AT1G16070

Belongs to the TUB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007280
Physical Location & Seq
Reverse (-)
5510301 .. 5513980
3680 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16070.1

Sequence Viewer

Length: 1194 bp
ATGGCTGGTTCGAGAAAAGTGAATGATTTGTTGGAGGAAAATAAGGGAAATGTGGACACAATTACAGGGTCTTTATCCACTCAAAAGGGAGAGGATAAGGAGAATGTGTCGCCGGAGAAAGTCTCTACCTCTGTGGAAACTCGGAAACTAGATCGAGCTTTGAAGTCTCAATCGATGAAGGGTAACTCTGGGTTTCCAACGGAAGTTACAAATTTCAAATCTTTCTCAACTGGTGGTCGAACAGCTCTGAAGCAGTCATCACTGCAAGCGTGTATGCAGAAGAACAGTGAGGTTGATAAGAGTAGTTTCGGAATGAAAACTTGGACTAGTGTTGATTCAGAGCATTCAAGTTCGTTGAAAGTGTGGGAGTTTTCGGATTCTGAAGCTGCCCCTGCTTCCTCTTGGTCTACTTTGCCCAACAGGGCTTTGTTGTGCAAGACACTACCTTTGGATGTGGGAAGATGCACTTGTCTGATTGTGAAAGAACAATCACCTGAAGGCTTGAGCCACGGATCTGTATATTCACTTTATACACATGAAGGTCGGGGGCGTAAAGACCGGAAGTTAGCAGTTGCTTACCATAGCCGACGTAATGGGAAATCTATATTTAGGGTGGCACAGAATGTTAAGGGATTGCTGTGCAGTTCGGATGAAAGTTATGTCGGTTCCATGACGGCTAATCTCTTGGGTTCCAAGTACTACATATGGGACAAGGGAGTTCGAGTTGGTTCTGTAGGTAAAATGGTGAAGCCGCTTCTTTCGGTTGTAATATTCACACCCACCATAACAACTTGGACAGGGAGCTACAGAAGAATGAGAACTTTGCTACCAAAGCAGCAGCCAATGCAGAAAAACAACAATAAGCAGGTTCAACAAGCTAGTAAACTACCGCTTGATTGGCTTGAGAATAAGGAAAAAATTCAGAAGCTATGCTCAAGGATACCACATTACAACAAAATCTCCAAGCAGCATGAGTTAGACTTCAGAGACAGAGGAAGAACAGGACTGAGAATACAGAGCTCGGTGAAGAACTTTCAGCTAACACTCACGGAGACTCCAAGGCAGACAATTCTTCAAATGGGGAGAGTTGACAAAGCAAGATATGTAATCGACTTCAGGTATCCATTCTCAGGCTACCAAGCATTCTGCATTTGCTTGGCTTCTATTGATTCCAAGCTTTGTTGTACTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tub

Protein Analysis

397

Amino Acids

44.49

Weight (kDa)

9.69

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 146 - 391 2.8e-45 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 856
AccI GTMKAC 1 cut(s) 407
AciI CCGC 2 cut(s) 752, 890
AclWI GGATC 1 cut(s) 520
AcsI RAATTY 2 cut(s) 211, 918
AcuI CTGAAG 5 cut(s) 269, 402, 516, 967, 1099
AfaI GTAC 2 cut(s) 698, 1186
AfiI CCNNNNNNNGG 1 cut(s) 1130
AgsI TTSAA 6 cut(s) 163, 217, 348, 358, 872, 1076
AhlI ACTAGT 1 cut(s) 326
AjuI GAANNNNNNNTTGG 4 cut(s) 14, 46, 304, 336
AluBI AGCT 9 cut(s) 158, 245, 386, 804, 878, 928, 1020, 1039, 1177
AluI AGCT 9 cut(s) 158, 245, 386, 804, 878, 928, 1020, 1039, 1177
Alw21I GWGCWC 1 cut(s) 1022
Alw26I GTCTC 4 cut(s) 127, 171, 981, 1046
AlwI GGATC 1 cut(s) 520
ApeKI GCWGC 4 cut(s) 386, 835, 838, 967
ApoI RAATTY 2 cut(s) 211, 918
ArsI GACNNNNNNTTYG 2 cut(s) 430, 462
Asp700I GAANNNNTTC 1 cut(s) 918
AsuHPI GGTGA 3 cut(s) 483, 757, 1036
BanII GRGCYC 1 cut(s) 1022
Bbv12I GWGCWC 1 cut(s) 1022
BbvI GCAGC 4 cut(s) 373, 847, 850, 979
BceAI ACGGC 1 cut(s) 690
BciVI GTATCC 2 cut(s) 933, 1131
BcoDI GTCTC 4 cut(s) 127, 171, 981, 1046
BcuI ACTAGT 1 cut(s) 326
BfaI CTAG 3 cut(s) 149, 327, 879
BfmI CTRYAG 2 cut(s) 732, 805
BfuAI ACCTGC 1 cut(s) 856
BfuI GTATCC 2 cut(s) 933, 1131
BisI GCNGC 5 cut(s) 387, 752, 836, 839, 968
BlsI GCNGC 5 cut(s) 388, 753, 837, 840, 969
BmcAI AGTACT 1 cut(s) 698
BmiI GGNNCC 2 cut(s) 667, 691
BmsI GCATC 1 cut(s) 452
BplI GAGNNNNNCTC 2 cut(s) 107, 139
BpuEI CTTGAG 3 cut(s) 523, 919, 923
Bsa29I ATCGAT 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 508, 1058
BsaWI WCCGGW 1 cut(s) 558
BsaXI ACNNNNNCTCC 8 cut(s) 92, 122, 708, 738, 944, 974, 1039, 1069
Bsc4I CCNNNNNNNGG 1 cut(s) 1130
Bse1I ACTGG 1 cut(s) 235
BseCI ATCGAT 1 cut(s) 173
BseDI CCNNGG 2 cut(s) 508, 1058
BseGI GGATG 2 cut(s) 457, 655
BseLI CCNNNNNNNGG 1 cut(s) 1130
BseMII CTCAG 2 cut(s) 998, 1143
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 4 cut(s) 373, 847, 850, 979
BsgI GTGCAG 1 cut(s) 661
BshVI ATCGAT 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 1022
BsiSI CCGG 2 cut(s) 113, 559
BslFI GGGAC 1 cut(s) 722
BslI CCNNNNNNNGG 1 cut(s) 1130
BsmAI GTCTC 4 cut(s) 127, 171, 981, 1046
BsmFI GGGAC 1 cut(s) 722
BsmI GAATGC 2 cut(s) 343, 1142
Bsp1286I GDGCHC 1 cut(s) 1022
Bsp143I GATC 2 cut(s) 151, 512
BspACI CCGC 2 cut(s) 752, 890
BspCNI CTCAG 2 cut(s) 999, 1142
BspDI ATCGAT 1 cut(s) 173
BspLI GGNNCC 2 cut(s) 667, 691
BspMI ACCTGC 1 cut(s) 856
BspPI GGATC 1 cut(s) 520
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 508, 1058
BssMI GATC 2 cut(s) 151, 512
BssT1I CCWWGG 1 cut(s) 1058
Bst4CI ACNGT 2 cut(s) 287, 1189
BstAPI GCANNNNNTGC 1 cut(s) 844
BstC8I GCNNGC 1 cut(s) 267
BstDEI CTNAG 2 cut(s) 1007, 1129
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 2 cut(s) 457, 655
BstKTI GATC 2 cut(s) 154, 515
BstMAI GTCTC 4 cut(s) 127, 171, 981, 1046
BstMBI GATC 2 cut(s) 151, 512
BstMWI GCNNNNNNNGC 4 cut(s) 392, 832, 844, 898
BstSFI CTRYAG 2 cut(s) 732, 805
BstV1I GCAGC 4 cut(s) 373, 847, 850, 979
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
Bsu15I ATCGAT 1 cut(s) 173
BsuI GTATCC 2 cut(s) 933, 1131
BsuTUI ATCGAT 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 2 cut(s) 457, 655
BtsI GCAGTG 1 cut(s) 260
BtsIMutI CAGTG 2 cut(s) 260, 292
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 1 cut(s) 267
ClaI ATCGAT 1 cut(s) 173
Csp6I GTAC 2 cut(s) 697, 1185
CviAII CATG 3 cut(s) 536, 670, 971
CviQI GTAC 2 cut(s) 697, 1185
DdeI CTNAG 2 cut(s) 1007, 1129
DpnI GATC 2 cut(s) 153, 514
DpnII GATC 2 cut(s) 151, 512
Ecl136II GAGCTC 1 cut(s) 1020
Eco130I CCWWGG 1 cut(s) 1058
Eco24I GRGCYC 1 cut(s) 1022
Eco53kI GAGCTC 1 cut(s) 1020
Eco57I CTGAAG 5 cut(s) 269, 402, 516, 967, 1099
EcoICRI GAGCTC 1 cut(s) 1020
EcoT14I CCWWGG 1 cut(s) 1058
EcoT38I GRGCYC 1 cut(s) 1022
ErhI CCWWGG 1 cut(s) 1058
FaeI CATG 3 cut(s) 539, 673, 974
FalI AAGNNNNNCTT 2 cut(s) 451, 483
FaqI GGGAC 1 cut(s) 722
FatI CATG 3 cut(s) 535, 669, 970
FauNDI CATATG 1 cut(s) 704
FblI GTMKAC 1 cut(s) 407
Fnu4HI GCNGC 5 cut(s) 387, 752, 836, 839, 968
FokI GGATG 2 cut(s) 464, 662
FriOI GRGCYC 1 cut(s) 1022
Fsp4HI GCNGC 5 cut(s) 387, 752, 836, 839, 968
FspBI CTAG 3 cut(s) 149, 327, 879
GluI GCNGC 5 cut(s) 387, 752, 836, 839, 968
HapII CCGG 2 cut(s) 113, 559
Hin1II CATG 3 cut(s) 539, 673, 974
HincII GTYRAC 1 cut(s) 1090
HindII GTYRAC 1 cut(s) 1090
HindIII AAGCTT 1 cut(s) 1175
HinfI GANTC 4 cut(s) 335, 377, 1054, 1169
HpaII CCGG 2 cut(s) 113, 559
HphI GGTGA 3 cut(s) 483, 757, 1036
Hpy166II GTNNAC 4 cut(s) 55, 408, 884, 1090
Hpy188III TCNNGA 1 cut(s) 12
Hpy8I GTNNAC 4 cut(s) 55, 408, 884, 1090
Hpy99I CGWCG 1 cut(s) 591
HpyAV CCTTC 3 cut(s) 172, 491, 533
HpyCH4III ACNGT 2 cut(s) 287, 1189
HpyCH4IV ACGT 1 cut(s) 589
HpyCH4V TGCA 7 cut(s) 265, 277, 435, 465, 642, 847, 1149
HpyF10VI GCNNNNNNNGC 4 cut(s) 392, 832, 844, 898
HpyF3I CTNAG 2 cut(s) 1007, 1129
HpySE526I ACGT 1 cut(s) 589
Hsp92II CATG 3 cut(s) 539, 673, 974
Kzo9I GATC 2 cut(s) 151, 512
LmnI GCTCC 1 cut(s) 801
Lsp1109I GCAGC 4 cut(s) 373, 847, 850, 979
LweI GCATC 1 cut(s) 452
MaeI CTAG 3 cut(s) 149, 327, 879
MaeII ACGT 1 cut(s) 589
MaeIII GTNAC 2 cut(s) 182, 205
MalI GATC 2 cut(s) 153, 514
MboI GATC 2 cut(s) 151, 512
MboII GAAGA 6 cut(s) 292, 471, 822, 1008, 1039, 1064
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 1 cut(s) 1022
MluCI AATT 4 cut(s) 60, 211, 918, 1068
MlyI GAGTC 1 cut(s) 1048
MmeI TCCRAC 2 cut(s) 12, 221
MnlI CCTC 6 cut(s) 28, 85, 139, 283, 409, 986
MroXI GAANNNNTTC 1 cut(s) 918
MseI TTAA 1 cut(s) 627
MspI CCGG 2 cut(s) 113, 559
Mva1269I GAATGC 2 cut(s) 343, 1142
MwoI GCNNNNNNNGC 4 cut(s) 392, 832, 844, 898
NdeI CATATG 1 cut(s) 704
NdeII GATC 2 cut(s) 151, 512
NlaIII CATG 3 cut(s) 539, 673, 974
NlaIV GGNNCC 2 cut(s) 667, 691
PctI GAATGC 2 cut(s) 343, 1142
PdmI GAANNNNTTC 1 cut(s) 918
PfeI GAWTC 3 cut(s) 335, 377, 1169
PkrI GCNGC 5 cut(s) 388, 753, 837, 840, 969
PleI GAGTC 1 cut(s) 1048
PpsI GAGTC 1 cut(s) 1048
Psp124BI GAGCTC 1 cut(s) 1022
PspN4I GGNNCC 2 cut(s) 667, 691
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 2 cut(s) 698, 1186
RsaNI GTAC 2 cut(s) 697, 1185
SacI GAGCTC 1 cut(s) 1022
SaqAI TTAA 1 cut(s) 627
SatI GCNGC 5 cut(s) 387, 752, 836, 839, 968
Sau3AI GATC 2 cut(s) 151, 512
ScaI AGTACT 1 cut(s) 698
SchI GAGTC 1 cut(s) 1048
SduI GDGCHC 1 cut(s) 1022
SfaNI GCATC 1 cut(s) 452
SfcI CTRYAG 2 cut(s) 732, 805
SmlI CTYRAG 3 cut(s) 502, 902, 934
SmoI CTYRAG 3 cut(s) 502, 902, 934
SpeI ACTAGT 1 cut(s) 326
Sse9I AATT 4 cut(s) 60, 211, 918, 1068
SsiI CCGC 2 cut(s) 752, 890
SspI AATATT 1 cut(s) 771
SspMI CTAG 3 cut(s) 149, 327, 879
SstI GAGCTC 1 cut(s) 1022
StyI CCWWGG 1 cut(s) 1058
TaaI ACNGT 2 cut(s) 287, 1189
TaiI ACGT 1 cut(s) 592
TaqI TCGA 6 cut(s) 11, 154, 173, 238, 721, 1110
TasI AATT 4 cut(s) 60, 211, 918, 1068
TatI WGTACW 2 cut(s) 696, 1184
TauI GCSGC 1 cut(s) 754
TfiI GAWTC 3 cut(s) 335, 377, 1169
Tru1I TTAA 1 cut(s) 627
Tru9I TTAA 1 cut(s) 627
TscAI CASTG 2 cut(s) 267, 292
TseI GCWGC 4 cut(s) 386, 835, 838, 967
TspDTI ATGAA 4 cut(s) 191, 329, 552, 666
TspGWI ACGGA 3 cut(s) 215, 525, 1064
TspRI CASTG 2 cut(s) 267, 292
XapI RAATTY 2 cut(s) 211, 918
XmiI GTMKAC 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 918
XspI CTAG 3 cut(s) 149, 327, 879
ZrmI AGTACT 1 cut(s) 698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.