGTTTGATCTGGGCCTTTCAATGCCCAACTGTGATCCTTCTTTACAGCCGCTACCGGAAGGATCCGGAAAGATGCTCTTACTGGAAAGCTGTAGGACGTGGCGTGCTGGGACTTCCTGCTGGGGCTGTGGTAAATGCATTAGGAGCAATTGCGTTGGGAGCACCAGTGGGCATCCAGTATCTGCCAAAGACCATTAACTGGTCTCTTATGATGTCACTGTTCACAATTGTGCCTGCAGCTTCTGTTTTTGGTTCATCATGGACAGATTGGCAACGTATATTTGCATGTACAAAGCCAATTGATCCTGTAGATTTTATGATTTGTCTACCTGCACATGGAGTTGTTATTGGAGCTTGGTTTGGGGCCTGGCCAGTACCACTTGATTGGGAAAGACCATGGCAGGAATGGCCTATTTGTGTAAGTTATGGAGCCATTGCTGGGTACTTGGTTTCTTTGGTGGCATCATTTGGATTTATACTGGTGCGGCAACATGTCAAAGGAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000234 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006665 GO:0006666 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016740 GO:0016741 GO:0019538 GO:0019637 GO:0031984 GO:0032259 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042180 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0046519 GO:0055114 GO:0071704 GO:0090407 GO:0097164 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko03040 map00563 map01100 map03040

Pfam Domains

Protein Families

PIG-F

Protein Analysis

217

Amino Acids

23.61

Weight (kDa)

8.58

Isoelectric Point (pI)

24.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-F	PF06699	35 - 204	1.5e-43	GPI biosynthesis protein family Pig-F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16040 AT1G16040 AT1G16040 AT1G16040
fragaria_vesca	FvH4_6g28300 FvH4_6g28300 FvH4_6g28300
malus_domestica	MD12G1013200.v1.1 MD14G1138800.v1.1
prunus_persica	Prupe.3G103300_v2.0.a1
pyrus_communis	pycom12g01050
rosa_chinensis	RchiOBHm_Chr2g0132361
rosa_laevigata	RLG00000019249
rosa_multiflora	Rmu_sc0000781.1_g000005 Rmu_sc0002795.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112120
rosa_rugosa	Rorug02G0303900 Rorug02G0304000 Rorug02G0304100
rosa_samantha	Rh2AG357000 Rh2BG363500 Rh2CG340500 Rh2DG380200
rosa_wichuraiana	Rw2G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AccB7I	CCANNNNNTGG	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	472
AccIII	TCCGGA	1 cut(s)	211
AciI	CCGC	2 cut(s)	196, 631
AclWI	GGATC	4 cut(s)	175, 203, 216, 443
AcoI	YGGCCR	1 cut(s)	515
AfaI	GTAC	3 cut(s)	436, 522, 590
AfiI	CCNNNNNNNGG	3 cut(s)	345, 482, 585
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	1 cut(s)	167
AjiI	CACGTC	1 cut(s)	245
AjnI	CCWGG	1 cut(s)	512
AleI	CACNNNNGTG	1 cut(s)	374
AluBI	AGCT	4 cut(s)	80, 236, 386, 500
AluI	AGCT	4 cut(s)	80, 236, 386, 500
Alw21I	GWGCWC	1 cut(s)	310
Alw26I	GTCTC	2 cut(s)	354, 642
AlwI	GGATC	4 cut(s)	175, 203, 216, 443
AlwNI	CAGNNNCTG	2 cut(s)	328, 389
Aor13HI	TCCGGA	1 cut(s)	211
AoxI	GGCC	4 cut(s)	159, 510, 515, 554
ApeKI	GCWGC	1 cut(s)	383
AspS9I	GGNCC	4 cut(s)	52, 142, 159, 510
AsuHPI	GGTGA	1 cut(s)	115
AvaII	GGWCC	2 cut(s)	52, 142
BalI	TGGCCA	1 cut(s)	517
BamHI	GGATCC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	1 cut(s)	138
BciT130I	CCWGG	1 cut(s)	514
BcoDI	GTCTC	2 cut(s)	354, 642
BfmI	CTRYAG	3 cut(s)	237, 381, 453
BfuAI	ACCTGC	1 cut(s)	484
BisI	GCNGC	3 cut(s)	196, 384, 632
BlsI	GCNGC	3 cut(s)	197, 385, 633
Bme1390I	CCNGG	1 cut(s)	514
Bme18I	GGWCC	2 cut(s)	52, 142
BmgBI	CACGTC	1 cut(s)	245
BmgT120I	GGNCC	4 cut(s)	52, 142, 159, 510
BmiI	GGNNCC	3 cut(s)	210, 511, 577
BmrFI	CCNGG	1 cut(s)	514
BmsI	GCATC	3 cut(s)	209, 327, 617
Bpu10I	CCTNAGC	1 cut(s)	70
BsaI	GGTCTC	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	145, 542
BsaWI	WCCGGW	2 cut(s)	201, 211
BsaXI	ACNNNNNCTCC	4 cut(s)	110, 140, 297, 327
Bsc4I	CCNNNNNNNGG	3 cut(s)	345, 482, 585
Bse1I	ACTGG	7 cut(s)	51, 233, 311, 322, 350, 518, 630
Bse3DI	GCAATG	1 cut(s)	579
BseAI	TCCGGA	1 cut(s)	211
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	2 cut(s)	145, 542
BseGI	GGATG	2 cut(s)	130, 318
BseLI	CCNNNNNNNGG	3 cut(s)	345, 482, 585
BseMI	GCAATG	1 cut(s)	579
BseMII	CTCAG	2 cut(s)	39, 152
BseNI	ACTGG	7 cut(s)	51, 233, 311, 322, 350, 518, 630
BseRI	GAGGAG	1 cut(s)	7
BseXI	GCAGC	1 cut(s)	395
BseYI	CCCAGC	3 cut(s)	253, 266, 584
BsgI	GTGCAG	1 cut(s)	462
BshFI	GGCC	4 cut(s)	161, 512, 517, 556
BsiHKAI	GWGCWC	1 cut(s)	310
BsiSI	CCGG	2 cut(s)	202, 212
BslFI	GGGAC	1 cut(s)	270
BslI	CCNNNNNNNGG	3 cut(s)	345, 482, 585
BsmAI	GTCTC	2 cut(s)	354, 642
BsmFI	GGGAC	1 cut(s)	270
BsnI	GGCC	4 cut(s)	161, 512, 517, 556
Bso31I	GGTCTC	1 cut(s)	354
Bsp1286I	GDGCHC	1 cut(s)	310
Bsp13I	TCCGGA	1 cut(s)	211
Bsp1407I	TGTACA	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	153, 180, 208, 448
Bsp19I	CCATGG	1 cut(s)	542
BspACI	CCGC	2 cut(s)	196, 631
BspANI	GGCC	4 cut(s)	161, 512, 517, 556
BspCNI	CTCAG	2 cut(s)	38, 151
BspEI	TCCGGA	1 cut(s)	211
BspLI	GGNNCC	3 cut(s)	210, 511, 577
BspMAI	CTGCAG	1 cut(s)	385
BspMI	ACCTGC	1 cut(s)	484
BspPI	GGATC	4 cut(s)	175, 203, 216, 443
BspTNI	GGTCTC	1 cut(s)	354
BsrDI	GCAATG	1 cut(s)	579
BsrGI	TGTACA	1 cut(s)	434
BsrI	ACTGG	7 cut(s)	51, 233, 311, 322, 350, 518, 630
BssECI	CCNNGG	2 cut(s)	145, 542
BssMI	GATC	4 cut(s)	153, 180, 208, 448
BssT1I	CCWWGG	1 cut(s)	542
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	2 cut(s)	178, 366
BstAUI	TGTACA	1 cut(s)	434
BstC8I	GCNNGC	2 cut(s)	251, 381
BstDEI	CTNAG	3 cut(s)	25, 70, 138
BstDSI	CCRYGG	1 cut(s)	542
BstF5I	GGATG	2 cut(s)	130, 318
BstKTI	GATC	4 cut(s)	156, 183, 211, 451
BstMAI	GTCTC	2 cut(s)	354, 642
BstMBI	GATC	4 cut(s)	153, 180, 208, 448
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 305, 553
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	2 cut(s)	435, 641
BstSCI	CCNGG	1 cut(s)	512
BstSFI	CTRYAG	3 cut(s)	237, 381, 453
BstV1I	GCAGC	1 cut(s)	395
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	4 cut(s)	161, 512, 517, 556
BtgI	CCRYGG	1 cut(s)	542
BtrI	CACGTC	1 cut(s)	245
BtsCI	GGATG	2 cut(s)	130, 318
BtsIMutI	CAGTG	3 cut(s)	44, 318, 362
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	251, 381
CaiI	CAGNNNCTG	2 cut(s)	328, 389
Cfr13I	GGNCC	4 cut(s)	52, 142, 159, 510
Csp6I	GTAC	3 cut(s)	435, 521, 589
CviAII	CATG	5 cut(s)	405, 432, 482, 543, 638
CviQI	GTAC	3 cut(s)	435, 521, 589
DdeI	CTNAG	3 cut(s)	25, 70, 138
DpnI	GATC	4 cut(s)	155, 182, 210, 450
DpnII	GATC	4 cut(s)	153, 180, 208, 448
EaeI	YGGCCR	1 cut(s)	515
Eco130I	CCWWGG	1 cut(s)	542
Eco31I	GGTCTC	1 cut(s)	354
Eco47I	GGWCC	2 cut(s)	52, 142
EcoO109I	RGGNCCY	2 cut(s)	142, 510
EcoRII	CCWGG	1 cut(s)	512
EcoT14I	CCWWGG	1 cut(s)	542
EcoT22I	ATGCAT	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	542
FaeI	CATG	5 cut(s)	408, 435, 485, 546, 641
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FaqI	GGGAC	1 cut(s)	270
FatI	CATG	5 cut(s)	404, 431, 481, 542, 637
FblI	GTMKAC	1 cut(s)	472
Fnu4HI	GCNGC	3 cut(s)	196, 384, 632
FokI	GGATG	2 cut(s)	117, 305
Fsp4HI	GCNGC	3 cut(s)	196, 384, 632
GluI	GCNGC	3 cut(s)	196, 384, 632
GsaI	CCCAGC	3 cut(s)	257, 270, 588
HaeIII	GGCC	4 cut(s)	161, 512, 517, 556
HapII	CCGG	2 cut(s)	202, 212
Hin1II	CATG	5 cut(s)	408, 435, 485, 546, 641
HpaII	CCGG	2 cut(s)	202, 212
HphI	GGTGA	1 cut(s)	115
Hpy166II	GTNNAC	3 cut(s)	55, 369, 473
Hpy188I	TCNGA	1 cut(s)	40
Hpy188III	TCNNGA	1 cut(s)	212
Hpy8I	GTNNAC	3 cut(s)	55, 369, 473
HpyAV	CCTTC	3 cut(s)	144, 194, 199
HpyCH4III	ACNGT	2 cut(s)	178, 366
HpyCH4IV	ACGT	2 cut(s)	244, 421
HpyCH4V	TGCA	4 cut(s)	284, 383, 431, 479
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 305, 553
HpyF3I	CTNAG	3 cut(s)	25, 70, 138
HpySE526I	ACGT	2 cut(s)	244, 421
Hsp92II	CATG	5 cut(s)	408, 435, 485, 546, 641
Kpn2I	TCCGGA	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	153, 180, 208, 448
LmnI	GCTCC	4 cut(s)	290, 305, 497, 575
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	3 cut(s)	209, 327, 617
MaeII	ACGT	2 cut(s)	244, 421
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	4 cut(s)	155, 182, 210, 450
MboI	GATC	4 cut(s)	153, 180, 208, 448
MfeI	CAATTG	3 cut(s)	294, 372, 444
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	1 cut(s)	310
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	3 cut(s)	294, 372, 444
MluNI	TGGCCA	1 cut(s)	517
MnlI	CCTC	6 cut(s)	25, 28, 34, 131, 136, 155
Mox20I	TGGCCA	1 cut(s)	517
Mph1103I	ATGCAT	1 cut(s)	286
MroI	TCCGGA	1 cut(s)	211
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	374
Msp20I	TGGCCA	1 cut(s)	517
MspI	CCGG	2 cut(s)	202, 212
MspR9I	CCNGG	1 cut(s)	514
MunI	CAATTG	3 cut(s)	294, 372, 444
MvaI	CCWGG	1 cut(s)	514
MwoI	GCNNNNNNNGC	3 cut(s)	290, 305, 553
NcoI	CCATGG	1 cut(s)	542
NdeII	GATC	4 cut(s)	153, 180, 208, 448
NlaIII	CATG	5 cut(s)	408, 435, 485, 546, 641
NlaIV	GGNNCC	3 cut(s)	210, 511, 577
NmuCI	GTSAC	1 cut(s)	360
NsiI	ATGCAT	1 cut(s)	286
NspI	RCATGY	2 cut(s)	435, 641
OliI	CACNNNNGTG	1 cut(s)	374
PciI	ACATGT	1 cut(s)	637
PflMI	CCANNNNNTGG	1 cut(s)	345
PkrI	GCNGC	3 cut(s)	197, 385, 633
PpuMI	RGGWCCY	1 cut(s)	142
PscI	ACATGT	1 cut(s)	637
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	512
PspFI	CCCAGC	3 cut(s)	253, 266, 584
PspGI	CCWGG	1 cut(s)	512
PspN4I	GGNNCC	3 cut(s)	210, 511, 577
PspPI	GGNCC	4 cut(s)	52, 142, 159, 510
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	385
PstNI	CAGNNNCTG	2 cut(s)	328, 389
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	3 cut(s)	436, 522, 590
RsaNI	GTAC	3 cut(s)	435, 521, 589
RseI	CAYNNNNRTG	1 cut(s)	374
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	196, 384, 632
Sau3AI	GATC	4 cut(s)	153, 180, 208, 448
Sau96I	GGNCC	4 cut(s)	52, 142, 159, 510
ScrFI	CCNGG	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	310
SfaNI	GCATC	3 cut(s)	209, 327, 617
SfcI	CTRYAG	3 cut(s)	237, 381, 453
SinI	GGWCC	2 cut(s)	52, 142
SmiMI	CAYNNNNRTG	1 cut(s)	374
Sse9I	AATT	3 cut(s)	294, 372, 444
SsiI	CCGC	2 cut(s)	196, 631
StyD4I	CCNGG	1 cut(s)	512
StyI	CCWWGG	1 cut(s)	542
TaaI	ACNGT	2 cut(s)	178, 366
TaiI	ACGT	2 cut(s)	247, 424
TasI	AATT	3 cut(s)	294, 372, 444
TatI	WGTACW	1 cut(s)	434
TauI	GCSGC	2 cut(s)	198, 634
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	3 cut(s)	51, 318, 369
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	1 cut(s)	383
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	2 cut(s)	103, 390
TspRI	CASTG	3 cut(s)	51, 318, 369
Van91I	CCANNNNNTGG	1 cut(s)	345
VpaK11BI	GGWCC	2 cut(s)	52, 142
XceI	RCATGY	2 cut(s)	435, 641
XcmI	CCANNNNNNNNNTGG	2 cut(s)	62, 549
XmiI	GTMKAC	1 cut(s)	472
Zsp2I	ATGCAT	1 cut(s)	286

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.