Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0007942

Physical Location & Seq

Genomic Coordinates Reverse (-)

45510351 .. 45513657

Gene Structure 3307 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG340500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGAAGCCGAAGAAGAGCAAGATGGGCGTGAGAGCCTCCTCAATCTCAGTATCAACATCAGAGGCACTGGTGGTCCACCTGACCATTGGCTTAGGATTAGCTCTCTGTTTCTCGGTTGCCCACAATGTCCATTTCATCAACCTCACCTCCCATCCTTCTCAGGTCCTCGGTTTGATCTGGGCCTTTCAATGCCCAACTGTGATCCTTCTTTACAGCCGCTACCGGAAGGACCCGGAAAGATGCTCTTACTGGAAAGCTGTAGGACGTGGCCTGCTGGGACTTCCTGCTGGGGCTGTGGTAAATGCATTAGGAGCAATTGCGTTGGGAGCACCTGTGGGCATTCAGTATCTGCCAAAGACCATTAACTGGTCTCTTATGATGTCACTGTTCACAATTGTGCCTGCAGCTTCTGTTTTTGGTTCATCATGGACAGATTGGCAACGTATATTTGCATGTACAAAGCCAATTGATCCTGTAGATTTTATGATTTGTCTACCTGCACATGGAGTTGTTATCGGAGCTTGGTTTGGGGCCTGGCCAGTACCACTTGATTGGGAAAGACCATGGCAGGTACTATCACCGTCCTCTTTTGTTTTTTCCCCAATTCTTCCTGGTTTGCTTCATGTGCAAGATTATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000234 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006665 GO:0006666 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016740 GO:0016741 GO:0019538 GO:0019637 GO:0031984 GO:0032259 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042180 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0046519 GO:0055114 GO:0071704 GO:0090407 GO:0097164 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko03040 map00563 map01100 map03040

Pfam Domains

Protein Families

PIG-F

Protein Analysis

213

Amino Acids

23.29

Weight (kDa)

9.22

Isoelectric Point (pI)

34.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-F	PF06699	42 - 191	3.2e-34	GPI biosynthesis protein family Pig-F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16040 AT1G16040 AT1G16040 AT1G16040
fragaria_vesca	FvH4_6g28300 FvH4_6g28300 FvH4_6g28300
malus_domestica	MD12G1013200.v1.1 MD14G1138800.v1.1
prunus_persica	Prupe.3G103300_v2.0.a1
pyrus_communis	pycom12g01050
rosa_chinensis	RchiOBHm_Chr2g0132361
rosa_laevigata	RLG00000019249
rosa_multiflora	Rmu_sc0000781.1_g000005 Rmu_sc0002795.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112120
rosa_rugosa	Rorug02G0303900 Rorug02G0304000 Rorug02G0304100
rosa_samantha	Rh2AG357000 Rh2BG363500 Rh2CG340500 Rh2DG380200
rosa_wichuraiana	Rw2G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	505, 559
AccB7I	CCANNNNNTGG	1 cut(s)	366
AccI	GTMKAC	1 cut(s)	493
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	196, 464
AcoI	YGGCCR	1 cut(s)	536
AfaI	GTAC	3 cut(s)	457, 543, 573
AfiI	CCNNNNNNNGG	2 cut(s)	366, 503
AgsI	TTSAA	1 cut(s)	188
AjiI	CACGTC	1 cut(s)	266
AjnI	CCWGG	2 cut(s)	533, 610
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	4 cut(s)	101, 257, 407, 521
AluI	AGCT	4 cut(s)	101, 257, 407, 521
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	196, 464
AlwNI	CAGNNNCTG	2 cut(s)	349, 410
AoxI	GGCC	4 cut(s)	180, 268, 531, 536
ApeKI	GCWGC	1 cut(s)	404
AspS9I	GGNCC	5 cut(s)	73, 163, 180, 229, 531
AsuC2I	CCSGG	1 cut(s)	233
AsuHPI	GGTGA	2 cut(s)	136, 570
AvaII	GGWCC	3 cut(s)	73, 163, 229
BalI	TGGCCA	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	1 cut(s)	416
BccI	CCATC	2 cut(s)	16, 159
BciT130I	CCWGG	2 cut(s)	535, 612
BcnI	CCSGG	1 cut(s)	233
BcoDI	GTCTC	1 cut(s)	375
BfmI	CTRYAG	3 cut(s)	258, 402, 474
BfuAI	ACCTGC	2 cut(s)	505, 559
BisI	GCNGC	2 cut(s)	217, 405
BlsI	GCNGC	2 cut(s)	218, 406
Bme1390I	CCNGG	3 cut(s)	233, 535, 612
Bme18I	GGWCC	3 cut(s)	73, 163, 229
BmgBI	CACGTC	1 cut(s)	266
BmgT120I	GGNCC	5 cut(s)	73, 163, 180, 229, 531
BmiI	GGNNCC	2 cut(s)	231, 532
BmrFI	CCNGG	3 cut(s)	233, 535, 612
BmsI	GCATC	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	91
BpuMI	CCSGG	1 cut(s)	233
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	166, 563
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 318, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 503
Bse1I	ACTGG	4 cut(s)	72, 254, 371, 539
BseBI	CCWGG	2 cut(s)	535, 612
BseDI	CCNNGG	2 cut(s)	166, 563
BseGI	GGATG	1 cut(s)	151
BseLI	CCNNNNNNNGG	2 cut(s)	366, 503
BseMII	CTCAG	2 cut(s)	60, 173
BseNI	ACTGG	4 cut(s)	72, 254, 371, 539
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	1 cut(s)	416
BseYI	CCCAGC	2 cut(s)	274, 287
BsgI	GTGCAG	1 cut(s)	483
BshFI	GGCC	4 cut(s)	182, 270, 533, 538
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	2 cut(s)	223, 233
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	2 cut(s)	366, 503
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	1 cut(s)	291
BsmI	GAATGC	1 cut(s)	339
BsnI	GGCC	4 cut(s)	182, 270, 533, 538
Bso31I	GGTCTC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	455
Bsp143I	GATC	3 cut(s)	174, 201, 469
Bsp19I	CCATGG	1 cut(s)	563
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	4 cut(s)	182, 270, 533, 538
BspCNI	CTCAG	2 cut(s)	59, 172
BspLI	GGNNCC	2 cut(s)	231, 532
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	2 cut(s)	505, 559
BspPI	GGATC	2 cut(s)	196, 464
BspQI	GCTCTTC	1 cut(s)	8
BspTNI	GGTCTC	1 cut(s)	375
BsrGI	TGTACA	1 cut(s)	455
BsrI	ACTGG	4 cut(s)	72, 254, 371, 539
BssECI	CCNNGG	2 cut(s)	166, 563
BssMI	GATC	3 cut(s)	174, 201, 469
BssT1I	CCWWGG	1 cut(s)	563
Bst2UI	CCWGG	2 cut(s)	535, 612
Bst4CI	ACNGT	3 cut(s)	199, 387, 582
Bst6I	CTCTTC	1 cut(s)	8
BstAUI	TGTACA	1 cut(s)	455
BstC8I	GCNNGC	2 cut(s)	272, 402
BstDEI	CTNAG	3 cut(s)	46, 91, 159
BstDSI	CCRYGG	1 cut(s)	563
BstF5I	GGATG	1 cut(s)	151
BstKTI	GATC	3 cut(s)	177, 204, 472
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	174, 201, 469
BstMWI	GCNNNNNNNGC	4 cut(s)	24, 311, 326, 625
BstNI	CCWGG	2 cut(s)	535, 612
BstNSI	RCATGY	1 cut(s)	456
BstSCI	CCNGG	3 cut(s)	231, 533, 610
BstSFI	CTRYAG	3 cut(s)	258, 402, 474
BstV1I	GCAGC	1 cut(s)	416
BstXI	CCANNNNNNTGG	1 cut(s)	552
BsuRI	GGCC	4 cut(s)	182, 270, 533, 538
BtgI	CCRYGG	1 cut(s)	563
BtrI	CACGTC	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	151
BtsIMutI	CAGTG	2 cut(s)	65, 383
BveI	ACCTGC	2 cut(s)	505, 559
Cac8I	GCNNGC	2 cut(s)	272, 402
CaiI	CAGNNNCTG	2 cut(s)	349, 410
Cfr13I	GGNCC	5 cut(s)	73, 163, 180, 229, 531
Csp6I	GTAC	3 cut(s)	456, 542, 572
CviAII	CATG	5 cut(s)	426, 453, 503, 564, 623
CviQI	GTAC	3 cut(s)	456, 542, 572
DdeI	CTNAG	3 cut(s)	46, 91, 159
DpnI	GATC	3 cut(s)	176, 203, 471
DpnII	GATC	3 cut(s)	174, 201, 469
EaeI	YGGCCR	1 cut(s)	536
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
Eco130I	CCWWGG	1 cut(s)	563
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	3 cut(s)	73, 163, 229
EcoO109I	RGGNCCY	3 cut(s)	163, 229, 531
EcoRII	CCWGG	2 cut(s)	533, 610
EcoT14I	CCWWGG	1 cut(s)	563
EcoT22I	ATGCAT	1 cut(s)	307
ErhI	CCWWGG	1 cut(s)	563
FaeI	CATG	5 cut(s)	429, 456, 506, 567, 626
FaiI	YATR	8 cut(s)	377, 427, 446, 454, 485, 504, 565, 624
FalI	AAGNNNNNCTT	2 cut(s)	229, 261
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	5 cut(s)	425, 452, 502, 563, 622
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	217, 405
FokI	GGATG	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	217, 405
GluI	GCNGC	2 cut(s)	217, 405
GsaI	CCCAGC	2 cut(s)	278, 291
HaeIII	GGCC	4 cut(s)	182, 270, 533, 538
HapII	CCGG	2 cut(s)	223, 233
Hin1II	CATG	5 cut(s)	429, 456, 506, 567, 626
HpaII	CCGG	2 cut(s)	223, 233
HphI	GGTGA	2 cut(s)	136, 570
Hpy166II	GTNNAC	3 cut(s)	76, 390, 494
Hpy188I	TCNGA	2 cut(s)	61, 518
Hpy8I	GTNNAC	3 cut(s)	76, 390, 494
HpyAV	CCTTC	3 cut(s)	165, 215, 220
HpyCH4III	ACNGT	3 cut(s)	199, 387, 582
HpyCH4IV	ACGT	2 cut(s)	265, 442
HpyCH4V	TGCA	5 cut(s)	305, 404, 452, 500, 628
HpyF10VI	GCNNNNNNNGC	4 cut(s)	24, 311, 326, 625
HpyF3I	CTNAG	3 cut(s)	46, 91, 159
HpySE526I	ACGT	2 cut(s)	265, 442
Hsp92II	CATG	5 cut(s)	429, 456, 506, 567, 626
Kzo9I	GATC	3 cut(s)	174, 201, 469
LguI	GCTCTTC	1 cut(s)	8
LmnI	GCTCC	3 cut(s)	311, 326, 518
Lsp1109I	GCAGC	1 cut(s)	416
LweI	GCATC	1 cut(s)	230
MaeII	ACGT	2 cut(s)	265, 442
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	3 cut(s)	176, 203, 471
MboI	GATC	3 cut(s)	174, 201, 469
MboII	GAAGA	3 cut(s)	22, 25, 599
MfeI	CAATTG	3 cut(s)	315, 393, 465
MhlI	GDGCHC	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	538
MluCI	AATT	4 cut(s)	315, 393, 465, 603
MluNI	TGGCCA	1 cut(s)	538
MnlI	CCTC	7 cut(s)	46, 49, 55, 152, 157, 176, 595
Mox20I	TGGCCA	1 cut(s)	538
Mph1103I	ATGCAT	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	538
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	538
MspI	CCGG	2 cut(s)	223, 233
MspR9I	CCNGG	3 cut(s)	233, 535, 612
MunI	CAATTG	3 cut(s)	315, 393, 465
Mva1269I	GAATGC	1 cut(s)	339
MvaI	CCWGG	2 cut(s)	535, 612
MwoI	GCNNNNNNNGC	4 cut(s)	24, 311, 326, 625
NciI	CCSGG	1 cut(s)	233
NcoI	CCATGG	1 cut(s)	563
NdeII	GATC	3 cut(s)	174, 201, 469
NlaIII	CATG	5 cut(s)	429, 456, 506, 567, 626
NlaIV	GGNNCC	2 cut(s)	231, 532
NmuCI	GTSAC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	456
OliI	CACNNNNGTG	1 cut(s)	395
PciSI	GCTCTTC	1 cut(s)	8
PctI	GAATGC	1 cut(s)	339
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	2 cut(s)	218, 406
PpuMI	RGGWCCY	2 cut(s)	163, 229
Psp5II	RGGWCCY	2 cut(s)	163, 229
Psp6I	CCWGG	2 cut(s)	533, 610
PspFI	CCCAGC	2 cut(s)	274, 287
PspGI	CCWGG	2 cut(s)	533, 610
PspN4I	GGNNCC	2 cut(s)	231, 532
PspPI	GGNCC	5 cut(s)	73, 163, 180, 229, 531
PspPPI	RGGWCCY	2 cut(s)	163, 229
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	2 cut(s)	349, 410
RsaI	GTAC	3 cut(s)	457, 543, 573
RsaNI	GTAC	3 cut(s)	456, 542, 572
RseI	CAYNNNNRTG	1 cut(s)	395
SapI	GCTCTTC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	217, 405
Sau3AI	GATC	3 cut(s)	174, 201, 469
Sau96I	GGNCC	5 cut(s)	73, 163, 180, 229, 531
ScrFI	CCNGG	3 cut(s)	233, 535, 612
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	230
SfcI	CTRYAG	3 cut(s)	258, 402, 474
SinI	GGWCC	3 cut(s)	73, 163, 229
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	4 cut(s)	315, 393, 465, 603
SsiI	CCGC	1 cut(s)	217
StyD4I	CCNGG	3 cut(s)	231, 533, 610
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	3 cut(s)	199, 387, 582
TaiI	ACGT	2 cut(s)	268, 445
TasI	AATT	4 cut(s)	315, 393, 465, 603
TatI	WGTACW	1 cut(s)	455
TauI	GCSGC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	2 cut(s)	72, 390
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	4 cut(s)	17, 124, 411, 611
TspRI	CASTG	2 cut(s)	72, 390
Van91I	CCANNNNNTGG	1 cut(s)	366
VpaK11BI	GGWCC	3 cut(s)	73, 163, 229
XceI	RCATGY	1 cut(s)	456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	493
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.