Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0010649

Physical Location & Seq

Genomic Coordinates Reverse (-)

24701512 .. 24705633

Gene Structure 4122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG238300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCGAGCAACAAAGGAAAAGATGTAGCAGAAGCATCGTCTTCTTCGGCTAATATTTCTGCTTCTGCTGCTGGCGACGATCATCAACAACAGCAGAAGCAGCCGCCGGCTCAGCTGAGCCGGTACGAGTCACAGAAGAGGAGGGATTGGAACACATTCGGGCAGTACTTGAGGAACCAGAGACCCCCGGTCGCTCTTTCGCAGAGCAACTCCAACCATGTGCTCGATTTCCTCAGGTACTTGGACCAATTTGGGAAGACCAAGGTGCACTTACAAGGGTGCGTGTTCTTCGGGCAGCCCGAACCTCCCGGACCTTGCACCTGTCCGCTCAGGCAAGCTTGGGGCAGCCTAGATGCACTGATCGGACGGCTCAGAGCTGCATATGAAGAGAATGGTGGGTTGCCTGAAACTAACCCATTTGCAAGTGGAGCTATAAGAGTGTATCTGCGTGAAGTGAGAGACTCTCAGGCCAAGGCAAGAGGGATTCCGTACAAGAAGAAGAAAAAGAAGAGGAATCTGATCAAGGCCAACCATGATAACAGTAGTAATCCAAACTTCACCACCATGCAGCAGCGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

193

Amino Acids

21.58

Weight (kDa)

9.93

Isoelectric Point (pI)

58.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	30 - 154	2.4e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16910 AT1G78815
fragaria_vesca	FvH4_3g18340 FvH4_3g18340
malus_domestica	MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica	Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis	pycom03g18980 pycom11g23180
rosa_chinensis	RchiOBHm_Chr5g0030991
rosa_laevigata	RLG00000033279
rosa_multiflora	Rmu_sc0001974.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049260
rosa_rugosa	Rorug05G0122100
rosa_samantha	Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana	Rw5G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	328
AciI	CCGC	2 cut(s)	104, 326
AfaI	GTAC	4 cut(s)	125, 167, 239, 491
AhdI	GACNNNNNGTC	1 cut(s)	188
AluBI	AGCT	4 cut(s)	115, 338, 377, 431
AluI	AGCT	4 cut(s)	115, 338, 377, 431
Alw21I	GWGCWC	2 cut(s)	225, 270
Alw26I	GTCTC	2 cut(s)	175, 453
Alw44I	GTGCAC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	468, 525
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	7 cut(s)	68, 100, 295, 345, 377, 568, 571
Asp700I	GAANNNNTTC	1 cut(s)	155
AspS9I	GGNCC	2 cut(s)	244, 311
AsuC2I	CCSGG	2 cut(s)	188, 309
AsuHPI	GGTGA	1 cut(s)	550
AvaII	GGWCC	2 cut(s)	244, 311
AxyI	CCTNAGG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	270
BbsI	GAAGAC	2 cut(s)	33, 263
Bbv12I	GWGCWC	2 cut(s)	225, 270
BbvI	GCAGC	5 cut(s)	55, 112, 307, 357, 364
BceAI	ACGGC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BclI	TGATCA	1 cut(s)	519
BcnI	CCSGG	2 cut(s)	188, 309
BcoDI	GTCTC	2 cut(s)	175, 453
BfaI	CTAG	1 cut(s)	350
BisI	GCNGC	8 cut(s)	69, 101, 104, 296, 346, 378, 569, 572
BlpI	GCTNAGC	2 cut(s)	111, 116
BlsI	GCNGC	8 cut(s)	70, 102, 105, 297, 347, 379, 570, 573
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	2 cut(s)	188, 309
Bme18I	GGWCC	2 cut(s)	244, 311
BmeRI	GACNNNNNGTC	1 cut(s)	188
BmgT120I	GGNCC	2 cut(s)	244, 311
BmiI	GGNNCC	1 cut(s)	176
BmrFI	CCNGG	2 cut(s)	188, 309
BmsI	GCATC	2 cut(s)	44, 343
BpiI	GAAGAC	2 cut(s)	33, 263
BplI	GAGNNNNNCTC	2 cut(s)	448, 480
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu1102I	GCTNAGC	2 cut(s)	111, 116
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	188, 309
BsaI	GGTCTC	1 cut(s)	175
BsaJI	CCNNGG	3 cut(s)	186, 261, 471
Bse118I	RCCGGY	2 cut(s)	106, 120
Bse21I	CCTNAGG	1 cut(s)	233
BseDI	CCNNGG	3 cut(s)	186, 261, 471
BseMII	CTCAG	6 cut(s)	107, 125, 247, 343, 385, 479
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	5 cut(s)	55, 112, 307, 357, 364
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	2 cut(s)	470, 527
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	225, 270
BsiSI	CCGG	4 cut(s)	107, 121, 188, 309
BsmAI	GTCTC	2 cut(s)	175, 453
BsnI	GGCC	2 cut(s)	470, 527
Bso31I	GGTCTC	1 cut(s)	175
Bsp1286I	GDGCHC	2 cut(s)	225, 270
Bsp143I	GATC	4 cut(s)	79, 360, 519, 575
Bsp1720I	GCTNAGC	2 cut(s)	111, 116
BspACI	CCGC	2 cut(s)	104, 326
BspANI	GGCC	2 cut(s)	470, 527
BspCNI	CTCAG	6 cut(s)	108, 124, 246, 342, 384, 478
BspLI	GGNNCC	1 cut(s)	176
BspTNI	GGTCTC	1 cut(s)	175
BsrBI	CCGCTC	1 cut(s)	328
BsrFI	RCCGGY	2 cut(s)	106, 120
BssAI	RCCGGY	2 cut(s)	106, 120
BssECI	CCNNGG	3 cut(s)	186, 261, 471
BssMI	GATC	4 cut(s)	79, 360, 519, 575
BssT1I	CCWWGG	2 cut(s)	261, 471
Bst4CI	ACNGT	1 cut(s)	542
Bst6I	CTCTTC	3 cut(s)	131, 381, 503
BstC8I	GCNNGC	3 cut(s)	73, 108, 336
BstDEI	CTNAG	6 cut(s)	111, 116, 233, 329, 371, 465
BstKTI	GATC	4 cut(s)	82, 363, 522, 578
BstMAI	GTCTC	2 cut(s)	175, 453
BstMBI	GATC	4 cut(s)	79, 360, 519, 575
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 100, 112, 428
BstSCI	CCNGG	2 cut(s)	186, 307
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	5 cut(s)	55, 112, 307, 357, 364
BstV2I	GAAGAC	2 cut(s)	33, 263
Bsu36I	CCTNAGG	1 cut(s)	233
BsuRI	GGCC	2 cut(s)	470, 527
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	3 cut(s)	73, 108, 336
Cfr10I	RCCGGY	2 cut(s)	106, 120
Cfr13I	GGNCC	2 cut(s)	244, 311
Csp6I	GTAC	4 cut(s)	124, 166, 238, 490
CviAII	CATG	3 cut(s)	218, 533, 565
CviQI	GTAC	4 cut(s)	124, 166, 238, 490
DdeI	CTNAG	6 cut(s)	111, 116, 233, 329, 371, 465
DpnI	GATC	4 cut(s)	81, 362, 521, 577
DpnII	GATC	4 cut(s)	79, 360, 519, 575
DriI	GACNNNNNGTC	1 cut(s)	188
Eam1104I	CTCTTC	3 cut(s)	131, 381, 503
Eam1105I	GACNNNNNGTC	1 cut(s)	188
EarI	CTCTTC	3 cut(s)	131, 381, 503
Eco130I	CCWWGG	2 cut(s)	261, 471
Eco31I	GGTCTC	1 cut(s)	175
Eco47I	GGWCC	2 cut(s)	244, 311
Eco81I	CCTNAGG	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	261, 471
ErhI	CCWWGG	2 cut(s)	261, 471
FaeI	CATG	3 cut(s)	221, 536, 568
FaiI	YATR	6 cut(s)	219, 382, 384, 434, 534, 566
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	3 cut(s)	217, 532, 564
FauNDI	CATATG	1 cut(s)	382
FbaI	TGATCA	1 cut(s)	519
Fnu4HI	GCNGC	8 cut(s)	69, 101, 104, 296, 346, 378, 569, 572
Fsp4HI	GCNGC	8 cut(s)	69, 101, 104, 296, 346, 378, 569, 572
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	8 cut(s)	69, 101, 104, 296, 346, 378, 569, 572
HaeIII	GGCC	2 cut(s)	470, 527
HapII	CCGG	4 cut(s)	107, 121, 188, 309
Hin1II	CATG	3 cut(s)	221, 536, 568
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	4 cut(s)	128, 461, 484, 514
HpaII	CCGG	4 cut(s)	107, 121, 188, 309
HphI	GGTGA	1 cut(s)	550
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	365, 374, 519
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	542
HpyCH4V	TGCA	6 cut(s)	268, 318, 356, 380, 422, 568
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 100, 112, 428
HpyF3I	CTNAG	6 cut(s)	111, 116, 233, 329, 371, 465
Hsp92II	CATG	3 cut(s)	221, 536, 568
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	519
Kzo9I	GATC	4 cut(s)	79, 360, 519, 575
LmnI	GCTCC	1 cut(s)	428
Lsp1109I	GCAGC	5 cut(s)	55, 112, 307, 357, 364
LweI	GCATC	2 cut(s)	44, 343
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	4 cut(s)	81, 362, 521, 577
MbiI	CCGCTC	1 cut(s)	328
MboI	GATC	4 cut(s)	79, 360, 519, 575
MboII	GAAGA	9 cut(s)	33, 36, 148, 268, 280, 398, 508, 511, 520
MhlI	GDGCHC	2 cut(s)	225, 270
MluCI	AATT	1 cut(s)	248
MlyI	GAGTC	2 cut(s)	137, 455
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	7 cut(s)	132, 135, 165, 242, 315, 473, 504
MroNI	GCCGGC	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	580
MslI	CAYNNNNRTG	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	4 cut(s)	107, 121, 188, 309
MspR9I	CCNGG	2 cut(s)	188, 309
MwoI	GCNNNNNNNGC	4 cut(s)	68, 100, 112, 428
NaeI	GCCGGC	1 cut(s)	108
NciI	CCSGG	2 cut(s)	188, 309
NdeI	CATATG	1 cut(s)	382
NdeII	GATC	4 cut(s)	79, 360, 519, 575
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	3 cut(s)	221, 536, 568
NlaIV	GGNNCC	1 cut(s)	176
NmuCI	GTSAC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PdiI	GCCGGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	155
PfeI	GAWTC	2 cut(s)	484, 514
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	8 cut(s)	70, 102, 105, 297, 347, 379, 570, 573
PleI	GAGTC	2 cut(s)	136, 455
PpsI	GAGTC	2 cut(s)	136, 455
PspN4I	GGNNCC	1 cut(s)	176
PspPI	GGNCC	2 cut(s)	244, 311
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	4 cut(s)	125, 167, 239, 491
RsaNI	GTAC	4 cut(s)	124, 166, 238, 490
RseI	CAYNNNNRTG	1 cut(s)	563
SaqAI	TTAA	1 cut(s)	580
SatI	GCNGC	8 cut(s)	69, 101, 104, 296, 346, 378, 569, 572
Sau3AI	GATC	4 cut(s)	79, 360, 519, 575
Sau96I	GGNCC	2 cut(s)	244, 311
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	2 cut(s)	137, 455
ScrFI	CCNGG	2 cut(s)	188, 309
SduI	GDGCHC	2 cut(s)	225, 270
SetI	ASST	9 cut(s)	117, 239, 267, 307, 316, 323, 340, 379, 433
SfaNI	GCATC	2 cut(s)	44, 343
SinI	GGWCC	2 cut(s)	244, 311
SmiMI	CAYNNNNRTG	1 cut(s)	563
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	1 cut(s)	248
SsiI	CCGC	2 cut(s)	104, 326
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	186, 307
StyI	CCWWGG	2 cut(s)	261, 471
TaaI	ACNGT	1 cut(s)	542
TaqI	TCGA	2 cut(s)	5, 225
TasI	AATT	1 cut(s)	248
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	106
TfiI	GAWTC	2 cut(s)	484, 514
Tru1I	TTAA	1 cut(s)	580
Tru9I	TTAA	1 cut(s)	580
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	7 cut(s)	68, 100, 295, 345, 377, 568, 571
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	399
TspGWI	ACGGA	1 cut(s)	477
TspRI	CASTG	1 cut(s)	363
VneI	GTGCAC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	244, 311
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	1 cut(s)	350
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.