Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0007942

Physical Location & Seq

Genomic Coordinates Reverse (-)

21780335 .. 21783492

Gene Structure 3158 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g28300.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAAGCAGAAGAAGAACAAGATGGGCGCCAGAGCCTCCTCAATCTCAGTATCAGCATCAGAGGCGCTGCTGGTCCACCTGACCATCGGCTTAGGATTAGCTCTCTGTTTCTCGGTGGCCAATAATGTCCATTTCATCAACCTCACCTCCCATCCTTCTCACGTCCTCGGTCTGATCTGGGCCTTTCAATGCCCAACCGTGATCCTTCTTTACAGCCGCTACCGGAAAGACCAAGAACGATGCTCCTACTGGAAAGCCGTGGGACGTGGCCTGCTGGGACTGCCTGCTGGGGCTGTGGTAAATGCATTAGGAGCAATTGCGTTGGGAGCACCTGTTGGCATCCAGTATCTGCCAAAGACCATTAACTGGTCTCTTATGATGTCACTGTTCACAATTGTACCTGCAGCTTCTGTTTTTGGTTCTTCATGGACAGATTGGCAACGTATATTTGCATGCCAAATGATCCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000234 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006497 GO:0006505 GO:0006506 GO:0006629 GO:0006643 GO:0006644 GO:0006650 GO:0006661 GO:0006664 GO:0006665 GO:0006666 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008610 GO:0008654 GO:0008757 GO:0009058 GO:0009059 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016491 GO:0016651 GO:0016740 GO:0016741 GO:0019538 GO:0019637 GO:0031984 GO:0032259 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0042175 GO:0042180 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045017 GO:0046467 GO:0046474 GO:0046486 GO:0046488 GO:0046519 GO:0055114 GO:0071704 GO:0090407 GO:0097164 GO:0098827 GO:1901135 GO:1901137 GO:1901564 GO:1901566 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 ko03040 map00563 map01100 map03040

Pfam Domains

Protein Families

PIG-F

Protein Analysis

157

Amino Acids

16.96

Weight (kDa)

9.84

Isoelectric Point (pI)

28.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-F	PF06699	43 - 157	1.5e-17	GPI biosynthesis protein family Pig-F

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007942)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16040 AT1G16040 AT1G16040 AT1G16040
fragaria_vesca	FvH4_6g28300 FvH4_6g28300 FvH4_6g28300
malus_domestica	MD12G1013200.v1.1 MD14G1138800.v1.1
prunus_persica	Prupe.3G103300_v2.0.a1
pyrus_communis	pycom12g01050
rosa_chinensis	RchiOBHm_Chr2g0132361
rosa_laevigata	RLG00000019249
rosa_multiflora	Rmu_sc0000781.1_g000005 Rmu_sc0002795.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112120
rosa_rugosa	Rorug02G0303900 Rorug02G0304000 Rorug02G0304100
rosa_samantha	Rh2AG357000 Rh2BG363500 Rh2CG340500 Rh2DG380200
rosa_wichuraiana	Rw2G029030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	409
AccB1I	GGYRCC	1 cut(s)	26
AccB7I	CCANNNNNTGG	1 cut(s)	366
AciI	CCGC	1 cut(s)	217
AclWI	GGATC	2 cut(s)	196, 457
AcoI	YGGCCR	1 cut(s)	117
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	1 cut(s)	188
AjiI	CACGTC	2 cut(s)	163, 266
AluBI	AGCT	2 cut(s)	101, 407
AluI	AGCT	2 cut(s)	101, 407
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	375
AlwI	GGATC	2 cut(s)	196, 457
AlwNI	CAGNNNCTG	2 cut(s)	349, 410
AoxI	GGCC	3 cut(s)	117, 180, 268
ApeKI	GCWGC	2 cut(s)	67, 404
AspLEI	GCGC	2 cut(s)	29, 67
AspS9I	GGNCC	2 cut(s)	73, 180
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	73
BaeI	ACNNNNGTAYC	2 cut(s)	381, 414
BalI	TGGCCA	1 cut(s)	119
BanI	GGYRCC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	331
BbvI	GCAGC	2 cut(s)	54, 416
BccI	CCATC	3 cut(s)	16, 92, 159
BceAI	ACGGC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	375
BfmI	CTRYAG	2 cut(s)	402, 467
BfoI	RGCGCY	2 cut(s)	30, 68
BfuAI	ACCTGC	1 cut(s)	409
BisI	GCNGC	3 cut(s)	68, 217, 405
BlsI	GCNGC	3 cut(s)	69, 218, 406
Bme18I	GGWCC	1 cut(s)	73
BmgBI	CACGTC	2 cut(s)	163, 266
BmgT120I	GGNCC	2 cut(s)	73, 180
BmiI	GGNNCC	1 cut(s)	28
BmsI	GCATC	3 cut(s)	65, 230, 348
Bpu10I	CCTNAGC	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	27
BsaI	GGTCTC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	166, 258
BsaWI	WCCGGW	1 cut(s)	222
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 318, 348
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse1I	ACTGG	3 cut(s)	254, 343, 371
BseDI	CCNNGG	2 cut(s)	166, 258
BseGI	GGATG	2 cut(s)	151, 339
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	60
BseNI	ACTGG	3 cut(s)	254, 343, 371
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	54, 416
BseYI	CCCAGC	2 cut(s)	274, 287
BshFI	GGCC	3 cut(s)	119, 182, 270
BshNI	GGYRCC	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	331
BsiSI	CCGG	1 cut(s)	223
BslFI	GGGAC	2 cut(s)	276, 291
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmAI	GTCTC	1 cut(s)	375
BsmFI	GGGAC	2 cut(s)	276, 291
BsnI	GGCC	3 cut(s)	119, 182, 270
Bso31I	GGTCTC	1 cut(s)	375
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp143I	GATC	3 cut(s)	174, 201, 462
BspACI	CCGC	1 cut(s)	217
BspANI	GGCC	3 cut(s)	119, 182, 270
BspCNI	CTCAG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	28
BspMAI	CTGCAG	1 cut(s)	406
BspMI	ACCTGC	1 cut(s)	409
BspPI	GGATC	2 cut(s)	196, 457
BspT107I	GGYRCC	1 cut(s)	26
BspTNI	GGTCTC	1 cut(s)	375
BsrI	ACTGG	3 cut(s)	254, 343, 371
BssECI	CCNNGG	2 cut(s)	166, 258
BssMI	GATC	3 cut(s)	174, 201, 462
BssNI	GRCGYC	1 cut(s)	27
Bst4CI	ACNGT	2 cut(s)	199, 387
BstACI	GRCGYC	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	272, 285, 454
BstDEI	CTNAG	2 cut(s)	46, 91
BstDSI	CCRYGG	1 cut(s)	258
BstF5I	GGATG	2 cut(s)	151, 339
BstH2I	RGCGCY	2 cut(s)	30, 68
BstHHI	GCGC	2 cut(s)	29, 67
BstKTI	GATC	3 cut(s)	177, 204, 465
BstMAI	GTCTC	1 cut(s)	375
BstMBI	GATC	3 cut(s)	174, 201, 462
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 280, 311, 326
BstNSI	RCATGY	1 cut(s)	456
BstSFI	CTRYAG	2 cut(s)	402, 467
BstV1I	GCAGC	2 cut(s)	54, 416
BsuRI	GGCC	3 cut(s)	119, 182, 270
BtgI	CCRYGG	1 cut(s)	258
BtrI	CACGTC	2 cut(s)	163, 266
BtsCI	GGATG	2 cut(s)	151, 339
BtsIMutI	CAGTG	1 cut(s)	383
BveI	ACCTGC	1 cut(s)	409
Cac8I	GCNNGC	3 cut(s)	272, 285, 454
CaiI	CAGNNNCTG	2 cut(s)	349, 410
CfoI	GCGC	2 cut(s)	29, 67
Cfr13I	GGNCC	2 cut(s)	73, 180
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	2 cut(s)	426, 453
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	2 cut(s)	46, 91
DinI	GGCGCC	1 cut(s)	28
DpnI	GATC	3 cut(s)	176, 203, 464
DpnII	GATC	3 cut(s)	174, 201, 462
EaeI	YGGCCR	1 cut(s)	117
Eco31I	GGTCTC	1 cut(s)	375
Eco47I	GGWCC	1 cut(s)	73
EcoT22I	ATGCAT	1 cut(s)	307
EgeI	GGCGCC	1 cut(s)	28
EheI	GGCGCC	1 cut(s)	28
FaeI	CATG	2 cut(s)	429, 456
FaiI	YATR	4 cut(s)	377, 427, 446, 454
FaqI	GGGAC	2 cut(s)	276, 291
FatI	CATG	2 cut(s)	425, 452
Fnu4HI	GCNGC	3 cut(s)	68, 217, 405
FokI	GGATG	2 cut(s)	138, 326
Fsp4HI	GCNGC	3 cut(s)	68, 217, 405
GlaI	GCGC	2 cut(s)	28, 66
GluI	GCNGC	3 cut(s)	68, 217, 405
GsaI	CCCAGC	2 cut(s)	278, 291
HaeII	RGCGCY	2 cut(s)	30, 68
HaeIII	GGCC	3 cut(s)	119, 182, 270
HapII	CCGG	1 cut(s)	223
HhaI	GCGC	2 cut(s)	29, 67
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	2 cut(s)	429, 456
Hin6I	GCGC	2 cut(s)	27, 65
HinP1I	GCGC	2 cut(s)	27, 65
HpaII	CCGG	1 cut(s)	223
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	76, 390
Hpy188I	TCNGA	2 cut(s)	61, 174
Hpy8I	GTNNAC	2 cut(s)	76, 390
HpyAV	CCTTC	2 cut(s)	165, 215
HpyCH4III	ACNGT	2 cut(s)	199, 387
HpyCH4IV	ACGT	3 cut(s)	162, 265, 442
HpyCH4V	TGCA	3 cut(s)	305, 404, 452
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 280, 311, 326
HpyF3I	CTNAG	2 cut(s)	46, 91
HpySE526I	ACGT	3 cut(s)	162, 265, 442
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	429, 456
HspAI	GCGC	2 cut(s)	27, 65
KasI	GGCGCC	1 cut(s)	26
Kzo9I	GATC	3 cut(s)	174, 201, 462
LmnI	GCTCC	3 cut(s)	248, 311, 326
Lsp1109I	GCAGC	2 cut(s)	54, 416
LweI	GCATC	3 cut(s)	65, 230, 348
MaeII	ACGT	3 cut(s)	162, 265, 442
MaeIII	GTNAC	1 cut(s)	381
MalI	GATC	3 cut(s)	176, 203, 464
MboI	GATC	3 cut(s)	174, 201, 462
MboII	GAAGA	3 cut(s)	22, 25, 414
MfeI	CAATTG	2 cut(s)	315, 393
MhlI	GDGCHC	1 cut(s)	331
MlsI	TGGCCA	1 cut(s)	119
MluCI	AATT	2 cut(s)	315, 393
MluNI	TGGCCA	1 cut(s)	119
Mly113I	GGCGCC	1 cut(s)	27
MnlI	CCTC	6 cut(s)	46, 49, 55, 152, 157, 176
Mox20I	TGGCCA	1 cut(s)	119
Mph1103I	ATGCAT	1 cut(s)	307
MscI	TGGCCA	1 cut(s)	119
MseI	TTAA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	119
MspI	CCGG	1 cut(s)	223
MunI	CAATTG	2 cut(s)	315, 393
MwoI	GCNNNNNNNGC	4 cut(s)	62, 280, 311, 326
NarI	GGCGCC	1 cut(s)	27
NdeII	GATC	3 cut(s)	174, 201, 462
NlaIII	CATG	2 cut(s)	429, 456
NlaIV	GGNNCC	1 cut(s)	28
NmuCI	GTSAC	1 cut(s)	381
NsiI	ATGCAT	1 cut(s)	307
NspI	RCATGY	1 cut(s)	456
PaeI	GCATGC	1 cut(s)	456
PflMI	CCANNNNNTGG	1 cut(s)	366
PkrI	GCNGC	3 cut(s)	69, 218, 406
PluTI	GGCGCC	1 cut(s)	30
PspFI	CCCAGC	2 cut(s)	274, 287
PspN4I	GGNNCC	1 cut(s)	28
PspPI	GGNCC	2 cut(s)	73, 180
PstI	CTGCAG	1 cut(s)	406
PstNI	CAGNNNCTG	2 cut(s)	349, 410
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	3 cut(s)	68, 217, 405
Sau3AI	GATC	3 cut(s)	174, 201, 462
Sau96I	GGNCC	2 cut(s)	73, 180
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	3 cut(s)	65, 230, 348
SfcI	CTRYAG	2 cut(s)	402, 467
SfoI	GGCGCC	1 cut(s)	28
SinI	GGWCC	1 cut(s)	73
SphI	GCATGC	1 cut(s)	456
Sse9I	AATT	2 cut(s)	315, 393
SsiI	CCGC	1 cut(s)	217
SspDI	GGCGCC	1 cut(s)	26
TaaI	ACNGT	2 cut(s)	199, 387
TaiI	ACGT	3 cut(s)	165, 268, 445
TaqII	GACCGA	1 cut(s)	158
TasI	AATT	2 cut(s)	315, 393
TauI	GCSGC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	381
TseI	GCWGC	2 cut(s)	67, 404
Tsp45I	GTSAC	1 cut(s)	381
TspDTI	ATGAA	3 cut(s)	17, 124, 414
TspRI	CASTG	1 cut(s)	390
Van91I	CCANNNNNTGG	1 cut(s)	366
VpaK11BI	GGWCC	1 cut(s)	73
XceI	RCATGY	1 cut(s)	456
Zsp2I	ATGCAT	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.