Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0007280

Physical Location & Seq

Genomic Coordinates Reverse (-)

21401868 .. 21404591

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g23020.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1269 bp

ATGGCTGGTTGCAAGAAAACCACATTAGTTCTACGGCAATCCTCATACAACTCTCTCTATGTCGATCCCCTCGCATACCAGAAACACAGCGGCAGCCACAGCCAAGGCATCGCCTTCATCTCCAAGAACGGCAATTCGGAGCCGAACCCATCAGCCTTAAACGTCAACAAAGAGAACGCAATGCCCAAGAAGCCACAGAAGGCCGTGCCCGACAGCGACAAGGAGAATTTGGTCGCACATGAACATGGGTCTTCCTCTTTTGCGATGCAGCCATTGAAGCAGAGGAACTTGAAGTCTCTGTCCACTGGCTGCAGGGCCCTGAAGCCCTCCTCGCTTCAGTTCTGTATGCAGGCGAGCGAGCCGGAGAAGGCACTCTTCGGTGGGTCCACAATGTGGGACCCGCCCAGCAATGGGTCCGACAACTCGAGCTCTTTGAACATCTGGGACTACTCCGACTCTGAGGCTGCCCCTGCCTCCTCTTGGTCTACACTGCCTAACAAGTCATTGCTTTGCAGGCCATTGCCAATGGATGTGGGAAGATGCACATGTGTGATAGTGAAGGAAGCAACCACAGAAGCAATAGATGGGGGCACTCTCTATTCTCTTTATACCAATGAAGGCAAGGGAAGGCAGGACCGGAAACTAGCTATTGCTCACCATAAGCGGCGGAATGGGAAATCTGAGTTGACAATTGCTCAGAATGTGAAGGGAATACTGTCTCATTCGGATGACAGTTTTATTGGTATTGTAAATGCTAACCTCATGGGTTCAAAATACCACATATGGGATCAGGGTGGTCATCCCAATTCCTTGAGCAAAGAGGCTAAATCACTTGCCATTGTAGCGTTCACGCCAACAATCCCGAGCTGGACAGGAAGTTACAGACGTATAAGGGCATATATACCCAAGCACCAATCCATGCAGTTAAAGAACACAACGCAGGTACAACACAGTAAGGGACTCCCAAAGGACTGGGAAGGGAAGCTTGACAAAGTTCATCAGCTATCCTCAAGGGTTCCCCATTACAATAAAATTTCAAAGCAGTATGAGCTAGATTTCAGAGACAGGGGAAGAGCGGGTCTTAGAATCCAAAGTTCAGTCAAGAATTTCCAACTGACACTGGAGGAGAACGGAAAGCAGACAATTCTGCAGCTCGGAAGGGTTGGAAAATCAAAGTATGTGATGGATTACAGATATCCTTTGACAGGCTACCAAGCGTTTTGCATATGCTTGTCTTCAATTGATTCAAAGCTTTGTTGCACTGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tub

Protein Analysis

423

Amino Acids

46.72

Weight (kDa)

9.46

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16070 AT1G16070 AT1G16070
fragaria_vesca	FvH4_6g28190 FvH4_6g28190 FvH4_6g28190 FvH4_6g28190
malus_domestica	MD09G1228600.v1.1 MD17G1227000.v1.1
prunus_persica	Prupe.3G104500_v2.0.a1 Prupe.3G104500_v2.0.a1 Prupe.3G104500_v2.0.a1 Prupe.3G104500_v2.0.a1
pyrus_communis	pycom09g14750 pycom17g23020
rosa_chinensis	RchiOBHm_Chr2g0132241
rosa_laevigata	RLG00000019239
rosa_multiflora	Rmu_sc0006313.1_g000005
rosa_roxburghii	Rroxscaffold_2G00112260
rosa_rugosa	Rorug02G0302900
rosa_samantha	Rh2AG356100 Rh2BG362500 Rh2CG339500 Rh2DG379400
rosa_wichuraiana	Rw2G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	931
AccB7I	CCANNNNNTGG	1 cut(s)	393
AccBSI	CCGCTC	1 cut(s)	1076
AccI	GTMKAC	1 cut(s)	485
AciI	CCGC	5 cut(s)	90, 401, 664, 667, 1076
AclWI	GGATC	2 cut(s)	59, 795
AcsI	RAATTY	3 cut(s)	226, 1032, 1105
AcuI	CTGAAG	2 cut(s)	320, 341
AdeI	CACNNNGTG	1 cut(s)	393
AfaI	GTAC	1 cut(s)	945
AfiI	CCNNNNNNNGG	6 cut(s)	393, 410, 411, 480, 784, 1205
AflIII	ACRYGT	1 cut(s)	545
AgsI	TTSAA	7 cut(s)	277, 292, 436, 771, 1038, 1239, 1248
AleI	CACNNNNGTG	1 cut(s)	548
AluBI	AGCT	8 cut(s)	429, 647, 867, 985, 1003, 1051, 1153, 1252
AluI	AGCT	8 cut(s)	429, 647, 867, 985, 1003, 1051, 1153, 1252
Alw21I	GWGCWC	1 cut(s)	431
Alw26I	GTCTC	3 cut(s)	300, 723, 1056
AlwI	GGATC	2 cut(s)	59, 795
Ama87I	CYCGRG	2 cut(s)	424, 862
AoxI	GGCC	3 cut(s)	201, 315, 515
ApaI	GGGCCC	1 cut(s)	319
ApeKI	GCWGC	5 cut(s)	93, 268, 309, 464, 1150
ApoI	RAATTY	3 cut(s)	226, 1032, 1105
AspS9I	GGNCC	6 cut(s)	315, 316, 384, 397, 414, 634
AsuHPI	GGTGA	1 cut(s)	647
AvaI	CYCGRG	2 cut(s)	424, 862
AvaII	GGWCC	4 cut(s)	384, 397, 414, 634
BaeGI	GKGCMC	3 cut(s)	210, 319, 593
BanII	GRGCYC	2 cut(s)	319, 431
BbsI	GAAGAC	2 cut(s)	243, 1227
Bbv12I	GWGCWC	1 cut(s)	431
BbvI	GCAGC	5 cut(s)	105, 280, 296, 451, 1162
BccI	CCATC	3 cut(s)	157, 578, 1177
BceAI	ACGGC	3 cut(s)	50, 145, 188
BcoDI	GTCTC	3 cut(s)	300, 723, 1056
BfaI	CTAG	2 cut(s)	644, 1052
BfmI	CTRYAG	2 cut(s)	310, 1148
BfuAI	ACCTGC	1 cut(s)	931
BisI	GCNGC	7 cut(s)	91, 94, 269, 310, 465, 665, 1151
BlsI	GCNGC	7 cut(s)	92, 95, 270, 311, 466, 666, 1152
Bme18I	GGWCC	4 cut(s)	384, 397, 414, 634
BmeT110I	CYCGRG	2 cut(s)	424, 862
BmgT120I	GGNCC	6 cut(s)	315, 316, 384, 397, 414, 634
BmiI	GGNNCC	7 cut(s)	141, 317, 385, 398, 399, 415, 1017
BmrI	ACTGGG	1 cut(s)	982
BmsI	GCATC	3 cut(s)	117, 255, 530
BmuI	ACTGGG	1 cut(s)	982
BpiI	GAAGAC	2 cut(s)	243, 1227
BpmI	CTGGAG	1 cut(s)	1142
BpuEI	CTTGAG	2 cut(s)	832, 994
BsaJI	CCNNGG	1 cut(s)	103
BsaWI	WCCGGW	1 cut(s)	636
Bsc4I	CCNNNNNNNGG	6 cut(s)	393, 410, 411, 480, 784, 1205
Bse1I	ACTGG	3 cut(s)	310, 977, 1125
Bse3DI	GCAATG	4 cut(s)	186, 415, 503, 518
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	3 cut(s)	535, 733, 799
BseLI	CCNNNNNNNGG	6 cut(s)	393, 410, 411, 480, 784, 1205
BseMI	GCAATG	4 cut(s)	186, 415, 503, 518
BseMII	CTCAG	3 cut(s)	450, 672, 710
BseNI	ACTGG	3 cut(s)	310, 977, 1125
BseRI	GAGGAG	3 cut(s)	319, 466, 1139
BseSI	GKGCMC	3 cut(s)	210, 319, 593
BseXI	GCAGC	5 cut(s)	105, 280, 296, 451, 1162
BseYI	CCCAGC	1 cut(s)	404
BshFI	GGCC	3 cut(s)	203, 317, 517
BsiHKAI	GWGCWC	1 cut(s)	431
BsiHKCI	CYCGRG	2 cut(s)	424, 862
BsiSI	CCGG	2 cut(s)	362, 637
BslFI	GGGAC	3 cut(s)	410, 458, 972
BslI	CCNNNNNNNGG	6 cut(s)	393, 410, 411, 480, 784, 1205
BsmAI	GTCTC	3 cut(s)	300, 723, 1056
BsmFI	GGGAC	3 cut(s)	410, 458, 972
BsnI	GGCC	3 cut(s)	203, 317, 517
BsoBI	CYCGRG	2 cut(s)	424, 862
Bsp120I	GGGCCC	1 cut(s)	315
Bsp1286I	GDGCHC	4 cut(s)	210, 319, 431, 593
Bsp143I	GATC	2 cut(s)	64, 787
BspACI	CCGC	5 cut(s)	90, 401, 664, 667, 1076
BspANI	GGCC	3 cut(s)	203, 317, 517
BspCNI	CTCAG	3 cut(s)	451, 673, 709
BspLI	GGNNCC	7 cut(s)	141, 317, 385, 398, 399, 415, 1017
BspMAI	CTGCAG	2 cut(s)	314, 1152
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	2 cut(s)	59, 795
BspQI	GCTCTTC	1 cut(s)	1066
BsrBI	CCGCTC	1 cut(s)	1076
BsrDI	GCAATG	4 cut(s)	186, 415, 503, 518
BsrI	ACTGG	3 cut(s)	310, 977, 1125
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	64, 787
BssT1I	CCWWGG	1 cut(s)	103
Bst4CI	ACNGT	4 cut(s)	717, 734, 953, 1264
Bst6I	CTCTTC	2 cut(s)	380, 1066
BstC8I	GCNNGC	4 cut(s)	351, 355, 359, 515
BstDEI	CTNAG	4 cut(s)	459, 681, 696, 1082
BstENI	CCTNNNNNAGG	1 cut(s)	1203
BstF5I	GGATG	3 cut(s)	535, 733, 799
BstKTI	GATC	2 cut(s)	67, 790
BstMAI	GTCTC	3 cut(s)	300, 723, 1056
BstMBI	GATC	2 cut(s)	64, 787
BstMWI	GCNNNNNNNGC	8 cut(s)	99, 190, 277, 331, 470, 514, 842, 1048
BstNSI	RCATGY	1 cut(s)	549
BstSFI	CTRYAG	2 cut(s)	310, 1148
BstSLI	GKGCMC	3 cut(s)	210, 319, 593
BstV1I	GCAGC	5 cut(s)	105, 280, 296, 451, 1162
BstV2I	GAAGAC	2 cut(s)	243, 1227
BstXI	CCANNNNNNTGG	1 cut(s)	972
BsuRI	GGCC	3 cut(s)	203, 317, 517
BtgZI	GCGATG	2 cut(s)	94, 278
BtsCI	GGATG	3 cut(s)	535, 733, 799
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	4 cut(s)	303, 488, 1118, 1260
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	4 cut(s)	351, 355, 359, 515
Cfr13I	GGNCC	6 cut(s)	315, 316, 384, 397, 414, 634
Csp6I	GTAC	1 cut(s)	944
CspCI	CAANNNNNGTGG	2 cut(s)	513, 548
CviAII	CATG	5 cut(s)	239, 245, 546, 763, 919
CviQI	GTAC	1 cut(s)	944
DdeI	CTNAG	4 cut(s)	459, 681, 696, 1082
DpnI	GATC	2 cut(s)	66, 789
DpnII	GATC	2 cut(s)	64, 787
DraIII	CACNNNGTG	1 cut(s)	393
Eam1104I	CTCTTC	2 cut(s)	380, 1066
EarI	CTCTTC	2 cut(s)	380, 1066
EciI	GGCGGA	1 cut(s)	682
Ecl136II	GAGCTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	319, 431
Eco32I	GATATC	1 cut(s)	1196
Eco47I	GGWCC	4 cut(s)	384, 397, 414, 634
Eco53kI	GAGCTC	1 cut(s)	429
Eco57I	CTGAAG	2 cut(s)	320, 341
Eco88I	CYCGRG	2 cut(s)	424, 862
EcoICRI	GAGCTC	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	1203
EcoO109I	RGGNCCY	3 cut(s)	315, 316, 397
EcoRV	GATATC	1 cut(s)	1196
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	2 cut(s)	319, 431
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	5 cut(s)	242, 248, 549, 766, 922
FalI	AAGNNNNNCTT	4 cut(s)	359, 391, 969, 1001
FaqI	GGGAC	3 cut(s)	410, 458, 972
FatI	CATG	5 cut(s)	238, 244, 545, 762, 918
FauI	CCCGC	2 cut(s)	408, 1069
FauNDI	CATATG	2 cut(s)	782, 1226
FblI	GTMKAC	1 cut(s)	485
Fnu4HI	GCNGC	7 cut(s)	91, 94, 269, 310, 465, 665, 1151
FokI	GGATG	3 cut(s)	542, 740, 786
FriOI	GRGCYC	2 cut(s)	319, 431
Fsp4HI	GCNGC	7 cut(s)	91, 94, 269, 310, 465, 665, 1151
FspBI	CTAG	2 cut(s)	644, 1052
GluI	GCNGC	7 cut(s)	91, 94, 269, 310, 465, 665, 1151
GsaI	CCCAGC	1 cut(s)	408
GsuI	CTGGAG	1 cut(s)	1142
HaeIII	GGCC	3 cut(s)	203, 317, 517
HapII	CCGG	2 cut(s)	362, 637
Hin1II	CATG	5 cut(s)	242, 248, 549, 766, 922
HincII	GTYRAC	2 cut(s)	166, 687
HindII	GTYRAC	2 cut(s)	166, 687
HindIII	AAGCTT	2 cut(s)	983, 1250
HinfI	GANTC	4 cut(s)	455, 960, 1086, 1244
HpaII	CCGG	2 cut(s)	362, 637
HphI	GGTGA	1 cut(s)	647
Hpy166II	GTNNAC	6 cut(s)	166, 303, 387, 486, 687, 849
Hpy188I	TCNGA	9 cut(s)	139, 418, 454, 460, 682, 699, 727, 1061, 1157
Hpy188III	TCNNGA	2 cut(s)	862, 1102
Hpy8I	GTNNAC	6 cut(s)	166, 303, 387, 486, 687, 849
HpyAV	CCTTC	9 cut(s)	124, 193, 361, 553, 611, 621, 700, 971, 1152
HpyCH4III	ACNGT	4 cut(s)	717, 734, 953, 1264
HpyCH4IV	ACGT	2 cut(s)	162, 886
HpyF10VI	GCNNNNNNNGC	8 cut(s)	99, 190, 277, 331, 470, 514, 842, 1048
HpyF3I	CTNAG	4 cut(s)	459, 681, 696, 1082
HpySE526I	ACGT	2 cut(s)	162, 886
Hsp92II	CATG	5 cut(s)	242, 248, 549, 766, 922
KflI	GGGWCCC	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	64, 787
LguI	GCTCTTC	1 cut(s)	1066
LmnI	GCTCC	1 cut(s)	139
Lsp1109I	GCAGC	5 cut(s)	105, 280, 296, 451, 1162
LweI	GCATC	3 cut(s)	117, 255, 530
MaeI	CTAG	2 cut(s)	644, 1052
MaeII	ACGT	2 cut(s)	162, 886
MaeIII	GTNAC	1 cut(s)	878
MalI	GATC	2 cut(s)	66, 789
MbiI	CCGCTC	1 cut(s)	1076
MboI	GATC	2 cut(s)	64, 787
MboII	GAAGA	5 cut(s)	243, 367, 549, 1083, 1227
MfeI	CAATTG	2 cut(s)	690, 1239
MhlI	GDGCHC	4 cut(s)	210, 319, 431, 593
MluCI	AATT	8 cut(s)	133, 226, 690, 805, 1032, 1105, 1143, 1239
MlyI	GAGTC	2 cut(s)	449, 954
MmeI	TCCRAC	4 cut(s)	441, 477, 1135, 1144
MseI	TTAA	2 cut(s)	158, 926
MslI	CAYNNNNRTG	3 cut(s)	243, 548, 726
MspA1I	CMGCKG	1 cut(s)	90
MspI	CCGG	2 cut(s)	362, 637
MunI	CAATTG	2 cut(s)	690, 1239
MwoI	GCNNNNNNNGC	8 cut(s)	99, 190, 277, 331, 470, 514, 842, 1048
NdeI	CATATG	2 cut(s)	782, 1226
NdeII	GATC	2 cut(s)	64, 787
NlaIII	CATG	5 cut(s)	242, 248, 549, 766, 922
NlaIV	GGNNCC	7 cut(s)	141, 317, 385, 398, 399, 415, 1017
NspI	RCATGY	1 cut(s)	549
OliI	CACNNNNGTG	1 cut(s)	548
PaeR7I	CTCGAG	1 cut(s)	424
PciI	ACATGT	1 cut(s)	545
PciSI	GCTCTTC	1 cut(s)	1066
PfeI	GAWTC	2 cut(s)	1086, 1244
PflMI	CCANNNNNTGG	1 cut(s)	393
PkrI	GCNGC	7 cut(s)	92, 95, 270, 311, 466, 666, 1152
PleI	GAGTC	2 cut(s)	449, 954
PpsI	GAGTC	2 cut(s)	449, 954
PpuMI	RGGWCCY	1 cut(s)	397
PscI	ACATGT	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	431
Psp5II	RGGWCCY	1 cut(s)	397
PspFI	CCCAGC	1 cut(s)	404
PspN4I	GGNNCC	7 cut(s)	141, 317, 385, 398, 399, 415, 1017
PspOMI	GGGCCC	1 cut(s)	315
PspPI	GGNCC	6 cut(s)	315, 316, 384, 397, 414, 634
PspPPI	RGGWCCY	1 cut(s)	397
PspXI	VCTCGAGB	1 cut(s)	424
PstI	CTGCAG	2 cut(s)	314, 1152
RsaI	GTAC	1 cut(s)	945
RsaNI	GTAC	1 cut(s)	944
RseI	CAYNNNNRTG	3 cut(s)	243, 548, 726
SacI	GAGCTC	1 cut(s)	431
SapI	GCTCTTC	1 cut(s)	1066
SaqAI	TTAA	2 cut(s)	158, 926
SatI	GCNGC	7 cut(s)	91, 94, 269, 310, 465, 665, 1151
Sau3AI	GATC	2 cut(s)	64, 787
Sau96I	GGNCC	6 cut(s)	315, 316, 384, 397, 414, 634
SchI	GAGTC	2 cut(s)	449, 954
SduI	GDGCHC	4 cut(s)	210, 319, 431, 593
SfaNI	GCATC	3 cut(s)	117, 255, 530
SfcI	CTRYAG	2 cut(s)	310, 1148
Sfr274I	CTCGAG	1 cut(s)	424
SinI	GGWCC	4 cut(s)	384, 397, 414, 634
SlaI	CTCGAG	1 cut(s)	424
SmiMI	CAYNNNNRTG	3 cut(s)	243, 548, 726
SmlI	CTYRAG	3 cut(s)	424, 811, 1009
SmoI	CTYRAG	3 cut(s)	424, 811, 1009
Sse9I	AATT	8 cut(s)	133, 226, 690, 805, 1032, 1105, 1143, 1239
SsiI	CCGC	5 cut(s)	90, 401, 664, 667, 1076
SspMI	CTAG	2 cut(s)	644, 1052
SstI	GAGCTC	1 cut(s)	431
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	4 cut(s)	717, 734, 953, 1264
TaiI	ACGT	2 cut(s)	165, 889
TaqI	TCGA	2 cut(s)	63, 425
TasI	AATT	8 cut(s)	133, 226, 690, 805, 1032, 1105, 1143, 1239
TauI	GCSGC	2 cut(s)	93, 667
TfiI	GAWTC	2 cut(s)	1086, 1244
Tru1I	TTAA	2 cut(s)	158, 926
Tru9I	TTAA	2 cut(s)	158, 926
TscAI	CASTG	4 cut(s)	310, 495, 1125, 1267
TseI	GCWGC	5 cut(s)	93, 268, 309, 464, 1150
TspDTI	ATGAA	4 cut(s)	106, 255, 630, 986
TspGWI	ACGGA	1 cut(s)	1146
TspRI	CASTG	4 cut(s)	310, 495, 1125, 1267
Van91I	CCANNNNNTGG	1 cut(s)	393
VpaK11BI	GGWCC	4 cut(s)	384, 397, 414, 634
XagI	CCTNNNNNAGG	1 cut(s)	1203
XapI	RAATTY	3 cut(s)	226, 1032, 1105
XceI	RCATGY	1 cut(s)	549
XhoI	CTCGAG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	485
XspI	CTAG	2 cut(s)	644, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.