Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010649

Physical Location & Seq

Genomic Coordinates Forward (+)

32727823 .. 32730917

Gene Structure 3095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1242600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCTACCAACAAAGGAAAAGATGTAGCGGAAGGATCATCGTCTGCTTCTGCTACTACTACTGATCATCAGCAACAGAAGCAGACTTCGCAGCCGCCAGCTCAGCTGAGCCGGTACGAGTCACAGAAGAGGAGAGATTGGAACACTTTTGGGCAGTACTTGAGGAACCAGAGGCCTCCAGTTGCTCTTTCACAGAGTAACTCCAACCATGTGCTTGATTTCCTAAGGTACCTGGACCAATTTGGAAAGACCAAGGTGCACGCTCAAGGATGTGTATTTTTTGGGCAACCTGAGCCTCCTGGCCCTTGCACCTGTCCGCTAAGACAAGCTTGGGGCAGCCTTGATGCACTGATCGGACGGCTGAGAGCTGCTTATGAAGAAAATGGTGGGTTGCCAGAAACAAACCCATTTGCAAGTGGAGCTATAAGAGTCTATCTGCGTGAGGTGAGGGACTCTCAAGCCAAGGCTCGGGGAATTCCGTACAAGAAGAAGAAAAAGAAGAGAAATCTAATGAAGGCAAATCTTGACCATAATCCCAACATCTCCATGCAGCAGTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

187

Amino Acids

20.85

Weight (kDa)

9.93

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	28 - 151	2.5e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16910 AT1G78815
fragaria_vesca	FvH4_3g18340 FvH4_3g18340
malus_domestica	MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica	Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis	pycom03g18980 pycom11g23180
rosa_chinensis	RchiOBHm_Chr5g0030991
rosa_laevigata	RLG00000033279
rosa_multiflora	Rmu_sc0001974.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049260
rosa_rugosa	Rorug05G0122100
rosa_samantha	Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana	Rw5G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	228
AccB1I	GGYRCC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	3 cut(s)	29, 95, 317
AclWI	GGATC	1 cut(s)	43
AcsI	RAATTY	1 cut(s)	474
AfaI	GTAC	4 cut(s)	116, 158, 230, 482
AfiI	CCNNNNNNNGG	1 cut(s)	468
AjnI	CCWGG	2 cut(s)	231, 298
AluBI	AGCT	5 cut(s)	101, 106, 329, 368, 422
AluI	AGCT	5 cut(s)	101, 106, 329, 368, 422
Alw21I	GWGCWC	1 cut(s)	261
Alw44I	GTGCAC	1 cut(s)	257
AlwI	GGATC	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	468
AoxI	GGCC	2 cut(s)	173, 301
ApaLI	GTGCAC	1 cut(s)	257
ApeKI	GCWGC	4 cut(s)	91, 336, 368, 550
ApoI	RAATTY	1 cut(s)	474
Asp718I	GGTACC	1 cut(s)	228
AspS9I	GGNCC	2 cut(s)	235, 302
AsuHPI	GGTGA	1 cut(s)	457
AvaI	CYCGRG	1 cut(s)	468
AvaII	GGWCC	1 cut(s)	235
AxyI	CCTNAGG	1 cut(s)	224
BaeGI	GKGCMC	1 cut(s)	261
BanI	GGYRCC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	103, 348, 355
BceAI	ACGGC	1 cut(s)	374
BciT130I	CCWGG	2 cut(s)	233, 300
BclI	TGATCA	1 cut(s)	64
BisI	GCNGC	5 cut(s)	92, 95, 337, 369, 551
BlpI	GCTNAGC	2 cut(s)	102, 107
BlsI	GCNGC	5 cut(s)	93, 96, 338, 370, 552
BmcAI	AGTACT	1 cut(s)	158
Bme1390I	CCNGG	2 cut(s)	233, 300
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	468
BmgT120I	GGNCC	2 cut(s)	235, 302
BmiI	GGNNCC	2 cut(s)	167, 230
BmrFI	CCNGG	2 cut(s)	233, 300
BmsI	GCATC	1 cut(s)	334
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpmI	CTGGAG	1 cut(s)	162
Bpu10I	CCTNAGC	1 cut(s)	291
Bpu1102I	GCTNAGC	2 cut(s)	102, 107
BpuEI	CTTGAG	3 cut(s)	181, 249, 441
BsaJI	CCNNGG	2 cut(s)	252, 462
Bsc4I	CCNNNNNNNGG	1 cut(s)	468
Bse118I	RCCGGY	1 cut(s)	111
Bse1I	ACTGG	1 cut(s)	179
Bse21I	CCTNAGG	1 cut(s)	224
BseBI	CCWGG	2 cut(s)	233, 300
BseDI	CCNNGG	2 cut(s)	252, 462
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	1 cut(s)	468
BseMII	CTCAG	4 cut(s)	98, 116, 282, 353
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	145
BseSI	GKGCMC	1 cut(s)	261
BseXI	GCAGC	3 cut(s)	103, 348, 355
BshFI	GGCC	2 cut(s)	175, 303
BshNI	GGYRCC	1 cut(s)	228
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	1 cut(s)	112
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	468
BsmFI	GGGAC	1 cut(s)	464
BsnI	GGCC	2 cut(s)	175, 303
BsoBI	CYCGRG	1 cut(s)	468
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	3 cut(s)	35, 64, 351
Bsp1720I	GCTNAGC	2 cut(s)	102, 107
BspACI	CCGC	3 cut(s)	29, 95, 317
BspANI	GGCC	2 cut(s)	175, 303
BspCNI	CTCAG	4 cut(s)	99, 115, 283, 354
BspLI	GGNNCC	2 cut(s)	167, 230
BspPI	GGATC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	111
BssECI	CCNNGG	2 cut(s)	252, 462
BssMI	GATC	3 cut(s)	35, 64, 351
BssT1I	CCWWGG	2 cut(s)	252, 462
Bst2UI	CCWGG	2 cut(s)	233, 300
Bst6I	CTCTTC	2 cut(s)	122, 494
BstC8I	GCNNGC	2 cut(s)	99, 261
BstDEI	CTNAG	6 cut(s)	102, 107, 224, 291, 320, 362
BstF5I	GGATG	1 cut(s)	275
BstKTI	GATC	3 cut(s)	38, 67, 354
BstMBI	GATC	3 cut(s)	35, 64, 351
BstMWI	GCNNNNNNNGC	5 cut(s)	79, 88, 103, 292, 419
BstNI	CCWGG	2 cut(s)	233, 300
BstSCI	CCNGG	2 cut(s)	231, 298
BstSLI	GKGCMC	1 cut(s)	261
BstV1I	GCAGC	3 cut(s)	103, 348, 355
Bsu36I	CCTNAGG	1 cut(s)	224
BsuRI	GGCC	2 cut(s)	175, 303
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	1 cut(s)	347
Cac8I	GCNNGC	2 cut(s)	99, 261
Cfr10I	RCCGGY	1 cut(s)	111
Cfr13I	GGNCC	2 cut(s)	235, 302
Csp6I	GTAC	4 cut(s)	115, 157, 229, 481
CviAII	CATG	2 cut(s)	209, 547
CviQI	GTAC	4 cut(s)	115, 157, 229, 481
DdeI	CTNAG	6 cut(s)	102, 107, 224, 291, 320, 362
DpnI	GATC	3 cut(s)	37, 66, 353
DpnII	GATC	3 cut(s)	35, 64, 351
Eam1104I	CTCTTC	2 cut(s)	122, 494
EarI	CTCTTC	2 cut(s)	122, 494
Eco130I	CCWWGG	2 cut(s)	252, 462
Eco147I	AGGCCT	1 cut(s)	175
Eco47I	GGWCC	1 cut(s)	235
Eco81I	CCTNAGG	1 cut(s)	224
Eco88I	CYCGRG	1 cut(s)	468
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	2 cut(s)	231, 298
EcoT14I	CCWWGG	2 cut(s)	252, 462
ErhI	CCWWGG	2 cut(s)	252, 462
FaeI	CATG	2 cut(s)	212, 550
FaiI	YATR	5 cut(s)	210, 375, 425, 531, 548
FalI	AAGNNNNNCTT	2 cut(s)	313, 345
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	2 cut(s)	208, 546
FbaI	TGATCA	1 cut(s)	64
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	92, 95, 337, 369, 551
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	5 cut(s)	92, 95, 337, 369, 551
GluI	GCNGC	5 cut(s)	92, 95, 337, 369, 551
GsuI	CTGGAG	1 cut(s)	162
HaeIII	GGCC	2 cut(s)	175, 303
HapII	CCGG	1 cut(s)	112
Hin1II	CATG	2 cut(s)	212, 550
HindIII	AAGCTT	1 cut(s)	327
HinfI	GANTC	3 cut(s)	119, 429, 452
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	1 cut(s)	457
Hpy166II	GTNNAC	2 cut(s)	6, 259
Hpy188I	TCNGA	1 cut(s)	356
Hpy188III	TCNNGA	2 cut(s)	524, 558
Hpy8I	GTNNAC	2 cut(s)	6, 259
HpyAV	CCTTC	2 cut(s)	26, 508
HpyCH4V	TGCA	5 cut(s)	259, 309, 347, 413, 550
HpyF10VI	GCNNNNNNNGC	5 cut(s)	79, 88, 103, 292, 419
HpyF3I	CTNAG	6 cut(s)	102, 107, 224, 291, 320, 362
Hsp92II	CATG	2 cut(s)	212, 550
KpnI	GGTACC	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	3 cut(s)	35, 64, 351
LmnI	GCTCC	1 cut(s)	419
Lsp1109I	GCAGC	3 cut(s)	103, 348, 355
LweI	GCATC	1 cut(s)	334
MaeIII	GTNAC	2 cut(s)	120, 197
MalI	GATC	3 cut(s)	37, 66, 353
MboI	GATC	3 cut(s)	35, 64, 351
MboII	GAAGA	5 cut(s)	139, 389, 499, 502, 511
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	2 cut(s)	239, 474
MlyI	GAGTC	3 cut(s)	128, 438, 446
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	7 cut(s)	123, 156, 165, 186, 306, 436, 441
MslI	CAYNNNNRTG	1 cut(s)	545
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	2 cut(s)	233, 300
MvaI	CCWGG	2 cut(s)	233, 300
MwoI	GCNNNNNNNGC	5 cut(s)	79, 88, 103, 292, 419
NdeII	GATC	3 cut(s)	35, 64, 351
NlaIII	CATG	2 cut(s)	212, 550
NlaIV	GGNNCC	2 cut(s)	167, 230
NmuCI	GTSAC	1 cut(s)	120
PceI	AGGCCT	1 cut(s)	175
PkrI	GCNGC	5 cut(s)	93, 96, 338, 370, 552
PleI	GAGTC	3 cut(s)	127, 437, 446
PpsI	GAGTC	3 cut(s)	127, 437, 446
Psp6I	CCWGG	2 cut(s)	231, 298
PspGI	CCWGG	2 cut(s)	231, 298
PspN4I	GGNNCC	2 cut(s)	167, 230
PspPI	GGNCC	2 cut(s)	235, 302
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	4 cut(s)	116, 158, 230, 482
RsaNI	GTAC	4 cut(s)	115, 157, 229, 481
RseI	CAYNNNNRTG	1 cut(s)	545
SatI	GCNGC	5 cut(s)	92, 95, 337, 369, 551
Sau3AI	GATC	3 cut(s)	35, 64, 351
Sau96I	GGNCC	2 cut(s)	235, 302
ScaI	AGTACT	1 cut(s)	158
SchI	GAGTC	3 cut(s)	128, 438, 446
ScrFI	CCNGG	2 cut(s)	233, 300
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	1 cut(s)	334
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	545
SmlI	CTYRAG	3 cut(s)	160, 264, 456
SmoI	CTYRAG	3 cut(s)	160, 264, 456
Sse9I	AATT	2 cut(s)	239, 474
SseBI	AGGCCT	1 cut(s)	175
SsiI	CCGC	3 cut(s)	29, 95, 317
StuI	AGGCCT	1 cut(s)	175
StyD4I	CCNGG	2 cut(s)	231, 298
StyI	CCWWGG	2 cut(s)	252, 462
TasI	AATT	2 cut(s)	239, 474
TatI	WGTACW	1 cut(s)	156
TauI	GCSGC	1 cut(s)	97
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	120
TseI	GCWGC	4 cut(s)	91, 336, 368, 550
Tsp45I	GTSAC	1 cut(s)	120
TspDTI	ATGAA	2 cut(s)	390, 527
TspGWI	ACGGA	1 cut(s)	468
TspRI	CASTG	1 cut(s)	354
VneI	GTGCAC	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	474
XmiI	GTMKAC	1 cut(s)	5
ZrmI	AGTACT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.