Rh2AG356100

Belongs to the TUB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0007280
Physical Location & Seq
Forward (+)
52506854 .. 52509825
2972 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG356100.1

Sequence Viewer

Length: 1200 bp
ATGCCACGGCAATCGTCGTACAATTCCCTCTACGTCAACCCCCTCAACGACCCAAAACACAACCGCAGTTCCAGCGAAGGCGACGATCATTCCAAACCAAACCAGTTGGCTTTGGCTTCGAACGACGAAGACAAAGAGAACGCAACGCCCAACAACAACAGTAGCGACAAGGAGAACTTGCTGGCGAAGAAGCCACTGAAGCAGAATCAACTGAACAAGTCTTTCTCCACCGGCTGCGGAGGCGGTGGTGGGGCCTTGAAGCCGTCGTCGCTTCAGTTCTGTATGCAGATGAGTGAGCCGGAGAAGGAGCTCTTTGGTGGGTCCAAGATGTGGGACCAGCCCAGTGTGACGTCGGACAACTCTAGTTCTCTGAAGATATGGGACTACTCGGATTCTGAGGCTGCTCCTGCTTCTTCTTGGTCCACTCTGCCTAACAAGTCTTTGCTGTGTAGGCCGTTACCTATGGATGTAGGAAGGTGCACTTGTGTTATAGTGAAGGAAAAATCTCCAGATGGGGGCTCTCTGTATTCTCTCTATACCAATGAAGGCAAGGGAAGGCAGGACAGGAAACTAGCTGTTGCAAACCATAAGCGGCGTAATGGAAAGTCTGAGTTAACTATTGCTCAAAATATGAAGGGAATATTGTCACATTCAGATGATAGTTTTATTGGGATGGTAACTGCTAATCTCATGGGTTCAAGGTACCACATATGGGATCAGGGGAAGCAACCAAATTGCTTGAGTAAACAGTCTAAATCACTTCTTGCTGCTGTATTATTCACACCCACAATTTCAACTTGGACAGGAAGTTACAGACGTATAAGGGCATATGTACCCAAGCACCAATCAATGCAGTTGAAGAATACTGCTCAGGTACAACACATTAAGGGACTGCCAACAGACTGGGAGGGGAAAATGGACAAAATCCATCAGCTATACTCAAGGGTTCCACTTTACAATAAAATTTCAAAGCAATACGAGTTGGACTTCAGAGATAGGGGAAGAGCTGGACTTAGAATCCAAAGTTCAGTTAAAAATTTCCAGCTGACTCTGGAGGAGAACGGAAAGCAGACAATCCTGCAGCTAGGAAGGGTTGGGAAGTCAAAATATGTGATGGATTACAGATATCCTTTGACAGGCTACCAAGCATTTTGCATTTGTCTGGCTTCTATTGATTCAAAGCTCTGTTGCTCAGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0005543 GO:0008289 GO:0035091 GO:0043167 GO:0043168
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tub

Protein Analysis

399

Amino Acids

44.53

Weight (kDa)

9.35

Isoelectric Point (pI)

44.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tub PF01167 149 - 393 2e-48 Tub family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 353
Acc65I GGTACC 1 cut(s) 702
AccB1I GGYRCC 1 cut(s) 702
AccB7I CCANNNNNTGG 1 cut(s) 330
AciI CCGC 4 cut(s) 64, 237, 243, 592
AclWI GGATC 1 cut(s) 723
AcsI RAATTY 2 cut(s) 963, 1036
AcuI CTGAAG 4 cut(s) 218, 257, 392, 973
AcyI GRCGYC 1 cut(s) 350
AfaI GTAC 4 cut(s) 20, 704, 834, 876
AfiI CCNNNNNNNGG 4 cut(s) 330, 515, 712, 1136
AgsI TTSAA 6 cut(s) 259, 699, 795, 859, 969, 1179
AluBI AGCT 7 cut(s) 310, 575, 934, 1007, 1045, 1084, 1183
AluI AGCT 7 cut(s) 310, 575, 934, 1007, 1045, 1084, 1183
Alw21I GWGCWC 2 cut(s) 312, 482
Alw44I GTGCAC 1 cut(s) 478
AlwI GGATC 1 cut(s) 723
AoxI GGCC 2 cut(s) 252, 452
ApaLI GTGCAC 1 cut(s) 478
ApeKI GCWGC 4 cut(s) 234, 401, 767, 1081
ApoI RAATTY 2 cut(s) 963, 1036
Asp718I GGTACC 1 cut(s) 702
AspS9I GGNCC 4 cut(s) 252, 321, 334, 420
AsuII TTCGAA 1 cut(s) 119
AvaII GGWCC 3 cut(s) 321, 334, 420
BaeGI GKGCMC 1 cut(s) 482
BanI GGYRCC 1 cut(s) 702
BanII GRGCYC 2 cut(s) 312, 521
BbsI GAAGAC 1 cut(s) 135
Bbv12I GWGCWC 2 cut(s) 312, 482
BbvI GCAGC 4 cut(s) 221, 388, 754, 1093
BccI CCATC 4 cut(s) 506, 667, 936, 1108
BceAI ACGGC 3 cut(s) 23, 247, 439
BfaI CTAG 3 cut(s) 363, 572, 1085
BfmI CTRYAG 1 cut(s) 1079
BisI GCNGC 5 cut(s) 235, 402, 593, 768, 1082
BlsI GCNGC 5 cut(s) 236, 403, 594, 769, 1083
Bme18I GGWCC 3 cut(s) 321, 334, 420
BmgT120I GGNCC 4 cut(s) 252, 321, 334, 420
BmiI GGNNCC 5 cut(s) 253, 322, 335, 704, 948
BmrI ACTGGG 2 cut(s) 336, 913
BmuI ACTGGG 2 cut(s) 336, 913
BpiI GAAGAC 1 cut(s) 135
BpmI CTGGAG 2 cut(s) 492, 1073
Bpu10I CCTNAGC 1 cut(s) 870
Bpu14I TTCGAA 1 cut(s) 119
BpuEI CTTGAG 2 cut(s) 760, 925
BsaHI GRCGYC 1 cut(s) 350
BsaJI CCNNGG 1 cut(s) 5
Bsc4I CCNNNNNNNGG 4 cut(s) 330, 515, 712, 1136
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 3 cut(s) 103, 342, 908
BseDI CCNNGG 1 cut(s) 5
BseGI GGATG 2 cut(s) 472, 678
BseLI CCNNNNNNNGG 4 cut(s) 330, 515, 712, 1136
BseMII CTCAG 3 cut(s) 387, 600, 884
BseNI ACTGG 3 cut(s) 103, 342, 908
BseRI GAGGAG 1 cut(s) 1070
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 4 cut(s) 221, 388, 754, 1093
BshFI GGCC 2 cut(s) 254, 454
BshNI GGYRCC 1 cut(s) 702
BsiHKAI GWGCWC 2 cut(s) 312, 482
BsiSI CCGG 2 cut(s) 231, 299
BslFI GGGAC 3 cut(s) 347, 395, 903
BslI CCNNNNNNNGG 4 cut(s) 330, 515, 712, 1136
BsmFI GGGAC 3 cut(s) 347, 395, 903
BsnI GGCC 2 cut(s) 254, 454
Bsp119I TTCGAA 1 cut(s) 119
Bsp1286I GDGCHC 3 cut(s) 312, 482, 521
Bsp143I GATC 2 cut(s) 85, 715
BspACI CCGC 4 cut(s) 64, 237, 243, 592
BspANI GGCC 2 cut(s) 254, 454
BspCNI CTCAG 3 cut(s) 388, 601, 883
BspLI GGNNCC 5 cut(s) 253, 322, 335, 704, 948
BspMAI CTGCAG 1 cut(s) 1083
BspPI GGATC 1 cut(s) 723
BspQI GCTCTTC 1 cut(s) 997
BspT104I TTCGAA 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 702
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 3 cut(s) 103, 342, 908
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 5
BssMI GATC 2 cut(s) 85, 715
BssNI GRCGYC 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 161, 750
Bst6I CTCTTC 1 cut(s) 997
BstACI GRCGYC 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 119
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 5 cut(s) 396, 609, 870, 1013, 1192
BstDSI CCRYGG 1 cut(s) 5
BstENI CCTNNNNNAGG 1 cut(s) 1134
BstF5I GGATG 2 cut(s) 472, 678
BstKTI GATC 2 cut(s) 88, 718
BstMBI GATC 2 cut(s) 85, 715
BstMWI GCNNNNNNNGC 6 cut(s) 72, 199, 240, 268, 407, 451
BstSFI CTRYAG 1 cut(s) 1079
BstSLI GKGCMC 1 cut(s) 482
BstV1I GCAGC 4 cut(s) 221, 388, 754, 1093
BstV2I GAAGAC 1 cut(s) 135
BstXI CCANNNNNNTGG 1 cut(s) 903
BsuRI GGCC 2 cut(s) 254, 454
BtgI CCRYGG 1 cut(s) 5
BtsCI GGATG 2 cut(s) 472, 678
BtsIMutI CAGTG 2 cut(s) 194, 349
Cac8I GCNNGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 4 cut(s) 252, 321, 334, 420
Csp6I GTAC 4 cut(s) 19, 703, 833, 875
CviAII CATG 1 cut(s) 691
CviQI GTAC 4 cut(s) 19, 703, 833, 875
DdeI CTNAG 5 cut(s) 396, 609, 870, 1013, 1192
DpnI GATC 2 cut(s) 87, 717
DpnII GATC 2 cut(s) 85, 715
Eam1104I CTCTTC 1 cut(s) 997
EarI CTCTTC 1 cut(s) 997
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 2 cut(s) 312, 521
Eco32I GATATC 1 cut(s) 1127
Eco47I GGWCC 3 cut(s) 321, 334, 420
Eco53kI GAGCTC 1 cut(s) 310
Eco57I CTGAAG 4 cut(s) 218, 257, 392, 973
EcoICRI GAGCTC 1 cut(s) 310
EcoNI CCTNNNNNAGG 1 cut(s) 1134
EcoO109I RGGNCCY 1 cut(s) 252
EcoRV GATATC 1 cut(s) 1127
EcoT38I GRGCYC 2 cut(s) 312, 521
FaeI CATG 1 cut(s) 694
FalI AAGNNNNNCTT 6 cut(s) 161, 193, 296, 328, 466, 498
FaqI GGGAC 3 cut(s) 347, 395, 903
FatI CATG 1 cut(s) 690
FauNDI CATATG 2 cut(s) 710, 829
Fnu4HI GCNGC 5 cut(s) 235, 402, 593, 768, 1082
FokI GGATG 2 cut(s) 479, 685
FriOI GRGCYC 2 cut(s) 312, 521
Fsp4HI GCNGC 5 cut(s) 235, 402, 593, 768, 1082
FspBI CTAG 3 cut(s) 363, 572, 1085
GluI GCNGC 5 cut(s) 235, 402, 593, 768, 1082
GsuI CTGGAG 2 cut(s) 492, 1073
HaeIII GGCC 2 cut(s) 254, 454
HapII CCGG 2 cut(s) 231, 299
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 1 cut(s) 694
HincII GTYRAC 2 cut(s) 37, 615
HindII GTYRAC 2 cut(s) 37, 615
HinfI GANTC 5 cut(s) 205, 392, 1017, 1048, 1175
HpaI GTTAAC 1 cut(s) 615
HpaII CCGG 2 cut(s) 231, 299
Hpy166II GTNNAC 5 cut(s) 37, 423, 480, 615, 746
Hpy188I TCNGA 7 cut(s) 355, 372, 391, 397, 610, 655, 992
Hpy188III TCNNGA 2 cut(s) 509, 1052
Hpy8I GTNNAC 5 cut(s) 37, 423, 480, 615, 746
Hpy99I CGWCG 6 cut(s) 19, 86, 128, 268, 271, 355
HpyAV CCTTC 8 cut(s) 71, 298, 468, 490, 539, 549, 628, 1083
HpyCH4III ACNGT 2 cut(s) 161, 750
HpyCH4IV ACGT 3 cut(s) 33, 350, 817
HpyCH4V TGCA 6 cut(s) 286, 480, 581, 853, 1081, 1155
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 199, 240, 268, 407, 451
HpyF3I CTNAG 5 cut(s) 396, 609, 870, 1013, 1192
HpySE526I ACGT 3 cut(s) 33, 350, 817
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 1 cut(s) 694
KpnI GGTACC 1 cut(s) 706
KspAI GTTAAC 1 cut(s) 615
Kzo9I GATC 2 cut(s) 85, 715
LguI GCTCTTC 1 cut(s) 997
LmnI GCTCC 2 cut(s) 307, 409
Lsp1109I GCAGC 4 cut(s) 221, 388, 754, 1093
MaeI CTAG 3 cut(s) 363, 572, 1085
MaeII ACGT 3 cut(s) 33, 350, 817
MaeIII GTNAC 5 cut(s) 346, 456, 645, 676, 809
MalI GATC 2 cut(s) 87, 717
MboI GATC 2 cut(s) 85, 715
MboII GAAGA 6 cut(s) 140, 199, 385, 405, 871, 1014
MhlI GDGCHC 3 cut(s) 312, 482, 521
MluCI AATT 5 cut(s) 22, 733, 789, 963, 1036
MlyI GAGTC 1 cut(s) 1042
MmeI TCCRAC 2 cut(s) 333, 963
MnlI CCTC 6 cut(s) 38, 53, 233, 391, 901, 1048
MseI TTAA 3 cut(s) 614, 885, 1032
MslI CAYNNNNRTG 1 cut(s) 654
MspA1I CMGCKG 1 cut(s) 1045
MspI CCGG 2 cut(s) 231, 299
MwoI GCNNNNNNNGC 6 cut(s) 72, 199, 240, 268, 407, 451
NdeI CATATG 2 cut(s) 710, 829
NdeII GATC 2 cut(s) 85, 715
NlaIII CATG 1 cut(s) 694
NlaIV GGNNCC 5 cut(s) 253, 322, 335, 704, 948
NmuCI GTSAC 2 cut(s) 346, 645
NspV TTCGAA 1 cut(s) 119
PciSI GCTCTTC 1 cut(s) 997
PfeI GAWTC 4 cut(s) 205, 392, 1017, 1175
PflMI CCANNNNNTGG 1 cut(s) 330
PkrI GCNGC 5 cut(s) 236, 403, 594, 769, 1083
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
Psp124BI GAGCTC 1 cut(s) 312
PspN4I GGNNCC 5 cut(s) 253, 322, 335, 704, 948
PspPI GGNCC 4 cut(s) 252, 321, 334, 420
PstI CTGCAG 1 cut(s) 1083
PvuII CAGCTG 1 cut(s) 1045
RsaI GTAC 4 cut(s) 20, 704, 834, 876
RsaNI GTAC 4 cut(s) 19, 703, 833, 875
RseI CAYNNNNRTG 1 cut(s) 654
SacI GAGCTC 1 cut(s) 312
SapI GCTCTTC 1 cut(s) 997
SaqAI TTAA 3 cut(s) 614, 885, 1032
SatI GCNGC 5 cut(s) 235, 402, 593, 768, 1082
Sau3AI GATC 2 cut(s) 85, 715
Sau96I GGNCC 4 cut(s) 252, 321, 334, 420
SchI GAGTC 1 cut(s) 1042
SduI GDGCHC 3 cut(s) 312, 482, 521
SfcI CTRYAG 1 cut(s) 1079
SfuI TTCGAA 1 cut(s) 119
SinI GGWCC 3 cut(s) 321, 334, 420
SmiMI CAYNNNNRTG 1 cut(s) 654
SmlI CTYRAG 2 cut(s) 739, 940
SmoI CTYRAG 2 cut(s) 739, 940
Sse9I AATT 5 cut(s) 22, 733, 789, 963, 1036
SsiI CCGC 4 cut(s) 64, 237, 243, 592
SspI AATATT 1 cut(s) 642
SspMI CTAG 3 cut(s) 363, 572, 1085
SstI GAGCTC 1 cut(s) 312
TaaI ACNGT 2 cut(s) 161, 750
TaiI ACGT 3 cut(s) 36, 353, 820
TaqI TCGA 1 cut(s) 119
TasI AATT 5 cut(s) 22, 733, 789, 963, 1036
TauI GCSGC 1 cut(s) 595
TfiI GAWTC 4 cut(s) 205, 392, 1017, 1175
Tru1I TTAA 3 cut(s) 614, 885, 1032
Tru9I TTAA 3 cut(s) 614, 885, 1032
TscAI CASTG 2 cut(s) 201, 349
TseFI GTSAC 2 cut(s) 346, 645
TseI GCWGC 4 cut(s) 234, 401, 767, 1081
Tsp45I GTSAC 2 cut(s) 346, 645
TspDTI ATGAA 2 cut(s) 558, 647
TspGWI ACGGA 1 cut(s) 1077
TspRI CASTG 2 cut(s) 201, 349
Van91I CCANNNNNTGG 1 cut(s) 330
VneI GTGCAC 1 cut(s) 478
VpaK11BI GGWCC 3 cut(s) 321, 334, 420
XagI CCTNNNNNAGG 1 cut(s) 1134
XapI RAATTY 2 cut(s) 963, 1036
XspI CTAG 3 cut(s) 363, 572, 1085
ZraI GACGTC 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.