Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010649

Physical Location & Seq

Genomic Coordinates Forward (+)

10800807 .. 10802824

Gene Structure 2018 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0122100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1479 bp

ATGGAGTTTCTTTCAAAGATTGCTGACTACACGATTGAACCTTTTTTACGTCTACTGGGACGCCAAGTGGGTTATGTAATTCACTGCAAAACCAACCTTCAAAATTTGCAAGCTAAAGTGGAAGAATTGAAAGCTGCCAGACAGTCGGTGGAGAATAAGATTGCTGAAGCTGAAAGAAAAGGTGAAGGCATTCAACCTGATGTCCAGTTGTGGCTGACAAAAGTGGGTCAGATCACTGCACAGACAGACGAATTGTTGAATGATGAAGGCCAAGCACAGCTGAAATGTTTCCATGGATTTTGTCCTAATCTTACTGTCCGTCATCAGCTAAGCAGGAGATCAACAAAGTTGGCACAGGAGGTTGTTGAAAACCATGAAAAAAGAGGATTAATTTCCCAAGTCTCATGCGGTATTCTCCCGAAAGAGGTATGGAGTGTAACTAGCGGAGATTACCAGGCTTTTCAATCAAGGATGTCAATTGTGAAGGAAATCATGGATAGTCTGAAAGACTCTGATATTCAGAGGATGGGGGTGTGTGGAATTGGAGGAGTGGGTAAAACCACATTGGTCAAAGAAGTTTACAAGCTAGCTTCAGAGGATAAAGAGTTATTTGATAATGTGGTTATCCTACTAGATGTGAAGGAGGAGCCAAACCTTGAAGCAATTCAAAAGAAAATTGTTGAGCAGTTGAACATGGACATTCTTCCAAATGAAACTATAGTCAGAAGAGCCCGTCGTCTCTGCGCCAGGATACAAGGCAAAAAGGTTCTTGTGATTCTGGATGATGTTCAAGAAAAAATTGATTTGGAGGTTGCTGGACTTCCCCGTCTACCAACTTGTAAAATTTTGGTGACATGCAGAACTCGGGAAGTTTTATCTTTCGCTGAGATGCGCGCTGAAAAAGTTTTTCAGCTTGACCTTTTAGTTAAAGAAGAGACGTGGAGTTTGTTTATGAGGATGGCAGGAGATGTTGTTGAACACAATGGTCGTGTACGAGATGTAGCAATCCAAATAGCCGAAAAATGTGGAGGTTTGCCGTTATTAGTCGTCACAGTTGCAAGTGCTCTAAAAGGAAAAAAGAAACTACAAGCATGGAAAGATGCCTTAAGACGACTTAAAAGTTTTGACAAAGAAGAGTTGACAAAAAAGGCATATTTGGCTTTGGAGTGGAGTTATGATCAACTGGATGACAAGGAGCTTAAACCAATATTCTTGCTCTGCGGAATGATAGTGATGCGGAACGATATTTGTTTGCAAGACATGCTGAAATATGGTATGGGTTTAGGCTTGTTTAAAAACATCTATTCGGTGGAAGAAGCACAAGATTCCATGGATACGTTTATCGAAAAACTAAAAGATTCTTGCTTGTTGCTAGACAGTGATAACGAGGGATTTGTCAGAATGCATGACATTGTATGTGATGTTGCTAAATGGATCTCACACAGAGATCAATTAATTCGTATTAGCAGTAGAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

492

Amino Acids

56.0

Weight (kDa)

6.7

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TniB	PF05621	151 - 264	2e-06	Bacterial TniB protein
NB-ARC	PF00931	161 - 322	4.3e-27	NB-ARC domain
AAA_22	PF13401	178 - 267	3.8e-06	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16910 AT1G78815
fragaria_vesca	FvH4_3g18340 FvH4_3g18340
malus_domestica	MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica	Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis	pycom03g18980 pycom11g23180
rosa_chinensis	RchiOBHm_Chr5g0030991
rosa_laevigata	RLG00000033279
rosa_multiflora	Rmu_sc0001974.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049260
rosa_rugosa	Rorug05G0122100
rosa_samantha	Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana	Rw5G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	825
AccI	GTMKAC	2 cut(s)	52, 829
AccII	CGCG	1 cut(s)	894
AciI	CCGC	4 cut(s)	408, 444, 1221, 1237
AclWI	GGATC	1 cut(s)	1442
AcsI	RAATTY	2 cut(s)	103, 843
AcuI	CTGAAG	2 cut(s)	186, 576
AcyI	GRCGYC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	993
AfiI	CCNNNNNNNGG	1 cut(s)	424
AflII	CTTAAG	1 cut(s)	1105
AjiI	CACGTC	1 cut(s)	939
AjnI	CCWGG	2 cut(s)	453, 746
AluBI	AGCT	9 cut(s)	113, 134, 170, 280, 328, 586, 590, 913, 1198
AluI	AGCT	9 cut(s)	113, 134, 170, 280, 328, 586, 590, 913, 1198
Alw21I	GWGCWC	1 cut(s)	1066
Alw26I	GTCTC	3 cut(s)	406, 743, 929
AlwI	GGATC	1 cut(s)	1442
Ama87I	CYCGRG	1 cut(s)	864
AoxI	GGCC	1 cut(s)	268
ApeKI	GCWGC	1 cut(s)	134
ApoI	RAATTY	2 cut(s)	103, 843
ArsI	GACNNNNNNTTYG	2 cut(s)	928, 960
AseI	ATTAAT	2 cut(s)	389, 1454
Asp700I	GAANNNNTTC	3 cut(s)	189, 287, 663
AspLEI	GCGC	3 cut(s)	746, 894, 896
AsuHPI	GGTGA	2 cut(s)	194, 862
AsuNHI	GCTAGC	1 cut(s)	586
AvaI	CYCGRG	1 cut(s)	864
BanII	GRGCYC	1 cut(s)	733
Bbv12I	GWGCWC	1 cut(s)	1066
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	2 cut(s)	520, 952
BceAI	ACGGC	1 cut(s)	1021
BciT130I	CCWGG	2 cut(s)	455, 748
BciVI	GTATCC	2 cut(s)	744, 1327
BclI	TGATCA	1 cut(s)	1177
BcoDI	GTCTC	3 cut(s)	406, 743, 929
BfaI	CTAG	4 cut(s)	441, 587, 632, 1373
BfmI	CTRYAG	1 cut(s)	717
BfrI	CTTAAG	1 cut(s)	1105
BfuI	GTATCC	2 cut(s)	744, 1327
BisI	GCNGC	1 cut(s)	135
BlpI	GCTNAGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	136
Bme1390I	CCNGG	2 cut(s)	455, 748
BmeT110I	CYCGRG	1 cut(s)	864
BmgBI	CACGTC	1 cut(s)	939
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	2 cut(s)	455, 748
BmrI	ACTGGG	1 cut(s)	65
BmsI	GCATC	3 cut(s)	879, 1090, 1224
BmtI	GCTAGC	1 cut(s)	590
BmuI	ACTGGG	1 cut(s)	65
Bpu1102I	GCTNAGC	1 cut(s)	329
BsaHI	GRCGYC	1 cut(s)	61
BsaJI	CCNNGG	2 cut(s)	292, 1329
BsaXI	ACNNNNNCTCC	2 cut(s)	957, 987
Bsc4I	CCNNNNNNNGG	1 cut(s)	424
Bse1I	ACTGG	3 cut(s)	60, 205, 1188
BseBI	CCWGG	2 cut(s)	455, 748
BseDI	CCNNGG	2 cut(s)	292, 1329
BseGI	GGATG	5 cut(s)	477, 531, 787, 963, 1192
BseLI	CCNNNNNNNGG	1 cut(s)	424
BseMII	CTCAG	1 cut(s)	876
BseNI	ACTGG	3 cut(s)	60, 205, 1188
BsePI	GCGCGC	1 cut(s)	892
BseRI	GAGGAG	2 cut(s)	561, 659
BseXI	GCAGC	1 cut(s)	121
BsgI	GTGCAG	1 cut(s)	222
Bsh1236I	CGCG	1 cut(s)	894
BshFI	GGCC	1 cut(s)	270
BsiHKAI	GWGCWC	1 cut(s)	1066
BsiHKCI	CYCGRG	1 cut(s)	864
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	424
BsmAI	GTCTC	3 cut(s)	406, 743, 929
BsmBI	CGTCTC	2 cut(s)	743, 929
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	2 cut(s)	189, 1407
BsnI	GGCC	1 cut(s)	270
BsoBI	CYCGRG	1 cut(s)	864
Bsp1286I	GDGCHC	2 cut(s)	733, 1066
Bsp143I	GATC	5 cut(s)	231, 338, 1177, 1434, 1447
Bsp1720I	GCTNAGC	1 cut(s)	329
Bsp19I	CCATGG	2 cut(s)	292, 1329
BspACI	CCGC	4 cut(s)	408, 444, 1221, 1237
BspANI	GGCC	1 cut(s)	270
BspCNI	CTCAG	1 cut(s)	877
BspFNI	CGCG	1 cut(s)	894
BspLI	GGNNCC	1 cut(s)	648
BspOI	GCTAGC	1 cut(s)	590
BspPI	GGATC	1 cut(s)	1442
BspQI	GCTCTTC	1 cut(s)	721
BspTI	CTTAAG	1 cut(s)	1105
BsrI	ACTGG	3 cut(s)	60, 205, 1188
BssECI	CCNNGG	2 cut(s)	292, 1329
BssHII	GCGCGC	1 cut(s)	892
BssMI	GATC	5 cut(s)	231, 338, 1177, 1434, 1447
BssNI	GRCGYC	1 cut(s)	61
BssT1I	CCWWGG	2 cut(s)	292, 1329
Bst2UI	CCWGG	2 cut(s)	455, 748
Bst4CI	ACNGT	4 cut(s)	144, 316, 1054, 1379
Bst6I	CTCTTC	3 cut(s)	721, 927, 1128
BstACI	GRCGYC	1 cut(s)	61
BstAFI	CTTAAG	1 cut(s)	1105
BstAPI	GCANNNNNTGC	1 cut(s)	1261
BstC8I	GCNNGC	3 cut(s)	111, 588, 894
BstDEI	CTNAG	2 cut(s)	329, 885
BstDSI	CCRYGG	2 cut(s)	292, 1329
BstF5I	GGATG	5 cut(s)	477, 531, 787, 963, 1192
BstFNI	CGCG	1 cut(s)	894
BstHHI	GCGC	3 cut(s)	746, 894, 896
BstKTI	GATC	5 cut(s)	234, 341, 1180, 1437, 1450
BstMAI	GTCTC	3 cut(s)	406, 743, 929
BstMBI	GATC	5 cut(s)	231, 338, 1177, 1434, 1447
BstMWI	GCNNNNNNNGC	2 cut(s)	1157, 1261
BstNI	CCWGG	2 cut(s)	455, 748
BstNSI	RCATGY	2 cut(s)	858, 1264
BstSCI	CCNGG	2 cut(s)	453, 746
BstSFI	CTRYAG	1 cut(s)	717
BstUI	CGCG	1 cut(s)	894
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	1434
BstYI	RGATCY	1 cut(s)	1434
BsuI	GTATCC	2 cut(s)	744, 1327
BsuRI	GGCC	1 cut(s)	270
BtgI	CCRYGG	2 cut(s)	292, 1329
BtrI	CACGTC	1 cut(s)	939
BtsCI	GGATG	5 cut(s)	477, 531, 787, 963, 1192
BtsI	GCAGTG	2 cut(s)	82, 234
BtsIMutI	CAGTG	3 cut(s)	82, 234, 1384
Cac8I	GCNNGC	3 cut(s)	111, 588, 894
CfoI	GCGC	3 cut(s)	746, 894, 896
CseI	GACGC	1 cut(s)	69
Csp6I	GTAC	1 cut(s)	992
CviQI	GTAC	1 cut(s)	992
DdeI	CTNAG	2 cut(s)	329, 885
DpnI	GATC	5 cut(s)	233, 340, 1179, 1436, 1449
DpnII	GATC	5 cut(s)	231, 338, 1177, 1434, 1447
DraI	TTTAAA	1 cut(s)	1294
DrdI	GACNNNNNNGTC	1 cut(s)	825
DseDI	GACNNNNNNGTC	1 cut(s)	825
Eam1104I	CTCTTC	3 cut(s)	721, 927, 1128
EarI	CTCTTC	3 cut(s)	721, 927, 1128
Eco130I	CCWWGG	2 cut(s)	292, 1329
Eco24I	GRGCYC	1 cut(s)	733
Eco57I	CTGAAG	2 cut(s)	186, 576
Eco88I	CYCGRG	1 cut(s)	864
EcoRII	CCWGG	2 cut(s)	453, 746
EcoT14I	CCWWGG	2 cut(s)	292, 1329
EcoT22I	ATGCAT	1 cut(s)	1407
EcoT38I	GRGCYC	1 cut(s)	733
ErhI	CCWWGG	2 cut(s)	292, 1329
Esp3I	CGTCTC	2 cut(s)	743, 929
FaqI	GGGAC	1 cut(s)	72
FbaI	TGATCA	1 cut(s)	1177
FblI	GTMKAC	2 cut(s)	52, 829
Fnu4HI	GCNGC	1 cut(s)	135
FokI	GGATG	5 cut(s)	484, 538, 794, 970, 1199
FriOI	GRGCYC	1 cut(s)	733
Fsp4HI	GCNGC	1 cut(s)	135
FspBI	CTAG	4 cut(s)	441, 587, 632, 1373
GlaI	GCGC	3 cut(s)	745, 893, 895
GluI	GCNGC	1 cut(s)	135
HaeIII	GGCC	1 cut(s)	270
HgaI	GACGC	1 cut(s)	69
HhaI	GCGC	3 cut(s)	746, 894, 896
Hin1I	GRCGYC	1 cut(s)	61
Hin6I	GCGC	3 cut(s)	744, 892, 894
HinP1I	GCGC	3 cut(s)	744, 892, 894
HincII	GTYRAC	1 cut(s)	1140
HindII	GTYRAC	1 cut(s)	1140
HinfI	GANTC	4 cut(s)	509, 775, 1325, 1358
HphI	GGTGA	2 cut(s)	194, 862
Hpy166II	GTNNAC	5 cut(s)	53, 580, 830, 992, 1140
Hpy188I	TCNGA	7 cut(s)	231, 504, 514, 522, 595, 725, 1400
Hpy188III	TCNNGA	4 cut(s)	418, 779, 791, 866
Hpy8I	GTNNAC	5 cut(s)	53, 580, 830, 992, 1140
Hpy99I	CGWCG	1 cut(s)	738
HpyAV	CCTTC	5 cut(s)	107, 179, 260, 478, 634
HpyCH4III	ACNGT	4 cut(s)	144, 316, 1054, 1379
HpyCH4IV	ACGT	3 cut(s)	49, 938, 1337
HpyCH4V	TGCA	7 cut(s)	87, 109, 239, 858, 1058, 1255, 1405
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1157, 1261
HpyF3I	CTNAG	2 cut(s)	329, 885
HpySE526I	ACGT	3 cut(s)	49, 938, 1337
Hsp92I	GRCGYC	1 cut(s)	61
HspAI	GCGC	3 cut(s)	744, 892, 894
Ksp22I	TGATCA	1 cut(s)	1177
Kzo9I	GATC	5 cut(s)	231, 338, 1177, 1434, 1447
LguI	GCTCTTC	1 cut(s)	721
LmnI	GCTCC	2 cut(s)	646, 1195
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	3 cut(s)	879, 1090, 1224
MaeI	CTAG	4 cut(s)	441, 587, 632, 1373
MaeII	ACGT	3 cut(s)	49, 938, 1337
MaeIII	GTNAC	3 cut(s)	436, 850, 1048
MalI	GATC	5 cut(s)	233, 340, 1179, 1436, 1449
MboI	GATC	5 cut(s)	231, 338, 1177, 1434, 1447
MboII	GAAGA	6 cut(s)	134, 695, 738, 944, 1145, 1325
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	1 cut(s)	1434
MhlI	GDGCHC	2 cut(s)	733, 1066
MlyI	GAGTC	1 cut(s)	503
Mph1103I	ATGCAT	1 cut(s)	1407
MroXI	GAANNNNTTC	3 cut(s)	189, 287, 663
MseI	TTAA	7 cut(s)	389, 927, 1106, 1116, 1200, 1293, 1454
MspA1I	CMGCKG	1 cut(s)	280
MspCI	CTTAAG	1 cut(s)	1105
MspR9I	CCNGG	2 cut(s)	455, 748
MunI	CAATTG	1 cut(s)	477
Mva1269I	GAATGC	2 cut(s)	189, 1407
MvaI	CCWGG	2 cut(s)	455, 748
MvnI	CGCG	1 cut(s)	894
MwoI	GCNNNNNNNGC	2 cut(s)	1157, 1261
NcoI	CCATGG	2 cut(s)	292, 1329
NdeII	GATC	5 cut(s)	231, 338, 1177, 1434, 1447
NheI	GCTAGC	1 cut(s)	586
NlaIV	GGNNCC	1 cut(s)	648
NmuCI	GTSAC	2 cut(s)	850, 1048
NsiI	ATGCAT	1 cut(s)	1407
NspI	RCATGY	2 cut(s)	858, 1264
PauI	GCGCGC	1 cut(s)	892
PciSI	GCTCTTC	1 cut(s)	721
PctI	GAATGC	2 cut(s)	189, 1407
PdmI	GAANNNNTTC	3 cut(s)	189, 287, 663
PfeI	GAWTC	3 cut(s)	775, 1325, 1358
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
PshBI	ATTAAT	2 cut(s)	389, 1454
Psp6I	CCWGG	2 cut(s)	453, 746
PspGI	CCWGG	2 cut(s)	453, 746
PspN4I	GGNNCC	1 cut(s)	648
PsrI	GAACNNNNNNTAC	2 cut(s)	30, 62
PsuI	RGATCY	1 cut(s)	1434
PteI	GCGCGC	1 cut(s)	892
PvuII	CAGCTG	1 cut(s)	280
RsaI	GTAC	1 cut(s)	993
RsaNI	GTAC	1 cut(s)	992
SapI	GCTCTTC	1 cut(s)	721
SaqAI	TTAA	7 cut(s)	389, 927, 1106, 1116, 1200, 1293, 1454
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	5 cut(s)	231, 338, 1177, 1434, 1447
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	455, 748
SduI	GDGCHC	2 cut(s)	733, 1066
SfaNI	GCATC	3 cut(s)	879, 1090, 1224
SfcI	CTRYAG	1 cut(s)	717
SmlI	CTYRAG	1 cut(s)	1105
SmoI	CTYRAG	1 cut(s)	1105
SsiI	CCGC	4 cut(s)	408, 444, 1221, 1237
SspI	AATATT	1 cut(s)	1209
SspMI	CTAG	4 cut(s)	441, 587, 632, 1373
StyD4I	CCNGG	2 cut(s)	453, 746
StyI	CCWWGG	2 cut(s)	292, 1329
TaaI	ACNGT	4 cut(s)	144, 316, 1054, 1379
TaiI	ACGT	3 cut(s)	52, 941, 1340
TaqI	TCGA	1 cut(s)	1344
TfiI	GAWTC	3 cut(s)	775, 1325, 1358
Tru1I	TTAA	7 cut(s)	389, 927, 1106, 1116, 1200, 1293, 1454
Tru9I	TTAA	7 cut(s)	389, 927, 1106, 1116, 1200, 1293, 1454
TscAI	CASTG	3 cut(s)	89, 241, 1384
TseFI	GTSAC	2 cut(s)	850, 1048
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	2 cut(s)	850, 1048
TspDTI	ATGAA	3 cut(s)	279, 390, 726
TspGWI	ACGGA	1 cut(s)	308
TspRI	CASTG	3 cut(s)	89, 241, 1384
Vha464I	CTTAAG	1 cut(s)	1105
VspI	ATTAAT	2 cut(s)	389, 1454
XapI	RAATTY	2 cut(s)	103, 843
XceI	RCATGY	2 cut(s)	858, 1264
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XmiI	GTMKAC	2 cut(s)	52, 829
XmnI	GAANNNNTTC	3 cut(s)	189, 287, 663
XspI	CTAG	4 cut(s)	441, 587, 632, 1373
Zsp2I	ATGCAT	1 cut(s)	1407

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.