AT1G78815

lsh7 lsh7 (light sensitive hypocotyls 7)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010649
Physical Location & Seq
Reverse (-)
29631743 .. 29632791
1049 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78815.1

Sequence Viewer

Length: 588 bp
ATGGCTAGTCATAGCAACAAAGGCAAAGGCATAGCAGAAGGATCGTCTCAACCGCAATCGCAACCGCAACCACAACCACACCAACCGCAATCACCTCCTAACCCGCCAGCGTTAAGCCGGTACGAGTCACAGAAACGACGAGACTGGAACACGTTTTGTCAATACCTGCGTAACCAACAGCCACCGGTTCACATCTCGCAGTGTGGATCAAACCACATCCTCGATTTCCTCCAATATCTCGACCAGTTTGGGAAGACAAAGGTTCATATCCATGGATGCGTTTTCTTCGGACAGGTTGAGCCAGCGGGACAGTGTAACTGTCCTTTAAAACAAGCGTGGGGGAGTTTAGATGCTTTGATCGGACGGCTAAGAGCGGCTTTCGAGGAGAACGGAGGATTGCCGGAGAGAAACCCTTTTGCCGGCGGCGGAATTAGGGTTTTTCTGAGGGAAGTGAGAGATTCACAGGCGAAGGCAAGAGGAGTTCCGTACAAGAAAAGAAAAAAGAGGAAGAAGAGGAATCCTATGAAGAGTCATGATGGTGAAGATGGTACTACGGGAACTAGTAGTAGCTCCAACTTGGCTTCTTAG

Protein Analysis

195

Amino Acids

21.62

Weight (kDa)

9.86

Isoelectric Point (pI)

71.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 29 - 153 1.1e-64 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16910 AT1G78815
fragaria_vesca FvH4_3g18340 FvH4_3g18340
malus_domestica MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis pycom03g18980 pycom11g23180
rosa_chinensis RchiOBHm_Chr5g0030991
rosa_laevigata RLG00000033279
rosa_multiflora Rmu_sc0001974.1_g000001
rosa_roxburghii Rroxscaffold_1G00049260
rosa_rugosa Rorug05G0122100
rosa_samantha Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana Rw5G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 174
AccBSI CCGCTC 1 cut(s) 374
AciI CCGC 8 cut(s) 53, 65, 86, 104, 305, 374, 423, 426
AclWI GGATC 2 cut(s) 49, 214
AfaI GTAC 3 cut(s) 122, 488, 550
AfiI CCNNNNNNNGG 1 cut(s) 419
AflIII ACRYGT 1 cut(s) 150
AgeI ACCGGT 1 cut(s) 184
AhlI ACTAGT 1 cut(s) 560
AluBI AGCT 1 cut(s) 570
AluI AGCT 1 cut(s) 570
Alw26I GTCTC 2 cut(s) 51, 135
AlwI GGATC 2 cut(s) 49, 214
AsiGI ACCGGT 1 cut(s) 184
AsuHPI GGTGA 2 cut(s) 84, 551
BbsI GAAGAC 1 cut(s) 260
BccI CCATC 2 cut(s) 530, 539
BceAI ACGGC 1 cut(s) 380
BcgI CGANNNNNNTGC 2 cut(s) 24, 58
BcoDI GTCTC 2 cut(s) 51, 135
BcuI ACTAGT 1 cut(s) 560
BfaI CTAG 2 cut(s) 6, 561
BfuAI ACCTGC 1 cut(s) 174
BisI GCNGC 2 cut(s) 375, 424
BlsI GCNGC 2 cut(s) 376, 425
BmsI GCATC 2 cut(s) 266, 340
BpiI GAAGAC 1 cut(s) 260
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 184
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse118I RCCGGY 3 cut(s) 117, 184, 419
Bse1I ACTGG 2 cut(s) 149, 244
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 2 cut(s) 216, 281
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 2 cut(s) 149, 244
BseRI GAGGAG 2 cut(s) 398, 492
BshTI ACCGGT 1 cut(s) 184
BsiSI CCGG 4 cut(s) 118, 185, 401, 420
BslFI GGGAC 1 cut(s) 321
BslI CCNNNNNNNGG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 51, 135
BsmBI CGTCTC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 321
Bsp143I GATC 3 cut(s) 41, 206, 357
Bsp19I CCATGG 1 cut(s) 271
BspACI CCGC 8 cut(s) 53, 65, 86, 104, 305, 374, 423, 426
BspCNI CTCAG 1 cut(s) 435
BspHI TCATGA 1 cut(s) 532
BspMI ACCTGC 1 cut(s) 174
BspPI GGATC 2 cut(s) 49, 214
BsrBI CCGCTC 1 cut(s) 374
BsrFI RCCGGY 3 cut(s) 117, 184, 419
BsrI ACTGG 2 cut(s) 149, 244
BssAI RCCGGY 3 cut(s) 117, 184, 419
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 3 cut(s) 41, 206, 357
BssT1I CCWWGG 1 cut(s) 271
Bst4CI ACNGT 2 cut(s) 312, 320
Bst6I CTCTTC 2 cut(s) 506, 521
BstC8I GCNNGC 3 cut(s) 108, 303, 421
BstDEI CTNAG 3 cut(s) 368, 443, 585
BstDSI CCRYGG 1 cut(s) 271
BstF5I GGATG 2 cut(s) 216, 281
BstKTI GATC 3 cut(s) 44, 209, 360
BstMAI GTCTC 2 cut(s) 51, 135
BstMBI GATC 3 cut(s) 41, 206, 357
BstMWI GCNNNNNNNGC 1 cut(s) 21
BstV2I GAAGAC 1 cut(s) 260
BtgI CCRYGG 1 cut(s) 271
BtsCI GGATG 2 cut(s) 216, 281
BtsI GCAGTG 1 cut(s) 206
BtsIMutI CAGTG 2 cut(s) 206, 317
BveI ACCTGC 1 cut(s) 174
Cac8I GCNNGC 3 cut(s) 108, 303, 421
CciI TCATGA 1 cut(s) 532
Cfr10I RCCGGY 3 cut(s) 117, 184, 419
Csp6I GTAC 3 cut(s) 121, 487, 549
CspAI ACCGGT 1 cut(s) 184
CviAII CATG 2 cut(s) 272, 533
CviJI RGCY 8 cut(s) 5, 117, 181, 301, 367, 377, 570, 581
CviKI_1 RGCY 8 cut(s) 5, 117, 181, 301, 367, 377, 570, 581
CviQI GTAC 3 cut(s) 121, 487, 549
DdeI CTNAG 3 cut(s) 368, 443, 585
DpnI GATC 3 cut(s) 43, 208, 359
DpnII GATC 3 cut(s) 41, 206, 357
DraI TTTAAA 1 cut(s) 327
Eam1104I CTCTTC 2 cut(s) 506, 521
EarI CTCTTC 2 cut(s) 506, 521
EciI GGCGGA 1 cut(s) 441
Eco130I CCWWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 271
ErhI CCWWGG 1 cut(s) 271
Esp3I CGTCTC 1 cut(s) 51
FaeI CATG 2 cut(s) 275, 536
FaiI YATR 6 cut(s) 12, 32, 267, 273, 524, 534
FalI AAGNNNNNCTT 2 cut(s) 361, 393
FaqI GGGAC 1 cut(s) 321
FatI CATG 2 cut(s) 271, 532
FauI CCCGC 2 cut(s) 111, 298
Fnu4HI GCNGC 2 cut(s) 375, 424
FokI GGATG 2 cut(s) 203, 288
Fsp4HI GCNGC 2 cut(s) 375, 424
FspBI CTAG 2 cut(s) 6, 561
GluI GCNGC 2 cut(s) 375, 424
HapII CCGG 4 cut(s) 118, 185, 401, 420
Hin1II CATG 2 cut(s) 275, 536
HinfI GANTC 4 cut(s) 125, 458, 517, 529
HpaII CCGG 4 cut(s) 118, 185, 401, 420
HphI GGTGA 2 cut(s) 84, 551
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 290, 362, 444
Hpy188III TCNNGA 2 cut(s) 239, 533
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 32, 463
HpyCH4III ACNGT 2 cut(s) 312, 320
HpyCH4IV ACGT 1 cut(s) 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 21
HpyF3I CTNAG 3 cut(s) 368, 443, 585
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 2 cut(s) 275, 536
KroI GCCGGC 1 cut(s) 419
KroNI GCCGGC 1 cut(s) 421
Kzo9I GATC 3 cut(s) 41, 206, 357
LmnI GCTCC 1 cut(s) 575
LweI GCATC 2 cut(s) 266, 340
MaeI CTAG 2 cut(s) 6, 561
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 3 cut(s) 126, 170, 314
MalI GATC 3 cut(s) 43, 208, 359
MbiI CCGCTC 1 cut(s) 374
MboI GATC 3 cut(s) 41, 206, 357
MboII GAAGA 6 cut(s) 265, 277, 520, 523, 538, 554
MluCI AATT 1 cut(s) 429
MlyI GAGTC 2 cut(s) 134, 538
MnlI CCTC 9 cut(s) 105, 230, 239, 376, 386, 438, 470, 498, 507
MroNI GCCGGC 1 cut(s) 419
MseI TTAA 2 cut(s) 113, 326
MslI CAYNNNNRTG 2 cut(s) 270, 537
MspA1I CMGCKG 1 cut(s) 305
MspI CCGG 4 cut(s) 118, 185, 401, 420
MwoI GCNNNNNNNGC 1 cut(s) 21
NaeI GCCGGC 1 cut(s) 421
NcoI CCATGG 1 cut(s) 271
NdeII GATC 3 cut(s) 41, 206, 357
NgoMIV GCCGGC 1 cut(s) 419
NlaIII CATG 2 cut(s) 275, 536
NmuCI GTSAC 1 cut(s) 126
PagI TCATGA 1 cut(s) 532
PdiI GCCGGC 1 cut(s) 421
PfeI GAWTC 2 cut(s) 458, 517
PinAI ACCGGT 1 cut(s) 184
PkrI GCNGC 2 cut(s) 376, 425
PleI GAGTC 2 cut(s) 133, 537
PpsI GAGTC 2 cut(s) 133, 537
RsaI GTAC 3 cut(s) 122, 488, 550
RsaNI GTAC 3 cut(s) 121, 487, 549
RseI CAYNNNNRTG 2 cut(s) 270, 537
SaqAI TTAA 2 cut(s) 113, 326
SatI GCNGC 2 cut(s) 375, 424
Sau3AI GATC 3 cut(s) 41, 206, 357
SchI GAGTC 2 cut(s) 134, 538
SetI ASST 6 cut(s) 97, 155, 168, 264, 297, 572
SfaNI GCATC 2 cut(s) 266, 340
SmiMI CAYNNNNRTG 2 cut(s) 270, 537
SpeI ACTAGT 1 cut(s) 560
Sse9I AATT 1 cut(s) 429
SsiI CCGC 8 cut(s) 53, 65, 86, 104, 305, 374, 423, 426
SspMI CTAG 2 cut(s) 6, 561
StyI CCWWGG 1 cut(s) 271
TaaI ACNGT 2 cut(s) 312, 320
TaiI ACGT 1 cut(s) 155
TaqI TCGA 3 cut(s) 222, 240, 381
TasI AATT 1 cut(s) 429
TauI GCSGC 2 cut(s) 377, 426
TfiI GAWTC 2 cut(s) 458, 517
Tru1I TTAA 2 cut(s) 113, 326
Tru9I TTAA 2 cut(s) 113, 326
TscAI CASTG 2 cut(s) 206, 317
TseFI GTSAC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 254, 539
TspGWI ACGGA 2 cut(s) 405, 474
TspRI CASTG 2 cut(s) 206, 317
XspI CTAG 2 cut(s) 6, 561
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.