Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0007280

Physical Location & Seq

Genomic Coordinates Reverse (-)

8237592 .. 8241676

Gene Structure 4085 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G104500.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

ATGATGAGTGGATGCAAGAAAACCACATTAATTCCACGGCAATCCTCGTACAACTCCCTCTATGTCAATCCTCTCACTGACCAGAAACACAACCGCAGCTACAGCGAAGGTGTCAGCTTGAACACCAAAAACCACAATTTAGAGCCAAACCCATCAATTTTAAACCACAACAAAGAGAATGCCATGCCATACAAGCAAGAACAAGCTGCCTTGGACAATGACAAAGAGAATTTAGTCGCACAAGAAAATGGGTCTTCTTTTTTGATGCCATTGAAGCAGAAGAATTTGAAGTCTTTGTCCACAGGCTGCAGGGCCTTGAAGCCGTCCTCCCTTCAGTTTTGTATGCAAATGAATGAGCCTGACAAGGTACTCTTTGGTGGGTCCACAATCTGGGACCCACCCAGTAATGGGTCTGAGAATTCGAGCTCTTTGAAGATCTGGGACTACTCTGATTCTGAGGCTGCCCCTGCCTCTTCTTGGTCTACTCTGCCTAATAAGTCTTTGCTGTGCAGGCCACTGCCTATGGATGTAGGAAGGTGCACTTGTGTAATAGTGAAGGAAGCATGCCCAGAAGGATTAGATGGGGGTACTCTGTATTCTCTTCATACCAATGAAGGCAAGGGAAGGCAAGACCGGAAACTAGCTATTGCACACCATAAGCGGAGGAATGGGAAATCGGAATTAACTATTGCTCAGAATGTAAAGGGAATATTATCTCATTCAGATGACAGTTTTATTGGGAGTGTAAATGCAAACCTTATGGGTTCAAAATACCATATATGGGATCAGGGTAGTTGTCCCAATTCCTTGAGCAGACAGTCAAAGTCGCTTCTTGCTGTTGTATCGTTTACGCCAACAATTTTGAGCTGGACAGGAAGTTACAGACGTTTGAGGGCATGTATAGCCAAGCATCAATCCATGCAGTTAAAGAATACTACACAGGTACAACACATTAAGGGACTCCCAAAGGAATGGGAGGAGAAACTGGACAAAGTCCATCAGCTATGCTCAAGGGTTCCCAATTACAATACAGTAGGTCTACGAAAGGATATTTCAAAGCGATATGAGTTAGACTTCAGAGATAGGGGAAGAGCTGGGCTTAGAATCCAAAGTTCAGTTAAGAATTTCCAGCTGACTCTAGAGGAGAACGGAAAGCAGACAATTCTGCAGCTTGGAAGGGTTGGGAAATCAAAGTATGTGATGGATTACAGATATCCTTTGACAGGCTACCAAGCGTTTTGCATATGTTTGGCTTCTATTGATTCAAAGCTTTGTTGCACAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tub

Protein Analysis

429

Amino Acids

47.9

Weight (kDa)

9.32

Isoelectric Point (pI)

45.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16070 AT1G16070 AT1G16070
fragaria_vesca	FvH4_6g28190 FvH4_6g28190 FvH4_6g28190 FvH4_6g28190
malus_domestica	MD09G1228600.v1.1 MD17G1227000.v1.1
prunus_persica	Prupe.3G104500_v2.0.a1 Prupe.3G104500_v2.0.a1 Prupe.3G104500_v2.0.a1 Prupe.3G104500_v2.0.a1
pyrus_communis	pycom09g14750 pycom17g23020
rosa_chinensis	RchiOBHm_Chr2g0132241
rosa_laevigata	RLG00000019239
rosa_multiflora	Rmu_sc0006313.1_g000005
rosa_roxburghii	Rroxscaffold_2G00112260
rosa_rugosa	Rorug02G0302900
rosa_samantha	Rh2AG356100 Rh2BG362500 Rh2CG339500 Rh2DG379400
rosa_wichuraiana	Rw2G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	390
AccI	GTMKAC	2 cut(s)	482, 1039
AciI	CCGC	2 cut(s)	94, 661
AclWI	GGATC	1 cut(s)	792
AcsI	RAATTY	4 cut(s)	229, 283, 418, 1123
AcuI	CTGAAG	2 cut(s)	317, 1060
AfaI	GTAC	4 cut(s)	50, 369, 589, 945
AfiI	CCNNNNNNNGG	6 cut(s)	390, 407, 408, 477, 781, 1223
AgsI	TTSAA	8 cut(s)	121, 274, 289, 319, 433, 768, 1056, 1266
Alw21I	GWGCWC	2 cut(s)	428, 542
Alw44I	GTGCAC	1 cut(s)	538
AlwI	GGATC	1 cut(s)	792
AoxI	GGCC	2 cut(s)	312, 512
ApaLI	GTGCAC	1 cut(s)	538
ApeKI	GCWGC	5 cut(s)	96, 206, 306, 461, 1168
ApoI	RAATTY	4 cut(s)	229, 283, 418, 1123
AseI	ATTAAT	1 cut(s)	29
AspS9I	GGNCC	3 cut(s)	312, 381, 394
AvaII	GGWCC	2 cut(s)	381, 394
BaeGI	GKGCMC	1 cut(s)	542
BanII	GRGCYC	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	246
Bbv12I	GWGCWC	2 cut(s)	428, 542
BbvI	GCAGC	5 cut(s)	108, 193, 293, 448, 1180
BccI	CCATC	4 cut(s)	160, 575, 1005, 1195
BceAI	ACGGC	2 cut(s)	53, 307
BfaI	CTAG	2 cut(s)	641, 1139
BfmI	CTRYAG	3 cut(s)	100, 307, 1166
BglII	AGATCT	1 cut(s)	435
BisI	GCNGC	5 cut(s)	97, 207, 307, 462, 1169
BlsI	GCNGC	5 cut(s)	98, 208, 308, 463, 1170
Bme18I	GGWCC	2 cut(s)	381, 394
BmgT120I	GGNCC	3 cut(s)	312, 381, 394
BmiI	GGNNCC	4 cut(s)	382, 395, 396, 1017
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	3 cut(s)	2, 255, 919
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	1 cut(s)	246
BpuEI	CTTGAG	2 cut(s)	829, 994
BsaJI	CCNNGG	2 cut(s)	35, 210
BsaWI	WCCGGW	1 cut(s)	633
Bsc4I	CCNNNNNNNGG	6 cut(s)	390, 407, 408, 477, 781, 1223
Bse1I	ACTGG	2 cut(s)	402, 990
BseDI	CCNNGG	2 cut(s)	35, 210
BseGI	GGATG	2 cut(s)	17, 532
BseLI	CCNNNNNNNGG	6 cut(s)	390, 407, 408, 477, 781, 1223
BseMII	CTCAG	3 cut(s)	405, 447, 707
BseNI	ACTGG	2 cut(s)	402, 990
BseRI	GAGGAG	2 cut(s)	992, 1157
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	5 cut(s)	108, 193, 293, 448, 1180
BseYI	CCCAGC	1 cut(s)	1094
BsgI	GTGCAG	1 cut(s)	529
BshFI	GGCC	2 cut(s)	314, 514
BsiHKAI	GWGCWC	2 cut(s)	428, 542
BsiSI	CCGG	1 cut(s)	634
BslFI	GGGAC	4 cut(s)	407, 455, 783, 972
BslI	CCNNNNNNNGG	6 cut(s)	390, 407, 408, 477, 781, 1223
BsmFI	GGGAC	4 cut(s)	407, 455, 783, 972
BsmI	GAATGC	1 cut(s)	184
BsnI	GGCC	2 cut(s)	314, 514
Bsp1286I	GDGCHC	2 cut(s)	428, 542
Bsp143I	GATC	2 cut(s)	435, 784
BspACI	CCGC	2 cut(s)	94, 661
BspANI	GGCC	2 cut(s)	314, 514
BspCNI	CTCAG	3 cut(s)	406, 448, 706
BspLI	GGNNCC	4 cut(s)	382, 395, 396, 1017
BspMAI	CTGCAG	2 cut(s)	311, 1170
BspPI	GGATC	1 cut(s)	792
BspQI	GCTCTTC	1 cut(s)	1084
BsrI	ACTGG	2 cut(s)	402, 990
BssECI	CCNNGG	2 cut(s)	35, 210
BssMI	GATC	2 cut(s)	435, 784
BssT1I	CCWWGG	1 cut(s)	210
Bst4CI	ACNGT	4 cut(s)	731, 819, 1033, 1282
Bst6I	CTCTTC	3 cut(s)	478, 606, 1084
BstC8I	GCNNGC	2 cut(s)	512, 565
BstDEI	CTNAG	4 cut(s)	414, 456, 693, 1100
BstDSI	CCRYGG	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	1221
BstF5I	GGATG	2 cut(s)	17, 532
BstKTI	GATC	2 cut(s)	438, 787
BstMBI	GATC	2 cut(s)	435, 784
BstMWI	GCNNNNNNNGC	6 cut(s)	102, 193, 274, 467, 511, 902
BstNSI	RCATGY	2 cut(s)	567, 900
BstSFI	CTRYAG	3 cut(s)	100, 307, 1166
BstSLI	GKGCMC	1 cut(s)	542
BstV1I	GCAGC	5 cut(s)	108, 193, 293, 448, 1180
BstV2I	GAAGAC	1 cut(s)	246
BstX2I	RGATCY	1 cut(s)	435
BstXI	CCANNNNNNTGG	1 cut(s)	972
BstYI	RGATCY	1 cut(s)	435
BsuRI	GGCC	2 cut(s)	314, 514
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	17, 532
BtsI	GCAGTG	1 cut(s)	515
BtsIMutI	CAGTG	2 cut(s)	75, 515
Cac8I	GCNNGC	2 cut(s)	512, 565
Cfr13I	GGNCC	3 cut(s)	312, 381, 394
Csp6I	GTAC	4 cut(s)	49, 368, 588, 944
CviAII	CATG	4 cut(s)	184, 564, 897, 919
CviQI	GTAC	4 cut(s)	49, 368, 588, 944
DdeI	CTNAG	4 cut(s)	414, 456, 693, 1100
DpnI	GATC	2 cut(s)	437, 786
DpnII	GATC	2 cut(s)	435, 784
DraI	TTTAAA	1 cut(s)	162
Eam1104I	CTCTTC	3 cut(s)	478, 606, 1084
EarI	CTCTTC	3 cut(s)	478, 606, 1084
Ecl136II	GAGCTC	1 cut(s)	426
Eco130I	CCWWGG	1 cut(s)	210
Eco24I	GRGCYC	1 cut(s)	428
Eco32I	GATATC	1 cut(s)	1214
Eco47I	GGWCC	2 cut(s)	381, 394
Eco53kI	GAGCTC	1 cut(s)	426
Eco57I	CTGAAG	2 cut(s)	317, 1060
EcoICRI	GAGCTC	1 cut(s)	426
EcoNI	CCTNNNNNAGG	1 cut(s)	1221
EcoO109I	RGGNCCY	2 cut(s)	312, 394
EcoRI	GAATTC	1 cut(s)	418
EcoRV	GATATC	1 cut(s)	1214
EcoT14I	CCWWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	4 cut(s)	187, 567, 900, 922
FalI	AAGNNNNNCTT	4 cut(s)	356, 388, 526, 558
FaqI	GGGAC	4 cut(s)	407, 455, 783, 972
FatI	CATG	4 cut(s)	183, 563, 896, 918
FauNDI	CATATG	1 cut(s)	1244
FblI	GTMKAC	2 cut(s)	482, 1039
Fnu4HI	GCNGC	5 cut(s)	97, 207, 307, 462, 1169
FokI	GGATG	2 cut(s)	24, 539
FriOI	GRGCYC	1 cut(s)	428
Fsp4HI	GCNGC	5 cut(s)	97, 207, 307, 462, 1169
FspBI	CTAG	2 cut(s)	641, 1139
GluI	GCNGC	5 cut(s)	97, 207, 307, 462, 1169
GsaI	CCCAGC	1 cut(s)	1098
HaeIII	GGCC	2 cut(s)	314, 514
HapII	CCGG	1 cut(s)	634
Hin1II	CATG	4 cut(s)	187, 567, 900, 922
HindIII	AAGCTT	1 cut(s)	1268
HinfI	GANTC	5 cut(s)	452, 960, 1104, 1135, 1262
HpaII	CCGG	1 cut(s)	634
Hpy166II	GTNNAC	6 cut(s)	300, 384, 483, 540, 849, 1040
Hpy188I	TCNGA	7 cut(s)	415, 451, 457, 679, 696, 724, 1079
Hpy188III	TCNNGA	1 cut(s)	1139
Hpy8I	GTNNAC	6 cut(s)	300, 384, 483, 540, 849, 1040
HpyAV	CCTTC	8 cut(s)	101, 341, 528, 550, 566, 608, 618, 1170
HpyCH4III	ACNGT	4 cut(s)	731, 819, 1033, 1282
HpyCH4IV	ACGT	1 cut(s)	886
HpyF10VI	GCNNNNNNNGC	6 cut(s)	102, 193, 274, 467, 511, 902
HpyF3I	CTNAG	4 cut(s)	414, 456, 693, 1100
HpySE526I	ACGT	1 cut(s)	886
Hsp92II	CATG	4 cut(s)	187, 567, 900, 922
KflI	GGGWCCC	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	435, 784
LguI	GCTCTTC	1 cut(s)	1084
Lsp1109I	GCAGC	5 cut(s)	108, 193, 293, 448, 1180
LweI	GCATC	3 cut(s)	2, 255, 919
MaeI	CTAG	2 cut(s)	641, 1139
MaeII	ACGT	1 cut(s)	886
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	2 cut(s)	437, 786
MboI	GATC	2 cut(s)	435, 784
MboII	GAAGA	6 cut(s)	246, 292, 445, 465, 593, 1101
MflI	RGATCY	1 cut(s)	435
MhlI	GDGCHC	2 cut(s)	428, 542
MlyI	GAGTC	2 cut(s)	954, 1129
MseI	TTAA	6 cut(s)	29, 161, 683, 926, 954, 1119
MslI	CAYNNNNRTG	2 cut(s)	609, 723
MspA1I	CMGCKG	1 cut(s)	1132
MspI	CCGG	1 cut(s)	634
Mva1269I	GAATGC	1 cut(s)	184
MwoI	GCNNNNNNNGC	6 cut(s)	102, 193, 274, 467, 511, 902
NdeI	CATATG	1 cut(s)	1244
NdeII	GATC	2 cut(s)	435, 784
NlaIII	CATG	4 cut(s)	187, 567, 900, 922
NlaIV	GGNNCC	4 cut(s)	382, 395, 396, 1017
NspI	RCATGY	2 cut(s)	567, 900
PaeI	GCATGC	1 cut(s)	567
PciSI	GCTCTTC	1 cut(s)	1084
PctI	GAATGC	1 cut(s)	184
PfeI	GAWTC	3 cut(s)	452, 1104, 1262
PflFI	GACNNNGTC	1 cut(s)	992
PflMI	CCANNNNNTGG	1 cut(s)	390
PkrI	GCNGC	5 cut(s)	98, 208, 308, 463, 1170
PleI	GAGTC	2 cut(s)	954, 1129
PpsI	GAGTC	2 cut(s)	954, 1129
PpuMI	RGGWCCY	1 cut(s)	394
PshBI	ATTAAT	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	428
Psp5II	RGGWCCY	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	1094
PspN4I	GGNNCC	4 cut(s)	382, 395, 396, 1017
PspPI	GGNCC	3 cut(s)	312, 381, 394
PspPPI	RGGWCCY	1 cut(s)	394
PstI	CTGCAG	2 cut(s)	311, 1170
PsuI	RGATCY	1 cut(s)	435
PsyI	GACNNNGTC	1 cut(s)	992
PvuII	CAGCTG	1 cut(s)	1132
RsaI	GTAC	4 cut(s)	50, 369, 589, 945
RsaNI	GTAC	4 cut(s)	49, 368, 588, 944
RseI	CAYNNNNRTG	2 cut(s)	609, 723
SacI	GAGCTC	1 cut(s)	428
SapI	GCTCTTC	1 cut(s)	1084
SaqAI	TTAA	6 cut(s)	29, 161, 683, 926, 954, 1119
SatI	GCNGC	5 cut(s)	97, 207, 307, 462, 1169
Sau3AI	GATC	2 cut(s)	435, 784
Sau96I	GGNCC	3 cut(s)	312, 381, 394
SchI	GAGTC	2 cut(s)	954, 1129
SduI	GDGCHC	2 cut(s)	428, 542
SfaNI	GCATC	3 cut(s)	2, 255, 919
SfcI	CTRYAG	3 cut(s)	100, 307, 1166
SinI	GGWCC	2 cut(s)	381, 394
SmiMI	CAYNNNNRTG	2 cut(s)	609, 723
SmlI	CTYRAG	2 cut(s)	808, 1009
SmoI	CTYRAG	2 cut(s)	808, 1009
SphI	GCATGC	1 cut(s)	567
SsiI	CCGC	2 cut(s)	94, 661
SspI	AATATT	1 cut(s)	711
SspMI	CTAG	2 cut(s)	641, 1139
SstI	GAGCTC	1 cut(s)	428
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	4 cut(s)	731, 819, 1033, 1282
TaiI	ACGT	1 cut(s)	889
TaqI	TCGA	1 cut(s)	422
TfiI	GAWTC	3 cut(s)	452, 1104, 1262
Tru1I	TTAA	6 cut(s)	29, 161, 683, 926, 954, 1119
Tru9I	TTAA	6 cut(s)	29, 161, 683, 926, 954, 1119
TscAI	CASTG	2 cut(s)	82, 522
TseI	GCWGC	5 cut(s)	96, 206, 306, 461, 1168
TspDTI	ATGAA	3 cut(s)	365, 593, 627
TspGWI	ACGGA	1 cut(s)	1164
TspRI	CASTG	2 cut(s)	82, 522
Tth111I	GACNNNGTC	1 cut(s)	992
Van91I	CCANNNNNTGG	1 cut(s)	390
VneI	GTGCAC	1 cut(s)	538
VpaK11BI	GGWCC	2 cut(s)	381, 394
VspI	ATTAAT	1 cut(s)	29
XagI	CCTNNNNNAGG	1 cut(s)	1221
XapI	RAATTY	4 cut(s)	229, 283, 418, 1123
XbaI	TCTAGA	1 cut(s)	1138
XceI	RCATGY	2 cut(s)	567, 900
XmiI	GTMKAC	2 cut(s)	482, 1039
XspI	CTAG	2 cut(s)	641, 1139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.