Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006313.1

Orthogroup ID

OG0007280

Physical Location & Seq

Genomic Coordinates Reverse (-)

22217 .. 25327

Gene Structure 3111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006313.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

atgatgagtggttgcaagagaacggcactaatgccacggcaatcgtcgtacaattccctctacgtcaaccccctcaacgacccaaaacacaaccgcagttccagcgaaggcgacgatcattccaaaccaaaccagttggctttggcttcgaacgacgaagacaaagagaacgcaacgcccaacagcaacagcagcgacaaggagaacttgctggcgaagaagccactgaagcagaatcaactgaacaagtctttctccaccggctgcggcggcggcggtggggccttgaagccctcgtcgcttcagttctgtatgcagatgagtgagccggagaaggagctctttggtgggtccaagatgtgggaccagcccagtgtgacgtcggacaactctagttctctgaagatatgggactactcggattctgaggctgctcctgcttcttcttggtccactctgcccaataagtctttgctgtgtaggccgttacctatggatgtaggaaggtgcacttgtgttatagtgaaggaaaaatctccagatgggggctctctgtattctctctataccaatgaaggcaagggaaggcaggacaggaaactagctgttgcacaccataagcggcgtaatggaaagtctgagttaactattgctcaaaatatgaagggaatattgtcacattcagatgatagttttattgggatggtaactgctaatctcatgggttcaaagtaccacatatgggatcaggggaagcaaccaaattgcttgagtaaacagtctaaatcacttcttgctgctgtattattcacacccacaatttcaacttggacaggaagttacagacgtataagggcatatgtacccaagcaccaatcgatgcagttgaagaatactgctcaggtacaacacattaagggactgccaacagactgggaggggaaaatggacaaaatccatcagctatactcaagggttccactttacaataaaatttcaaagcaatacgagttggacttcagagataggggaagagctggacttagaatccaaagttcagttaaaaatttccagctaactctggaggagaacggaaagcagacaatcctgcagctaggaagggttgggaagtcaaaatatgtgatggattacagatatcctttgacaggctaccaagcattttgcatttgtctggcttctattgattcaaagctctgttgctcagtataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tub

Protein Analysis

409

Amino Acids

45.57

Weight (kDa)

9.39

Isoelectric Point (pI)

44.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007280)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16070 AT1G16070 AT1G16070
fragaria_vesca	FvH4_6g28190 FvH4_6g28190 FvH4_6g28190 FvH4_6g28190
malus_domestica	MD09G1228600.v1.1 MD17G1227000.v1.1
prunus_persica	Prupe.3G104500_v2.0.a1 Prupe.3G104500_v2.0.a1 Prupe.3G104500_v2.0.a1 Prupe.3G104500_v2.0.a1
pyrus_communis	pycom09g14750 pycom17g23020
rosa_chinensis	RchiOBHm_Chr2g0132241
rosa_laevigata	RLG00000019239
rosa_multiflora	Rmu_sc0006313.1_g000005
rosa_roxburghii	Rroxscaffold_2G00112260
rosa_rugosa	Rorug02G0302900
rosa_samantha	Rh2AG356100 Rh2BG362500 Rh2CG339500 Rh2DG379400
rosa_wichuraiana	Rw2G028930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	383
AccB7I	CCANNNNNTGG	1 cut(s)	360
AciI	CCGC	6 cut(s)	94, 267, 270, 273, 276, 622
AclWI	GGATC	1 cut(s)	753
AcsI	RAATTY	2 cut(s)	993, 1066
AcuI	CTGAAG	4 cut(s)	248, 287, 422, 1003
AcyI	GRCGYC	1 cut(s)	380
AfaI	GTAC	4 cut(s)	50, 734, 864, 906
AfiI	CCNNNNNNNGG	4 cut(s)	360, 545, 742, 1166
AgsI	TTSAA	6 cut(s)	289, 729, 825, 889, 999, 1209
AluBI	AGCT	7 cut(s)	340, 605, 964, 1037, 1075, 1114, 1213
AluI	AGCT	7 cut(s)	340, 605, 964, 1037, 1075, 1114, 1213
Alw21I	GWGCWC	2 cut(s)	342, 512
Alw44I	GTGCAC	1 cut(s)	508
AlwI	GGATC	1 cut(s)	753
AoxI	GGCC	2 cut(s)	282, 482
ApaLI	GTGCAC	1 cut(s)	508
ApeKI	GCWGC	5 cut(s)	192, 264, 431, 797, 1111
ApoI	RAATTY	2 cut(s)	993, 1066
AspS9I	GGNCC	4 cut(s)	282, 351, 364, 450
AsuII	TTCGAA	1 cut(s)	149
AvaII	GGWCC	3 cut(s)	351, 364, 450
BaeGI	GKGCMC	1 cut(s)	512
BanII	GRGCYC	2 cut(s)	342, 551
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	2 cut(s)	342, 512
BbvI	GCAGC	5 cut(s)	204, 251, 418, 784, 1123
BccI	CCATC	4 cut(s)	536, 697, 966, 1138
BceAI	ACGGC	3 cut(s)	39, 53, 469
BfaI	CTAG	3 cut(s)	393, 602, 1115
BfmI	CTRYAG	1 cut(s)	1109
BisI	GCNGC	9 cut(s)	193, 265, 268, 271, 274, 432, 623, 798, 1112
BlsI	GCNGC	9 cut(s)	194, 266, 269, 272, 275, 433, 624, 799, 1113
Bme18I	GGWCC	3 cut(s)	351, 364, 450
BmgT120I	GGNCC	4 cut(s)	282, 351, 364, 450
BmiI	GGNNCC	4 cut(s)	283, 352, 365, 978
BmrI	ACTGGG	2 cut(s)	366, 943
BmsI	GCATC	1 cut(s)	870
BmuI	ACTGGG	2 cut(s)	366, 943
BpiI	GAAGAC	1 cut(s)	165
BpmI	CTGGAG	2 cut(s)	522, 1103
Bpu10I	CCTNAGC	1 cut(s)	900
Bpu14I	TTCGAA	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	790, 955
Bsa29I	ATCGAT	1 cut(s)	878
BsaHI	GRCGYC	1 cut(s)	380
BsaJI	CCNNGG	1 cut(s)	35
Bsc4I	CCNNNNNNNGG	4 cut(s)	360, 545, 742, 1166
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	3 cut(s)	133, 372, 938
BseCI	ATCGAT	1 cut(s)	878
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	2 cut(s)	502, 708
BseLI	CCNNNNNNNGG	4 cut(s)	360, 545, 742, 1166
BseMII	CTCAG	3 cut(s)	417, 630, 914
BseNI	ACTGG	3 cut(s)	133, 372, 938
BseRI	GAGGAG	1 cut(s)	1100
BseSI	GKGCMC	1 cut(s)	512
BseXI	GCAGC	5 cut(s)	204, 251, 418, 784, 1123
BshFI	GGCC	2 cut(s)	284, 484
BshVI	ATCGAT	1 cut(s)	878
BsiHKAI	GWGCWC	2 cut(s)	342, 512
BsiSI	CCGG	2 cut(s)	261, 329
BslFI	GGGAC	3 cut(s)	377, 425, 933
BslI	CCNNNNNNNGG	4 cut(s)	360, 545, 742, 1166
BsmFI	GGGAC	3 cut(s)	377, 425, 933
BsnI	GGCC	2 cut(s)	284, 484
Bsp119I	TTCGAA	1 cut(s)	149
Bsp1286I	GDGCHC	3 cut(s)	342, 512, 551
Bsp143I	GATC	2 cut(s)	115, 745
BspACI	CCGC	6 cut(s)	94, 267, 270, 273, 276, 622
BspANI	GGCC	2 cut(s)	284, 484
BspCNI	CTCAG	3 cut(s)	418, 631, 913
BspDI	ATCGAT	1 cut(s)	878
BspLI	GGNNCC	4 cut(s)	283, 352, 365, 978
BspMAI	CTGCAG	1 cut(s)	1113
BspPI	GGATC	1 cut(s)	753
BspQI	GCTCTTC	1 cut(s)	1027
BspT104I	TTCGAA	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	3 cut(s)	133, 372, 938
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	35
BssMI	GATC	2 cut(s)	115, 745
BssNI	GRCGYC	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	780
Bst6I	CTCTTC	1 cut(s)	1027
BstACI	GRCGYC	1 cut(s)	380
BstBI	TTCGAA	1 cut(s)	149
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	5 cut(s)	426, 639, 900, 1043, 1222
BstDSI	CCRYGG	1 cut(s)	35
BstENI	CCTNNNNNAGG	1 cut(s)	1164
BstF5I	GGATG	2 cut(s)	502, 708
BstKTI	GATC	2 cut(s)	118, 748
BstMBI	GATC	2 cut(s)	115, 745
BstMWI	GCNNNNNNNGC	8 cut(s)	102, 192, 229, 270, 273, 298, 437, 481
BstSFI	CTRYAG	1 cut(s)	1109
BstSLI	GKGCMC	1 cut(s)	512
BstV1I	GCAGC	5 cut(s)	204, 251, 418, 784, 1123
BstV2I	GAAGAC	1 cut(s)	165
BstXI	CCANNNNNNTGG	1 cut(s)	933
Bsu15I	ATCGAT	1 cut(s)	878
BsuRI	GGCC	2 cut(s)	284, 484
BsuTUI	ATCGAT	1 cut(s)	878
BtgI	CCRYGG	1 cut(s)	35
BtsCI	GGATG	2 cut(s)	502, 708
BtsIMutI	CAGTG	2 cut(s)	224, 379
Cac8I	GCNNGC	1 cut(s)	213
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	4 cut(s)	282, 351, 364, 450
ClaI	ATCGAT	1 cut(s)	878
Csp6I	GTAC	4 cut(s)	49, 733, 863, 905
CviAII	CATG	1 cut(s)	721
CviQI	GTAC	4 cut(s)	49, 733, 863, 905
DdeI	CTNAG	5 cut(s)	426, 639, 900, 1043, 1222
DpnI	GATC	2 cut(s)	117, 747
DpnII	GATC	2 cut(s)	115, 745
Eam1104I	CTCTTC	1 cut(s)	1027
EarI	CTCTTC	1 cut(s)	1027
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	2 cut(s)	342, 551
Eco32I	GATATC	1 cut(s)	1157
Eco47I	GGWCC	3 cut(s)	351, 364, 450
Eco53kI	GAGCTC	1 cut(s)	340
Eco57I	CTGAAG	4 cut(s)	248, 287, 422, 1003
EcoICRI	GAGCTC	1 cut(s)	340
EcoNI	CCTNNNNNAGG	1 cut(s)	1164
EcoO109I	RGGNCCY	1 cut(s)	282
EcoRV	GATATC	1 cut(s)	1157
EcoT38I	GRGCYC	2 cut(s)	342, 551
FaeI	CATG	1 cut(s)	724
FalI	AAGNNNNNCTT	6 cut(s)	191, 223, 326, 358, 496, 528
FaqI	GGGAC	3 cut(s)	377, 425, 933
FatI	CATG	1 cut(s)	720
FauNDI	CATATG	2 cut(s)	740, 859
Fnu4HI	GCNGC	9 cut(s)	193, 265, 268, 271, 274, 432, 623, 798, 1112
FokI	GGATG	2 cut(s)	509, 715
FriOI	GRGCYC	2 cut(s)	342, 551
Fsp4HI	GCNGC	9 cut(s)	193, 265, 268, 271, 274, 432, 623, 798, 1112
FspBI	CTAG	3 cut(s)	393, 602, 1115
GluI	GCNGC	9 cut(s)	193, 265, 268, 271, 274, 432, 623, 798, 1112
GsuI	CTGGAG	2 cut(s)	522, 1103
HaeIII	GGCC	2 cut(s)	284, 484
HapII	CCGG	2 cut(s)	261, 329
Hin1I	GRCGYC	1 cut(s)	380
Hin1II	CATG	1 cut(s)	724
HincII	GTYRAC	2 cut(s)	67, 645
HindII	GTYRAC	2 cut(s)	67, 645
HinfI	GANTC	4 cut(s)	235, 422, 1047, 1205
HpaI	GTTAAC	1 cut(s)	645
HpaII	CCGG	2 cut(s)	261, 329
Hpy166II	GTNNAC	5 cut(s)	67, 453, 510, 645, 776
Hpy188I	TCNGA	7 cut(s)	385, 402, 421, 427, 640, 685, 1022
Hpy188III	TCNNGA	2 cut(s)	539, 1082
Hpy8I	GTNNAC	5 cut(s)	67, 453, 510, 645, 776
Hpy99I	CGWCG	5 cut(s)	49, 116, 158, 301, 385
HpyAV	CCTTC	8 cut(s)	101, 328, 498, 520, 569, 579, 658, 1113
HpyCH4III	ACNGT	1 cut(s)	780
HpyCH4IV	ACGT	3 cut(s)	63, 380, 847
HpyCH4V	TGCA	7 cut(s)	15, 316, 510, 611, 883, 1111, 1185
HpyF10VI	GCNNNNNNNGC	8 cut(s)	102, 192, 229, 270, 273, 298, 437, 481
HpyF3I	CTNAG	5 cut(s)	426, 639, 900, 1043, 1222
HpySE526I	ACGT	3 cut(s)	63, 380, 847
Hsp92I	GRCGYC	1 cut(s)	380
Hsp92II	CATG	1 cut(s)	724
KspAI	GTTAAC	1 cut(s)	645
Kzo9I	GATC	2 cut(s)	115, 745
LguI	GCTCTTC	1 cut(s)	1027
LmnI	GCTCC	2 cut(s)	337, 439
Lsp1109I	GCAGC	5 cut(s)	204, 251, 418, 784, 1123
LweI	GCATC	1 cut(s)	870
MaeI	CTAG	3 cut(s)	393, 602, 1115
MaeII	ACGT	3 cut(s)	63, 380, 847
MaeIII	GTNAC	5 cut(s)	376, 486, 675, 706, 839
MalI	GATC	2 cut(s)	117, 747
MboI	GATC	2 cut(s)	115, 745
MboII	GAAGA	6 cut(s)	170, 229, 415, 435, 901, 1044
MhlI	GDGCHC	3 cut(s)	342, 512, 551
MluCI	AATT	5 cut(s)	52, 763, 819, 993, 1066
MmeI	TCCRAC	2 cut(s)	363, 993
MnlI	CCTC	6 cut(s)	68, 83, 304, 421, 931, 1078
MseI	TTAA	3 cut(s)	644, 915, 1062
MslI	CAYNNNNRTG	1 cut(s)	684
MspI	CCGG	2 cut(s)	261, 329
MwoI	GCNNNNNNNGC	8 cut(s)	102, 192, 229, 270, 273, 298, 437, 481
NdeI	CATATG	2 cut(s)	740, 859
NdeII	GATC	2 cut(s)	115, 745
NlaIII	CATG	1 cut(s)	724
NlaIV	GGNNCC	4 cut(s)	283, 352, 365, 978
NmuCI	GTSAC	2 cut(s)	376, 675
NspV	TTCGAA	1 cut(s)	149
PciSI	GCTCTTC	1 cut(s)	1027
PfeI	GAWTC	4 cut(s)	235, 422, 1047, 1205
PflMI	CCANNNNNTGG	1 cut(s)	360
PkrI	GCNGC	9 cut(s)	194, 266, 269, 272, 275, 433, 624, 799, 1113
Psp124BI	GAGCTC	1 cut(s)	342
PspN4I	GGNNCC	4 cut(s)	283, 352, 365, 978
PspPI	GGNCC	4 cut(s)	282, 351, 364, 450
PstI	CTGCAG	1 cut(s)	1113
RsaI	GTAC	4 cut(s)	50, 734, 864, 906
RsaNI	GTAC	4 cut(s)	49, 733, 863, 905
RseI	CAYNNNNRTG	1 cut(s)	684
SacI	GAGCTC	1 cut(s)	342
SapI	GCTCTTC	1 cut(s)	1027
SaqAI	TTAA	3 cut(s)	644, 915, 1062
SatI	GCNGC	9 cut(s)	193, 265, 268, 271, 274, 432, 623, 798, 1112
Sau3AI	GATC	2 cut(s)	115, 745
Sau96I	GGNCC	4 cut(s)	282, 351, 364, 450
SduI	GDGCHC	3 cut(s)	342, 512, 551
SfaNI	GCATC	1 cut(s)	870
SfcI	CTRYAG	1 cut(s)	1109
SfuI	TTCGAA	1 cut(s)	149
SinI	GGWCC	3 cut(s)	351, 364, 450
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	2 cut(s)	769, 970
SmoI	CTYRAG	2 cut(s)	769, 970
Sse9I	AATT	5 cut(s)	52, 763, 819, 993, 1066
SsiI	CCGC	6 cut(s)	94, 267, 270, 273, 276, 622
SspI	AATATT	1 cut(s)	672
SspMI	CTAG	3 cut(s)	393, 602, 1115
SstI	GAGCTC	1 cut(s)	342
TaaI	ACNGT	1 cut(s)	780
TaiI	ACGT	3 cut(s)	66, 383, 850
TaqI	TCGA	2 cut(s)	149, 878
TasI	AATT	5 cut(s)	52, 763, 819, 993, 1066
TauI	GCSGC	4 cut(s)	270, 273, 276, 625
TfiI	GAWTC	4 cut(s)	235, 422, 1047, 1205
Tru1I	TTAA	3 cut(s)	644, 915, 1062
Tru9I	TTAA	3 cut(s)	644, 915, 1062
TscAI	CASTG	2 cut(s)	231, 379
TseFI	GTSAC	2 cut(s)	376, 675
TseI	GCWGC	5 cut(s)	192, 264, 431, 797, 1111
Tsp45I	GTSAC	2 cut(s)	376, 675
TspDTI	ATGAA	2 cut(s)	588, 677
TspGWI	ACGGA	1 cut(s)	1107
TspRI	CASTG	2 cut(s)	231, 379
Van91I	CCANNNNNTGG	1 cut(s)	360
VneI	GTGCAC	1 cut(s)	508
VpaK11BI	GGWCC	3 cut(s)	351, 364, 450
XagI	CCTNNNNNAGG	1 cut(s)	1164
XapI	RAATTY	2 cut(s)	993, 1066
XspI	CTAG	3 cut(s)	393, 602, 1115
ZraI	GACGTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.