Rw2G028930

Belongs to the TUB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0007280
Physical Location & Seq
Forward (+)
46465085 .. 46468371
3287 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028930.1

Sequence Viewer

Length: 1230 bp
ATGATGAGTGGTTGCAAGAGAACGGCACTAATGCCACGGCAATCGTCGTACAATTCCCTCTACGTCAACCCCCTCAACGACCCAAAACACAACCGCAGTTCCAGCGAAGGCGACGATCATTCCAAACCAAACCAGTTGGCTTTGGCTTCGAACGACGAAGACAAAGAGAACGCAACGCCCAACAGCAACAGCAGCGACAAGGAGAACTTGCTGGCGAAGAAGCCAGTGAAGCAGAATCAACTGAACAAGTCTTTCTCCACCGGCTGCGGCGGCGGTGGTGGGGCCTTGAAGCCCTCGTCGCTTCAGTTCTGTATGCAGATGAGTGAGCCGGAGAAGGAGCTCTTTGGTGGGTCCAAGATGTGGGACCAGCCCAGTGTGACGTCGGACAACTCTAGTTCTCTGAAGATATGGGACTACTCGGATTCTGAGGCTGCTCCTGCTTCTTCTTGGTCCACTCTGCCCAATAAGTCTTTGCTGTGTAGGCCGTTACCTATGGATGTAGGAAGGTGCACTTGTGTTATAGTGAAGGAAAAATCTCCAGATGGGGGCTCTCTGTATTCTCTCTATACCAATGAAGGCAAGGGAAGGCAGGACAGGAAACTAGCTGTTGCACACCATAAGCGGCGTAATGGAAAGTCTGAGTTAACTATTGCTCAAAATATGAAGGGAATATTGTCACATTCAGATGATAGTTTTATTGGGATGGTAACTGCTAATCTCATGGGTTCAAAGTACCACATATGGGATCAGGGGAAGCAACCAAATTGCTTGAGTAAACAGTCTAAATCACTTCTTGCTGCTGTATTATTCACACCCACAATTTCAACTTGGACAGGAAGTTACAGACGTATAAGGGCATATGTACCCAAGCACCAATCGATGCAGTTGAAGAATACTGCTCAGGTACAACACATTAAGGGACTGCCAACAGACTGGGAGGGGAAAATGGACAAAATCCATCAGCTATACTCAAGGGTTCCACTTTACAATAAAATTTCAAAGCAATACGAGTTGGACTTCAGAGATAGGGGAAGAGCTGGACTTAGAATCCAAAGTTCAGTTAAAAATTTCCAGCTAACTCTGGAGGAGAACGGAAAGCAGACAATCCTGCAGCTAGGAAGGGTTGGGAAGTCAAAATATGTGATGGATTACAGATATCCTTTGACAGGCTACCAAGCATTTTGCATTTGTCTGGCTTCTATTGATTCAAAGCTCTGTTGCTCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tub

Protein Analysis

409

Amino Acids

45.56

Weight (kDa)

9.39

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 159 - 403 6e-49 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 383
AccB7I CCANNNNNTGG 1 cut(s) 360
AciI CCGC 5 cut(s) 94, 267, 270, 273, 622
AclWI GGATC 1 cut(s) 753
AcsI RAATTY 2 cut(s) 993, 1066
AcuI CTGAAG 3 cut(s) 287, 422, 1003
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 4 cut(s) 50, 734, 864, 906
AfiI CCNNNNNNNGG 4 cut(s) 360, 545, 742, 1166
AgsI TTSAA 6 cut(s) 289, 729, 825, 889, 999, 1209
AluBI AGCT 7 cut(s) 340, 605, 964, 1037, 1075, 1114, 1213
AluI AGCT 7 cut(s) 340, 605, 964, 1037, 1075, 1114, 1213
Alw21I GWGCWC 2 cut(s) 342, 512
Alw44I GTGCAC 1 cut(s) 508
AlwI GGATC 1 cut(s) 753
AoxI GGCC 2 cut(s) 282, 482
ApaLI GTGCAC 1 cut(s) 508
ApeKI GCWGC 5 cut(s) 192, 264, 431, 797, 1111
ApoI RAATTY 2 cut(s) 993, 1066
AspS9I GGNCC 4 cut(s) 282, 351, 364, 450
AsuII TTCGAA 1 cut(s) 149
AvaII GGWCC 3 cut(s) 351, 364, 450
BaeGI GKGCMC 1 cut(s) 512
BanII GRGCYC 2 cut(s) 342, 551
BbsI GAAGAC 1 cut(s) 165
Bbv12I GWGCWC 2 cut(s) 342, 512
BbvI GCAGC 5 cut(s) 204, 251, 418, 784, 1123
BccI CCATC 4 cut(s) 536, 697, 966, 1138
BceAI ACGGC 3 cut(s) 39, 53, 469
BfaI CTAG 3 cut(s) 393, 602, 1115
BfmI CTRYAG 1 cut(s) 1109
BisI GCNGC 8 cut(s) 193, 265, 268, 271, 432, 623, 798, 1112
BlsI GCNGC 8 cut(s) 194, 266, 269, 272, 433, 624, 799, 1113
Bme18I GGWCC 3 cut(s) 351, 364, 450
BmgT120I GGNCC 4 cut(s) 282, 351, 364, 450
BmiI GGNNCC 4 cut(s) 283, 352, 365, 978
BmrI ACTGGG 2 cut(s) 366, 943
BmsI GCATC 1 cut(s) 870
BmuI ACTGGG 2 cut(s) 366, 943
BpiI GAAGAC 1 cut(s) 165
BpmI CTGGAG 2 cut(s) 522, 1103
Bpu10I CCTNAGC 1 cut(s) 900
Bpu14I TTCGAA 1 cut(s) 149
BpuEI CTTGAG 2 cut(s) 790, 955
Bsa29I ATCGAT 1 cut(s) 878
BsaHI GRCGYC 1 cut(s) 380
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 4 cut(s) 360, 545, 742, 1166
Bse118I RCCGGY 1 cut(s) 260
Bse1I ACTGG 4 cut(s) 133, 224, 372, 938
BseCI ATCGAT 1 cut(s) 878
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 2 cut(s) 502, 708
BseLI CCNNNNNNNGG 4 cut(s) 360, 545, 742, 1166
BseMII CTCAG 3 cut(s) 417, 630, 914
BseNI ACTGG 4 cut(s) 133, 224, 372, 938
BseRI GAGGAG 1 cut(s) 1100
BseSI GKGCMC 1 cut(s) 512
BseXI GCAGC 5 cut(s) 204, 251, 418, 784, 1123
BshFI GGCC 2 cut(s) 284, 484
BshVI ATCGAT 1 cut(s) 878
BsiHKAI GWGCWC 2 cut(s) 342, 512
BsiSI CCGG 2 cut(s) 261, 329
BslFI GGGAC 3 cut(s) 377, 425, 933
BslI CCNNNNNNNGG 4 cut(s) 360, 545, 742, 1166
BsmFI GGGAC 3 cut(s) 377, 425, 933
BsnI GGCC 2 cut(s) 284, 484
Bsp119I TTCGAA 1 cut(s) 149
Bsp1286I GDGCHC 3 cut(s) 342, 512, 551
Bsp143I GATC 2 cut(s) 115, 745
BspACI CCGC 5 cut(s) 94, 267, 270, 273, 622
BspANI GGCC 2 cut(s) 284, 484
BspCNI CTCAG 3 cut(s) 418, 631, 913
BspDI ATCGAT 1 cut(s) 878
BspLI GGNNCC 4 cut(s) 283, 352, 365, 978
BspMAI CTGCAG 1 cut(s) 1113
BspPI GGATC 1 cut(s) 753
BspQI GCTCTTC 1 cut(s) 1027
BspT104I TTCGAA 1 cut(s) 149
BsrFI RCCGGY 1 cut(s) 260
BsrI ACTGG 4 cut(s) 133, 224, 372, 938
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 2 cut(s) 115, 745
BssNI GRCGYC 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 780
Bst6I CTCTTC 1 cut(s) 1027
BstACI GRCGYC 1 cut(s) 380
BstBI TTCGAA 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 213
BstDEI CTNAG 5 cut(s) 426, 639, 900, 1043, 1222
BstDSI CCRYGG 1 cut(s) 35
BstENI CCTNNNNNAGG 1 cut(s) 1164
BstF5I GGATG 2 cut(s) 502, 708
BstKTI GATC 2 cut(s) 118, 748
BstMBI GATC 2 cut(s) 115, 745
BstMWI GCNNNNNNNGC 7 cut(s) 102, 192, 229, 270, 298, 437, 481
BstSFI CTRYAG 1 cut(s) 1109
BstSLI GKGCMC 1 cut(s) 512
BstV1I GCAGC 5 cut(s) 204, 251, 418, 784, 1123
BstV2I GAAGAC 1 cut(s) 165
BstXI CCANNNNNNTGG 1 cut(s) 933
Bsu15I ATCGAT 1 cut(s) 878
BsuRI GGCC 2 cut(s) 284, 484
BsuTUI ATCGAT 1 cut(s) 878
BtgI CCRYGG 1 cut(s) 35
BtsCI GGATG 2 cut(s) 502, 708
BtsIMutI CAGTG 2 cut(s) 231, 379
Cac8I GCNNGC 1 cut(s) 213
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 4 cut(s) 282, 351, 364, 450
ClaI ATCGAT 1 cut(s) 878
Csp6I GTAC 4 cut(s) 49, 733, 863, 905
CviAII CATG 1 cut(s) 721
CviQI GTAC 4 cut(s) 49, 733, 863, 905
DdeI CTNAG 5 cut(s) 426, 639, 900, 1043, 1222
DpnI GATC 2 cut(s) 117, 747
DpnII GATC 2 cut(s) 115, 745
Eam1104I CTCTTC 1 cut(s) 1027
EarI CTCTTC 1 cut(s) 1027
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 2 cut(s) 342, 551
Eco32I GATATC 1 cut(s) 1157
Eco47I GGWCC 3 cut(s) 351, 364, 450
Eco53kI GAGCTC 1 cut(s) 340
Eco57I CTGAAG 3 cut(s) 287, 422, 1003
EcoICRI GAGCTC 1 cut(s) 340
EcoNI CCTNNNNNAGG 1 cut(s) 1164
EcoO109I RGGNCCY 1 cut(s) 282
EcoRV GATATC 1 cut(s) 1157
EcoT38I GRGCYC 2 cut(s) 342, 551
FaeI CATG 1 cut(s) 724
FalI AAGNNNNNCTT 6 cut(s) 191, 223, 326, 358, 496, 528
FaqI GGGAC 3 cut(s) 377, 425, 933
FatI CATG 1 cut(s) 720
FauNDI CATATG 2 cut(s) 740, 859
Fnu4HI GCNGC 8 cut(s) 193, 265, 268, 271, 432, 623, 798, 1112
FokI GGATG 2 cut(s) 509, 715
FriOI GRGCYC 2 cut(s) 342, 551
Fsp4HI GCNGC 8 cut(s) 193, 265, 268, 271, 432, 623, 798, 1112
FspBI CTAG 3 cut(s) 393, 602, 1115
GluI GCNGC 8 cut(s) 193, 265, 268, 271, 432, 623, 798, 1112
GsuI CTGGAG 2 cut(s) 522, 1103
HaeIII GGCC 2 cut(s) 284, 484
HapII CCGG 2 cut(s) 261, 329
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 1 cut(s) 724
HincII GTYRAC 2 cut(s) 67, 645
HindII GTYRAC 2 cut(s) 67, 645
HinfI GANTC 4 cut(s) 235, 422, 1047, 1205
HpaI GTTAAC 1 cut(s) 645
HpaII CCGG 2 cut(s) 261, 329
Hpy166II GTNNAC 5 cut(s) 67, 453, 510, 645, 776
Hpy188I TCNGA 7 cut(s) 385, 402, 421, 427, 640, 685, 1022
Hpy188III TCNNGA 2 cut(s) 539, 1082
Hpy8I GTNNAC 5 cut(s) 67, 453, 510, 645, 776
Hpy99I CGWCG 5 cut(s) 49, 116, 158, 301, 385
HpyAV CCTTC 8 cut(s) 101, 328, 498, 520, 569, 579, 658, 1113
HpyCH4III ACNGT 1 cut(s) 780
HpyCH4IV ACGT 3 cut(s) 63, 380, 847
HpyCH4V TGCA 7 cut(s) 15, 316, 510, 611, 883, 1111, 1185
HpyF10VI GCNNNNNNNGC 7 cut(s) 102, 192, 229, 270, 298, 437, 481
HpyF3I CTNAG 5 cut(s) 426, 639, 900, 1043, 1222
HpySE526I ACGT 3 cut(s) 63, 380, 847
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 1 cut(s) 724
KspAI GTTAAC 1 cut(s) 645
Kzo9I GATC 2 cut(s) 115, 745
LguI GCTCTTC 1 cut(s) 1027
LmnI GCTCC 2 cut(s) 337, 439
Lsp1109I GCAGC 5 cut(s) 204, 251, 418, 784, 1123
LweI GCATC 1 cut(s) 870
MaeI CTAG 3 cut(s) 393, 602, 1115
MaeII ACGT 3 cut(s) 63, 380, 847
MaeIII GTNAC 5 cut(s) 376, 486, 675, 706, 839
MalI GATC 2 cut(s) 117, 747
MboI GATC 2 cut(s) 115, 745
MboII GAAGA 6 cut(s) 170, 229, 415, 435, 901, 1044
MhlI GDGCHC 3 cut(s) 342, 512, 551
MluCI AATT 5 cut(s) 52, 763, 819, 993, 1066
MmeI TCCRAC 2 cut(s) 363, 993
MnlI CCTC 6 cut(s) 68, 83, 304, 421, 931, 1078
MseI TTAA 3 cut(s) 644, 915, 1062
MslI CAYNNNNRTG 1 cut(s) 684
MspI CCGG 2 cut(s) 261, 329
MwoI GCNNNNNNNGC 7 cut(s) 102, 192, 229, 270, 298, 437, 481
NdeI CATATG 2 cut(s) 740, 859
NdeII GATC 2 cut(s) 115, 745
NlaIII CATG 1 cut(s) 724
NlaIV GGNNCC 4 cut(s) 283, 352, 365, 978
NmuCI GTSAC 2 cut(s) 376, 675
NspV TTCGAA 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 1027
PfeI GAWTC 4 cut(s) 235, 422, 1047, 1205
PflMI CCANNNNNTGG 1 cut(s) 360
PkrI GCNGC 8 cut(s) 194, 266, 269, 272, 433, 624, 799, 1113
Psp124BI GAGCTC 1 cut(s) 342
PspN4I GGNNCC 4 cut(s) 283, 352, 365, 978
PspPI GGNCC 4 cut(s) 282, 351, 364, 450
PstI CTGCAG 1 cut(s) 1113
RsaI GTAC 4 cut(s) 50, 734, 864, 906
RsaNI GTAC 4 cut(s) 49, 733, 863, 905
RseI CAYNNNNRTG 1 cut(s) 684
SacI GAGCTC 1 cut(s) 342
SapI GCTCTTC 1 cut(s) 1027
SaqAI TTAA 3 cut(s) 644, 915, 1062
SatI GCNGC 8 cut(s) 193, 265, 268, 271, 432, 623, 798, 1112
Sau3AI GATC 2 cut(s) 115, 745
Sau96I GGNCC 4 cut(s) 282, 351, 364, 450
SduI GDGCHC 3 cut(s) 342, 512, 551
SfaNI GCATC 1 cut(s) 870
SfcI CTRYAG 1 cut(s) 1109
SfuI TTCGAA 1 cut(s) 149
SinI GGWCC 3 cut(s) 351, 364, 450
SmiMI CAYNNNNRTG 1 cut(s) 684
SmlI CTYRAG 2 cut(s) 769, 970
SmoI CTYRAG 2 cut(s) 769, 970
Sse9I AATT 5 cut(s) 52, 763, 819, 993, 1066
SsiI CCGC 5 cut(s) 94, 267, 270, 273, 622
SspI AATATT 1 cut(s) 672
SspMI CTAG 3 cut(s) 393, 602, 1115
SstI GAGCTC 1 cut(s) 342
TaaI ACNGT 1 cut(s) 780
TaiI ACGT 3 cut(s) 66, 383, 850
TaqI TCGA 2 cut(s) 149, 878
TasI AATT 5 cut(s) 52, 763, 819, 993, 1066
TauI GCSGC 3 cut(s) 270, 273, 625
TfiI GAWTC 4 cut(s) 235, 422, 1047, 1205
Tru1I TTAA 3 cut(s) 644, 915, 1062
Tru9I TTAA 3 cut(s) 644, 915, 1062
TscAI CASTG 2 cut(s) 231, 379
TseFI GTSAC 2 cut(s) 376, 675
TseI GCWGC 5 cut(s) 192, 264, 431, 797, 1111
Tsp45I GTSAC 2 cut(s) 376, 675
TspDTI ATGAA 2 cut(s) 588, 677
TspGWI ACGGA 1 cut(s) 1107
TspRI CASTG 2 cut(s) 231, 379
Van91I CCANNNNNTGG 1 cut(s) 360
VneI GTGCAC 1 cut(s) 508
VpaK11BI GGWCC 3 cut(s) 351, 364, 450
XagI CCTNNNNNAGG 1 cut(s) 1164
XapI RAATTY 2 cut(s) 993, 1066
XspI CTAG 3 cut(s) 393, 602, 1115
ZraI GACGTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.