Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0010649

Physical Location & Seq

Genomic Coordinates Reverse (-)

9596864 .. 9599789

Gene Structure 2926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G165300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATGTCCACCAACAAGGGGAAAGATGTAGCAGAAGGATCGTCGTCTGCTTCTGCTGCTGCTGCTGATCAGCAACAACTGAAGCAGGCGCAGCCGGCTCAACTGAGCCGGTACGAATCACAGAAGAGGAGAGATTGGAACACTTTTGGGCAGTACTTGAGGAACCAGAGGCCTCCAGTTGCTCTTTCACAGAGTAACTCAAACCATGTCCTGGATTTCCTTCGGTACTTGGACCAATTCGGAAAGACCAAGGTGCACTTACAAGGGTGCGTGTTTTTTGGGCAGCCAGAGCCTCCTGGCCCTTGCACTTGTCCACTTAGGCAAGCTTGGGGGAGCCTTGATGCACTGATCGGACGGCTGAGAGCTGCTTATGAAGAGAATGGTGGTTTGCCAGAAACAAACCCATTTGCAAGTGGTGCTATAAGAGTGTATCTGCGTGAAGTCAGGGATTCTCAAGCCAAGGCTCGGGGAATTCCTTACAAGAAGAAGAAGAAGAAGAGGAATCTATTGAAGGCCAATCTCGACCACAATCCCAACTTCACCATGCACCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

186

Amino Acids

20.73

Weight (kDa)

9.93

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16910 AT1G78815
fragaria_vesca	FvH4_3g18340 FvH4_3g18340
malus_domestica	MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica	Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis	pycom03g18980 pycom11g23180
rosa_chinensis	RchiOBHm_Chr5g0030991
rosa_laevigata	RLG00000033279
rosa_multiflora	Rmu_sc0001974.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049260
rosa_rugosa	Rorug05G0122100
rosa_samantha	Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana	Rw5G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	211
AclWI	GGATC	1 cut(s)	46
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	101
AfaI	GTAC	3 cut(s)	113, 155, 227
AfiI	CCNNNNNNNGG	3 cut(s)	18, 211, 465
AgsI	TTSAA	1 cut(s)	511
AjnI	CCWGG	2 cut(s)	210, 295
AluBI	AGCT	2 cut(s)	326, 365
AluI	AGCT	2 cut(s)	326, 365
Alw21I	GWGCWC	1 cut(s)	258
Alw44I	GTGCAC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	465
AoxI	GGCC	3 cut(s)	170, 298, 513
ApaLI	GTGCAC	1 cut(s)	254
ApeKI	GCWGC	6 cut(s)	56, 59, 62, 91, 283, 365
ApoI	RAATTY	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	232, 299
AsuHPI	GGTGA	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	465
AvaII	GGWCC	1 cut(s)	232
BaeGI	GKGCMC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	258
BbvI	GCAGC	6 cut(s)	43, 46, 49, 103, 295, 352
BceAI	ACGGC	1 cut(s)	371
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BciT130I	CCWGG	2 cut(s)	212, 297
BclI	TGATCA	1 cut(s)	67
BisI	GCNGC	6 cut(s)	57, 60, 63, 92, 284, 366
BlsI	GCNGC	6 cut(s)	58, 61, 64, 93, 285, 367
BmcAI	AGTACT	1 cut(s)	155
Bme1390I	CCNGG	2 cut(s)	212, 297
Bme18I	GGWCC	1 cut(s)	232
BmeT110I	CYCGRG	1 cut(s)	465
BmgT120I	GGNCC	2 cut(s)	232, 299
BmiI	GGNNCC	2 cut(s)	164, 335
BmrFI	CCNGG	2 cut(s)	212, 297
BmsI	GCATC	1 cut(s)	331
BpmI	CTGGAG	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	178, 438
BsaJI	CCNNGG	2 cut(s)	249, 459
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 211, 465
Bse118I	RCCGGY	2 cut(s)	94, 108
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	212, 297
BseDI	CCNNGG	2 cut(s)	249, 459
BseLI	CCNNNNNNNGG	3 cut(s)	18, 211, 465
BseMII	CTCAG	2 cut(s)	95, 350
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	142
BseSI	GKGCMC	1 cut(s)	258
BseXI	GCAGC	6 cut(s)	43, 46, 49, 103, 295, 352
BshFI	GGCC	3 cut(s)	172, 300, 515
BsiHKAI	GWGCWC	1 cut(s)	258
BsiHKCI	CYCGRG	1 cut(s)	465
BsiSI	CCGG	2 cut(s)	95, 109
BslI	CCNNNNNNNGG	3 cut(s)	18, 211, 465
BsnI	GGCC	3 cut(s)	172, 300, 515
BsoBI	CYCGRG	1 cut(s)	465
Bsp1286I	GDGCHC	1 cut(s)	258
Bsp143I	GATC	3 cut(s)	38, 67, 348
BspANI	GGCC	3 cut(s)	172, 300, 515
BspCNI	CTCAG	2 cut(s)	96, 351
BspLI	GGNNCC	2 cut(s)	164, 335
BspPI	GGATC	1 cut(s)	46
BsrFI	RCCGGY	2 cut(s)	94, 108
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	2 cut(s)	94, 108
BssECI	CCNNGG	2 cut(s)	249, 459
BssMI	GATC	3 cut(s)	38, 67, 348
BssT1I	CCWWGG	2 cut(s)	249, 459
Bst2UI	CCWGG	2 cut(s)	212, 297
Bst6I	CTCTTC	3 cut(s)	119, 369, 491
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	87, 96, 324
BstDEI	CTNAG	3 cut(s)	104, 317, 359
BstHHI	GCGC	1 cut(s)	91
BstKTI	GATC	3 cut(s)	41, 70, 351
BstMBI	GATC	3 cut(s)	38, 67, 348
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 62, 91, 95, 289, 416
BstNI	CCWGG	2 cut(s)	212, 297
BstSCI	CCNGG	2 cut(s)	210, 295
BstSLI	GKGCMC	1 cut(s)	258
BstV1I	GCAGC	6 cut(s)	43, 46, 49, 103, 295, 352
BsuRI	GGCC	3 cut(s)	172, 300, 515
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	3 cut(s)	87, 96, 324
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	2 cut(s)	94, 108
Cfr13I	GGNCC	2 cut(s)	232, 299
Csp6I	GTAC	3 cut(s)	112, 154, 226
CviAII	CATG	2 cut(s)	206, 544
CviQI	GTAC	3 cut(s)	112, 154, 226
DdeI	CTNAG	3 cut(s)	104, 317, 359
DpnI	GATC	3 cut(s)	40, 69, 350
DpnII	GATC	3 cut(s)	38, 67, 348
Eam1104I	CTCTTC	3 cut(s)	119, 369, 491
EarI	CTCTTC	3 cut(s)	119, 369, 491
Eco130I	CCWWGG	2 cut(s)	249, 459
Eco147I	AGGCCT	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	232
Eco57I	CTGAAG	1 cut(s)	101
Eco88I	CYCGRG	1 cut(s)	465
EcoRI	GAATTC	1 cut(s)	471
EcoRII	CCWGG	2 cut(s)	210, 295
EcoT14I	CCWWGG	2 cut(s)	249, 459
ErhI	CCWWGG	2 cut(s)	249, 459
FaeI	CATG	2 cut(s)	209, 547
FaiI	YATR	4 cut(s)	207, 372, 422, 545
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	2 cut(s)	205, 543
FbaI	TGATCA	1 cut(s)	67
Fnu4HI	GCNGC	6 cut(s)	57, 60, 63, 92, 284, 366
Fsp4HI	GCNGC	6 cut(s)	57, 60, 63, 92, 284, 366
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	6 cut(s)	57, 60, 63, 92, 284, 366
GsuI	CTGGAG	1 cut(s)	159
HaeIII	GGCC	3 cut(s)	172, 300, 515
HapII	CCGG	2 cut(s)	95, 109
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	2 cut(s)	209, 547
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	3 cut(s)	116, 449, 502
HpaII	CCGG	2 cut(s)	95, 109
HphI	GGTGA	1 cut(s)	532
Hpy166II	GTNNAC	3 cut(s)	9, 256, 314
Hpy188I	TCNGA	2 cut(s)	242, 353
Hpy188III	TCNNGA	2 cut(s)	521, 555
Hpy8I	GTNNAC	3 cut(s)	9, 256, 314
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	3 cut(s)	29, 230, 505
HpyCH4V	TGCA	5 cut(s)	256, 306, 344, 410, 547
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 62, 91, 95, 289, 416
HpyF3I	CTNAG	3 cut(s)	104, 317, 359
Hsp92II	CATG	2 cut(s)	209, 547
HspAI	GCGC	1 cut(s)	89
KroI	GCCGGC	1 cut(s)	94
KroNI	GCCGGC	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	67
Kzo9I	GATC	3 cut(s)	38, 67, 348
LmnI	GCTCC	1 cut(s)	333
Lsp1109I	GCAGC	6 cut(s)	43, 46, 49, 103, 295, 352
LweI	GCATC	1 cut(s)	331
MaeIII	GTNAC	1 cut(s)	194
MalI	GATC	3 cut(s)	40, 69, 350
MboI	GATC	3 cut(s)	38, 67, 348
MboII	GAAGA	7 cut(s)	136, 386, 496, 499, 502, 505, 508
MhlI	GDGCHC	1 cut(s)	258
MluCI	AATT	2 cut(s)	236, 471
MnlI	CCTC	6 cut(s)	120, 153, 162, 183, 303, 492
MroNI	GCCGGC	1 cut(s)	94
MspI	CCGG	2 cut(s)	95, 109
MspR9I	CCNGG	2 cut(s)	212, 297
MvaI	CCWGG	2 cut(s)	212, 297
MwoI	GCNNNNNNNGC	6 cut(s)	56, 62, 91, 95, 289, 416
NaeI	GCCGGC	1 cut(s)	96
NdeII	GATC	3 cut(s)	38, 67, 348
NgoMIV	GCCGGC	1 cut(s)	94
NlaIII	CATG	2 cut(s)	209, 547
NlaIV	GGNNCC	2 cut(s)	164, 335
PceI	AGGCCT	1 cut(s)	172
PdiI	GCCGGC	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	116, 449, 502
PflMI	CCANNNNNTGG	1 cut(s)	211
PfoI	TCCNGGA	1 cut(s)	210
PkrI	GCNGC	6 cut(s)	58, 61, 64, 93, 285, 367
Psp6I	CCWGG	2 cut(s)	210, 295
PspGI	CCWGG	2 cut(s)	210, 295
PspN4I	GGNNCC	2 cut(s)	164, 335
PspPI	GGNCC	2 cut(s)	232, 299
RsaI	GTAC	3 cut(s)	113, 155, 227
RsaNI	GTAC	3 cut(s)	112, 154, 226
SatI	GCNGC	6 cut(s)	57, 60, 63, 92, 284, 366
Sau3AI	GATC	3 cut(s)	38, 67, 348
Sau96I	GGNCC	2 cut(s)	232, 299
ScaI	AGTACT	1 cut(s)	155
ScrFI	CCNGG	2 cut(s)	212, 297
SduI	GDGCHC	1 cut(s)	258
SetI	ASST	3 cut(s)	255, 328, 367
SfaNI	GCATC	1 cut(s)	331
SinI	GGWCC	1 cut(s)	232
SmlI	CTYRAG	2 cut(s)	157, 453
SmoI	CTYRAG	2 cut(s)	157, 453
Sse9I	AATT	2 cut(s)	236, 471
SseBI	AGGCCT	1 cut(s)	172
StuI	AGGCCT	1 cut(s)	172
StyD4I	CCNGG	2 cut(s)	210, 295
StyI	CCWWGG	2 cut(s)	249, 459
TaqI	TCGA	1 cut(s)	522
TasI	AATT	2 cut(s)	236, 471
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	3 cut(s)	116, 449, 502
TscAI	CASTG	1 cut(s)	351
TseI	GCWGC	6 cut(s)	56, 59, 62, 91, 283, 365
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	351
Van91I	CCANNNNNTGG	1 cut(s)	211
VneI	GTGCAC	1 cut(s)	254
VpaK11BI	GGWCC	1 cut(s)	232
XapI	RAATTY	1 cut(s)	471
ZrmI	AGTACT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.