AT1G16910

lsh7 lsh7 (light sensitive hypocotyls 7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010649
Physical Location & Seq
Forward (+)
5785003 .. 5785959
957 bp
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UTR
Exon/CDS
Intron
AT1G16910.1

Sequence Viewer

Length: 495 bp
ATGACGAGTACAAACACGAGAAACAAAGGCAAATGCATAGTAGAAGGACCACCACCGACTCTAAGCCGTTATGAGTCACAAAAAAGCCGCGACTGGAACACGTTTTGCCAGTATCTCATGACCAAGATGCCACCAGTTCACGTATGGGAGTGTGAATCAAACCACATCCTCGATTTCCTCCAAAGTCGTGACCAGTTTGGTAAAACAAAAGTTCATATCCAAGGATGCGTTTTCTTCGGACAGAAAGAGCCACCAGGAGAGTGTAACTGCCCGTTGAAACAGGCGTGGGGAAGCTTAGATGCTTTGATCGGACGGCTGAGAGCAGCTTACGAGGAGAACGGTGGCTTAACGGAGAAAAACCCGTTTGCCCGGGGAGGGATTAGGATTTTTCTGAGGGAAGTGAGAGGTTCACAGGCGAAGGCGAGAGGAGTTTTGTACAAAAAAAAGAAGCGTCTTGTAGTTGTTGGTACGGGAACTAGTACTACTTGGACTTAA

Protein Analysis

164

Amino Acids

18.52

Weight (kDa)

9.69

Isoelectric Point (pI)

45.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 15 - 135 2.6e-62 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16910 AT1G78815
fragaria_vesca FvH4_3g18340 FvH4_3g18340
malus_domestica MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis pycom03g18980 pycom11g23180
rosa_chinensis RchiOBHm_Chr5g0030991
rosa_laevigata RLG00000033279
rosa_multiflora Rmu_sc0001974.1_g000001
rosa_roxburghii Rroxscaffold_1G00049260
rosa_rugosa Rorug05G0122100
rosa_samantha Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana Rw5G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 90
AciI CCGC 1 cut(s) 88
AfaI GTAC 4 cut(s) 10, 437, 469, 481
AfiI CCNNNNNNNGG 1 cut(s) 375
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 1 cut(s) 277
AhlI ACTAGT 1 cut(s) 476
AjnI CCWGG 1 cut(s) 253
AluBI AGCT 2 cut(s) 294, 326
AluI AGCT 2 cut(s) 294, 326
Ama87I CYCGRG 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 323
AspS9I GGNCC 1 cut(s) 47
AsuC2I CCSGG 2 cut(s) 370, 371
AvaI CYCGRG 1 cut(s) 369
AvaII GGWCC 1 cut(s) 47
BauI CACGAG 1 cut(s) 16
BbvI GCAGC 1 cut(s) 335
BceAI ACGGC 2 cut(s) 51, 329
BciT130I CCWGG 1 cut(s) 255
BcnI CCSGG 2 cut(s) 370, 371
BcuI ACTAGT 1 cut(s) 476
BfaI CTAG 1 cut(s) 477
BisI GCNGC 2 cut(s) 88, 324
BlsI GCNGC 2 cut(s) 89, 325
BmcAI AGTACT 1 cut(s) 481
Bme1390I CCNGG 3 cut(s) 255, 370, 371
Bme18I GGWCC 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 369
BmgT120I GGNCC 1 cut(s) 47
BmrFI CCNGG 3 cut(s) 255, 370, 371
BmsI GCATC 3 cut(s) 117, 215, 289
BpuMI CCSGG 2 cut(s) 370, 371
BsaAI YACGTR 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 220, 369, 370
Bsc4I CCNNNNNNNGG 1 cut(s) 375
Bse1I ACTGG 4 cut(s) 98, 109, 134, 193
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 3 cut(s) 220, 369, 370
BseGI GGATG 2 cut(s) 165, 230
BseLI CCNNNNNNNGG 1 cut(s) 375
BseMII CTCAG 2 cut(s) 308, 383
BseNI ACTGG 4 cut(s) 98, 109, 134, 193
BseRI GAGGAG 2 cut(s) 347, 441
BseXI GCAGC 1 cut(s) 335
Bsh1236I CGCG 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 369
BsiSI CCGG 1 cut(s) 370
BslI CCNNNNNNNGG 1 cut(s) 375
BsoBI CYCGRG 1 cut(s) 369
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 1 cut(s) 306
BspACI CCGC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 309, 384
BspFNI CGCG 1 cut(s) 90
BspHI TCATGA 1 cut(s) 117
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 4 cut(s) 98, 109, 134, 193
BssECI CCNNGG 3 cut(s) 220, 369, 370
BssMI GATC 1 cut(s) 306
BssSI CACGAG 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 220
Bst2BI CACGAG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 1 cut(s) 341
BstAUI TGTACA 1 cut(s) 435
BstBAI YACGTR 1 cut(s) 142
BstDEI CTNAG 4 cut(s) 62, 295, 317, 392
BstF5I GGATG 2 cut(s) 165, 230
BstFNI CGCG 1 cut(s) 90
BstKTI GATC 1 cut(s) 309
BstMBI GATC 1 cut(s) 306
BstNI CCWGG 1 cut(s) 255
BstSCI CCNGG 3 cut(s) 253, 368, 369
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 335
BtsCI GGATG 2 cut(s) 165, 230
CciI TCATGA 1 cut(s) 117
Cfr13I GGNCC 1 cut(s) 47
Cfr9I CCCGGG 1 cut(s) 369
CseI GACGC 1 cut(s) 440
Csp6I GTAC 4 cut(s) 9, 436, 468, 480
CviAII CATG 1 cut(s) 118
CviJI RGCY 7 cut(s) 66, 87, 250, 294, 316, 326, 345
CviKI_1 RGCY 7 cut(s) 66, 87, 250, 294, 316, 326, 345
CviQI GTAC 4 cut(s) 9, 436, 468, 480
DdeI CTNAG 4 cut(s) 62, 295, 317, 392
DpnI GATC 1 cut(s) 308
DpnII GATC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 47
Eco88I CYCGRG 1 cut(s) 369
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 220
FaeI CATG 1 cut(s) 121
FaiI YATR 5 cut(s) 38, 72, 119, 145, 216
FatI CATG 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 88, 324
FokI GGATG 2 cut(s) 152, 237
Fsp4HI GCNGC 2 cut(s) 88, 324
FspBI CTAG 1 cut(s) 477
GluI GCNGC 2 cut(s) 88, 324
HapII CCGG 1 cut(s) 370
HgaI GACGC 1 cut(s) 440
Hin1II CATG 1 cut(s) 121
HindIII AAGCTT 1 cut(s) 292
HinfI GANTC 3 cut(s) 58, 74, 155
HpaII CCGG 1 cut(s) 370
Hpy166II GTNNAC 2 cut(s) 139, 410
Hpy188I TCNGA 3 cut(s) 239, 311, 393
Hpy188III TCNNGA 2 cut(s) 118, 188
Hpy8I GTNNAC 2 cut(s) 139, 410
HpyAV CCTTC 2 cut(s) 38, 412
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 2 cut(s) 101, 141
HpyCH4V TGCA 1 cut(s) 36
HpyF3I CTNAG 4 cut(s) 62, 295, 317, 392
HpySE526I ACGT 2 cut(s) 101, 141
Hsp92II CATG 1 cut(s) 121
Kzo9I GATC 1 cut(s) 306
LpnPI CCDG 9 cut(s) 79, 122, 147, 206, 240, 266, 267, 383, 398
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 3 cut(s) 117, 215, 289
MaeI CTAG 1 cut(s) 477
MaeII ACGT 2 cut(s) 101, 141
MaeIII GTNAC 3 cut(s) 75, 188, 263
MalI GATC 1 cut(s) 308
MboI GATC 1 cut(s) 306
MboII GAAGA 1 cut(s) 226
MlyI GAGTC 2 cut(s) 52, 83
MnlI CCTC 7 cut(s) 179, 188, 325, 368, 387, 398, 419
Mph1103I ATGCAT 1 cut(s) 38
MseI TTAA 2 cut(s) 347, 493
MspI CCGG 1 cut(s) 370
MspR9I CCNGG 3 cut(s) 255, 370, 371
MvaI CCWGG 1 cut(s) 255
MvnI CGCG 1 cut(s) 90
NciI CCSGG 2 cut(s) 370, 371
NdeII GATC 1 cut(s) 306
NlaIII CATG 1 cut(s) 121
NmuCI GTSAC 2 cut(s) 75, 188
NsiI ATGCAT 1 cut(s) 38
PagI TCATGA 1 cut(s) 117
PfeI GAWTC 1 cut(s) 155
PkrI GCNGC 2 cut(s) 89, 325
PleI GAGTC 2 cut(s) 52, 82
PpsI GAGTC 2 cut(s) 52, 82
Ppu21I YACGTR 1 cut(s) 142
Psp6I CCWGG 1 cut(s) 253
PspGI CCWGG 1 cut(s) 253
PspPI GGNCC 1 cut(s) 47
PsrI GAACNNNNNNTAC 1 cut(s) 466
RsaI GTAC 4 cut(s) 10, 437, 469, 481
RsaNI GTAC 4 cut(s) 9, 436, 468, 480
SaqAI TTAA 2 cut(s) 347, 493
SatI GCNGC 2 cut(s) 88, 324
Sau3AI GATC 1 cut(s) 306
Sau96I GGNCC 1 cut(s) 47
ScaI AGTACT 1 cut(s) 481
SchI GAGTC 2 cut(s) 52, 83
ScrFI CCNGG 3 cut(s) 255, 370, 371
SetI ASST 5 cut(s) 104, 144, 296, 328, 409
SfaNI GCATC 3 cut(s) 117, 215, 289
SinI GGWCC 1 cut(s) 47
SmaI CCCGGG 1 cut(s) 371
SpeI ACTAGT 1 cut(s) 476
SsiI CCGC 1 cut(s) 88
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 3 cut(s) 253, 368, 369
StyI CCWWGG 1 cut(s) 220
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 2 cut(s) 104, 144
TaqI TCGA 1 cut(s) 171
TatI WGTACW 3 cut(s) 8, 435, 479
TauI GCSGC 1 cut(s) 90
TfiI GAWTC 1 cut(s) 155
Tru1I TTAA 2 cut(s) 347, 493
Tru9I TTAA 2 cut(s) 347, 493
TseFI GTSAC 2 cut(s) 75, 188
TseI GCWGC 1 cut(s) 323
Tsp45I GTSAC 2 cut(s) 75, 188
TspDTI ATGAA 1 cut(s) 203
TspGWI ACGGA 1 cut(s) 365
TspMI CCCGGG 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XmaI CCCGGG 1 cut(s) 369
XspI CTAG 1 cut(s) 477
ZrmI AGTACT 1 cut(s) 481
Zsp2I ATGCAT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.