MD11G1263200.v1.1

Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0010649
Physical Location & Seq
Forward (+)
37825973 .. 37829543
3571 bp
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UTR
Exon/CDS
Intron
MD11G1263200.v1.1.491

Sequence Viewer

Length: 552 bp
ATGTTTACCAACAAAGGAAAAGATGTAGTGGAAGGATCGTCGTCTGCTTCTGCTACTGATCATCGGCAACAGAAGCAAGCTTCGCAGCCGGCTCCACTGAGCCGGTATGAATCGCAGAAGAGGCGAGATTGGAACACTTTTGGGCAGTACTTGAGAAACCAGAGGCCTCCAGTTGCTCTCTCACAGAGCAACTCCAACCATGTTCTTGATTTCCTCAGGTACTTGGACCAATTTGGAAAGACTAAGGTGCACTTACAAGGGTGTGTGTTTTTTGGGCAGCCTGAGCCTCCTGGCCCTTGCACCTGTCCGCTAAGACAAGCTTGGGGCAGCCTTGATGCACTGATCGGACGGCTGAGAGCTGCTTATGAAGAAAATGGTGGGTTGCCAGAAACAAACCCATTTGCAAGTGGAGCTATAAGAGTCTATCTGCGTGAAGTGAGGGACTCTCAAGCCAAAGCTCGGGGGATTCCGTACAAGAAGAAGAAAAAAAAGAGAAAACTAATGAAGGCAAATCTTGACAATAATCCCAACATCTCCCTGCAACAGTCTTGA

Protein Analysis

184

Amino Acids

20.62

Weight (kDa)

10.05

Isoelectric Point (pI)

57.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ALOG_dom PF04852 25 - 148 7.8e-66 ALOG domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010649)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16910 AT1G78815
fragaria_vesca FvH4_3g18340 FvH4_3g18340
malus_domestica MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis pycom03g18980 pycom11g23180
rosa_chinensis RchiOBHm_Chr5g0030991
rosa_laevigata RLG00000033279
rosa_multiflora Rmu_sc0001974.1_g000001
rosa_roxburghii Rroxscaffold_1G00049260
rosa_rugosa Rorug05G0122100
rosa_samantha Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana Rw5G019700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 308
AclWI GGATC 1 cut(s) 43
AfaI GTAC 3 cut(s) 149, 221, 473
AfiI CCNNNNNNNGG 1 cut(s) 459
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 5 cut(s) 80, 320, 359, 413, 458
AluI AGCT 5 cut(s) 80, 320, 359, 413, 458
Alw21I GWGCWC 1 cut(s) 252
Alw44I GTGCAC 1 cut(s) 248
AlwI GGATC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 459
AoxI GGCC 2 cut(s) 164, 292
ApaLI GTGCAC 1 cut(s) 248
ApeKI GCWGC 4 cut(s) 85, 277, 327, 359
AspS9I GGNCC 2 cut(s) 226, 293
AvaI CYCGRG 1 cut(s) 459
AvaII GGWCC 1 cut(s) 226
AxyI CCTNAGG 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 252
Bbv12I GWGCWC 1 cut(s) 252
BbvI GCAGC 4 cut(s) 97, 289, 339, 346
BceAI ACGGC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 58
BisI GCNGC 4 cut(s) 86, 278, 328, 360
BlsI GCNGC 4 cut(s) 87, 279, 329, 361
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 226
BmeT110I CYCGRG 1 cut(s) 459
BmgT120I GGNCC 2 cut(s) 226, 293
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 291
BmsI GCATC 1 cut(s) 325
BplI GAGNNNNNCTC 2 cut(s) 430, 462
BpmI CTGGAG 1 cut(s) 153
Bpu10I CCTNAGC 1 cut(s) 282
BpuEI CTTGAG 2 cut(s) 172, 432
Bsc4I CCNNNNNNNGG 1 cut(s) 459
Bse118I RCCGGY 2 cut(s) 88, 102
Bse1I ACTGG 1 cut(s) 170
Bse21I CCTNAGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 459
BseMII CTCAG 4 cut(s) 89, 229, 273, 344
BseNI ACTGG 1 cut(s) 170
BseSI GKGCMC 1 cut(s) 252
BseXI GCAGC 4 cut(s) 97, 289, 339, 346
BshFI GGCC 2 cut(s) 166, 294
BsiHKAI GWGCWC 1 cut(s) 252
BsiHKCI CYCGRG 1 cut(s) 459
BsiSI CCGG 2 cut(s) 89, 103
BslFI GGGAC 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 459
BsmFI GGGAC 1 cut(s) 455
BsnI GGCC 2 cut(s) 166, 294
BsoBI CYCGRG 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 3 cut(s) 35, 58, 342
BspACI CCGC 1 cut(s) 308
BspANI GGCC 2 cut(s) 166, 294
BspCNI CTCAG 4 cut(s) 90, 228, 274, 345
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 43
BsrFI RCCGGY 2 cut(s) 88, 102
BsrI ACTGG 1 cut(s) 170
BssAI RCCGGY 2 cut(s) 88, 102
BssMI GATC 3 cut(s) 35, 58, 342
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 546
Bst6I CTCTTC 1 cut(s) 113
BstC8I GCNNGC 2 cut(s) 78, 90
BstDEI CTNAG 6 cut(s) 98, 215, 243, 282, 311, 353
BstKTI GATC 3 cut(s) 38, 61, 345
BstMBI GATC 3 cut(s) 35, 58, 342
BstMWI GCNNNNNNNGC 5 cut(s) 73, 82, 121, 283, 410
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 1 cut(s) 252
BstV1I GCAGC 4 cut(s) 97, 289, 339, 346
Bsu36I CCTNAGG 1 cut(s) 215
BsuRI GGCC 2 cut(s) 166, 294
BtsIMutI CAGTG 2 cut(s) 95, 338
Cac8I GCNNGC 2 cut(s) 78, 90
Cfr10I RCCGGY 2 cut(s) 88, 102
Cfr13I GGNCC 2 cut(s) 226, 293
Csp6I GTAC 3 cut(s) 148, 220, 472
CviAII CATG 1 cut(s) 200
CviQI GTAC 3 cut(s) 148, 220, 472
DdeI CTNAG 6 cut(s) 98, 215, 243, 282, 311, 353
DpnI GATC 3 cut(s) 37, 60, 344
DpnII GATC 3 cut(s) 35, 58, 342
Eam1104I CTCTTC 1 cut(s) 113
EarI CTCTTC 1 cut(s) 113
Eco147I AGGCCT 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 226
Eco81I CCTNAGG 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 459
EcoRII CCWGG 1 cut(s) 289
FaeI CATG 1 cut(s) 203
FaiI YATR 4 cut(s) 108, 201, 366, 416
FalI AAGNNNNNCTT 4 cut(s) 236, 268, 304, 336
FaqI GGGAC 1 cut(s) 455
FatI CATG 1 cut(s) 199
FbaI TGATCA 1 cut(s) 58
Fnu4HI GCNGC 4 cut(s) 86, 278, 328, 360
Fsp4HI GCNGC 4 cut(s) 86, 278, 328, 360
GluI GCNGC 4 cut(s) 86, 278, 328, 360
GsuI CTGGAG 1 cut(s) 153
HaeIII GGCC 2 cut(s) 166, 294
HapII CCGG 2 cut(s) 89, 103
Hin1II CATG 1 cut(s) 203
HindIII AAGCTT 2 cut(s) 78, 318
HinfI GANTC 4 cut(s) 110, 420, 443, 466
HpaII CCGG 2 cut(s) 89, 103
Hpy166II GTNNAC 2 cut(s) 6, 250
Hpy188I TCNGA 1 cut(s) 347
Hpy188III TCNNGA 3 cut(s) 206, 515, 549
Hpy8I GTNNAC 2 cut(s) 6, 250
Hpy99I CGWCG 1 cut(s) 43
HpyAV CCTTC 2 cut(s) 26, 499
HpyCH4III ACNGT 1 cut(s) 546
HpyCH4V TGCA 5 cut(s) 250, 300, 338, 404, 541
HpyF10VI GCNNNNNNNGC 5 cut(s) 73, 82, 121, 283, 410
HpyF3I CTNAG 6 cut(s) 98, 215, 243, 282, 311, 353
Hsp92II CATG 1 cut(s) 203
KroI GCCGGC 1 cut(s) 88
KroNI GCCGGC 1 cut(s) 90
Ksp22I TGATCA 1 cut(s) 58
Kzo9I GATC 3 cut(s) 35, 58, 342
LmnI GCTCC 2 cut(s) 97, 410
Lsp1109I GCAGC 4 cut(s) 97, 289, 339, 346
LweI GCATC 1 cut(s) 325
MalI GATC 3 cut(s) 37, 60, 344
MboI GATC 3 cut(s) 35, 58, 342
MboII GAAGA 4 cut(s) 130, 380, 490, 493
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 1 cut(s) 230
MlyI GAGTC 2 cut(s) 429, 437
MmeI TCCRAC 1 cut(s) 219
MnlI CCTC 6 cut(s) 114, 156, 177, 224, 297, 432
MroNI GCCGGC 1 cut(s) 88
MspI CCGG 2 cut(s) 89, 103
MspR9I CCNGG 1 cut(s) 291
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 5 cut(s) 73, 82, 121, 283, 410
NaeI GCCGGC 1 cut(s) 90
NdeII GATC 3 cut(s) 35, 58, 342
NgoMIV GCCGGC 1 cut(s) 88
NlaIII CATG 1 cut(s) 203
NlaIV GGNNCC 1 cut(s) 93
PceI AGGCCT 1 cut(s) 166
PdiI GCCGGC 1 cut(s) 90
PfeI GAWTC 2 cut(s) 110, 466
PkrI GCNGC 4 cut(s) 87, 279, 329, 361
PleI GAGTC 2 cut(s) 428, 437
PpsI GAGTC 2 cut(s) 428, 437
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 2 cut(s) 226, 293
RsaI GTAC 3 cut(s) 149, 221, 473
RsaNI GTAC 3 cut(s) 148, 220, 472
SatI GCNGC 4 cut(s) 86, 278, 328, 360
Sau3AI GATC 3 cut(s) 35, 58, 342
Sau96I GGNCC 2 cut(s) 226, 293
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 2 cut(s) 429, 437
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 1 cut(s) 252
SetI ASST 8 cut(s) 82, 221, 249, 305, 322, 361, 415, 460
SfaNI GCATC 1 cut(s) 325
SinI GGWCC 1 cut(s) 226
SmlI CTYRAG 2 cut(s) 151, 447
SmoI CTYRAG 2 cut(s) 151, 447
Sse9I AATT 1 cut(s) 230
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 1 cut(s) 308
StuI AGGCCT 1 cut(s) 166
StyD4I CCNGG 1 cut(s) 289
TaaI ACNGT 1 cut(s) 546
TasI AATT 1 cut(s) 230
TatI WGTACW 1 cut(s) 147
TfiI GAWTC 2 cut(s) 110, 466
TscAI CASTG 2 cut(s) 102, 345
TseI GCWGC 4 cut(s) 85, 277, 327, 359
TspDTI ATGAA 3 cut(s) 123, 381, 518
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 2 cut(s) 102, 345
VneI GTGCAC 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 226
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.