Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010649

Physical Location & Seq

Genomic Coordinates Reverse (-)

25226517 .. 25228895

Gene Structure 2379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033279

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCGAGCAACAAAGGAAAAGATGTAGCAGAAGCATCGTCTTCTTCGGCTAATAATTCTGCTTCTGCTGCTGGCGACGATCATCAACAACAGCAGAAGCAGCCGCCGGCTCAGCTGAGCCGGTACGAGTCACAGAAGAGGAGGGATTGGAACACCTTCGGGCAGTACTTGAGGAACCAGAGGCCCCCGGTCGCTCTTTCGCAGAGCAACTCCAACCATGTGCTCGATTTCCTCAGGTACCTGGACCAATTTGGGAAGACCAAGGTGCACTTACAAGGGTGCGTATTCTTCGGGCAGCCCGAACCTCCCGGACCTTGCACCTGTCCGCTCAGGCAAGCTTGGGGCAGCCTAGATGCACTGATCGGACGGCTCAGAGCTGCTTATGAAGAGAATGCAGCGATCTTAATCGATCCACCTCAACAATATATGGCGCCTAAACCCAAATGCACCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

152

Amino Acids

16.76

Weight (kDa)

8.96

Isoelectric Point (pI)

70.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	30 - 133	3e-55	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16910 AT1G78815
fragaria_vesca	FvH4_3g18340 FvH4_3g18340
malus_domestica	MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica	Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis	pycom03g18980 pycom11g23180
rosa_chinensis	RchiOBHm_Chr5g0030991
rosa_laevigata	RLG00000033279
rosa_multiflora	Rmu_sc0001974.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049260
rosa_rugosa	Rorug05G0122100
rosa_samantha	Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana	Rw5G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	237, 430
AccBSI	CCGCTC	1 cut(s)	328
AciI	CCGC	2 cut(s)	104, 326
AclWI	GGATC	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	431
AfaI	GTAC	3 cut(s)	125, 167, 239
AjnI	CCWGG	1 cut(s)	240
AluBI	AGCT	3 cut(s)	115, 338, 377
AluI	AGCT	3 cut(s)	115, 338, 377
Alw21I	GWGCWC	2 cut(s)	225, 270
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	404
AoxI	GGCC	1 cut(s)	182
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	6 cut(s)	68, 100, 295, 345, 377, 395
Asp700I	GAANNNNTTC	1 cut(s)	155
Asp718I	GGTACC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	433
AspS9I	GGNCC	3 cut(s)	183, 244, 311
AsuC2I	CCSGG	2 cut(s)	188, 309
AvaII	GGWCC	2 cut(s)	244, 311
AxyI	CCTNAGG	1 cut(s)	233
BaeGI	GKGCMC	1 cut(s)	270
BanI	GGYRCC	2 cut(s)	237, 430
BbsI	GAAGAC	2 cut(s)	33, 263
Bbv12I	GWGCWC	2 cut(s)	225, 270
BbvI	GCAGC	6 cut(s)	55, 112, 307, 357, 364, 407
BceAI	ACGGC	1 cut(s)	383
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BciT130I	CCWGG	1 cut(s)	242
BcnI	CCSGG	2 cut(s)	188, 309
BfaI	CTAG	2 cut(s)	350, 454
BfoI	RGCGCY	1 cut(s)	434
BisI	GCNGC	7 cut(s)	69, 101, 104, 296, 346, 378, 396
BlpI	GCTNAGC	2 cut(s)	111, 116
BlsI	GCNGC	7 cut(s)	70, 102, 105, 297, 347, 379, 397
BmcAI	AGTACT	1 cut(s)	167
Bme1390I	CCNGG	3 cut(s)	188, 242, 309
Bme18I	GGWCC	2 cut(s)	244, 311
BmgT120I	GGNCC	3 cut(s)	183, 244, 311
BmiI	GGNNCC	4 cut(s)	176, 185, 239, 432
BmrFI	CCNGG	3 cut(s)	188, 242, 309
BmsI	GCATC	2 cut(s)	44, 343
BpiI	GAAGAC	2 cut(s)	33, 263
Bpu10I	CCTNAGC	1 cut(s)	329
Bpu1102I	GCTNAGC	2 cut(s)	111, 116
BpuEI	CTTGAG	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	188, 309
Bsa29I	ATCGAT	1 cut(s)	408
BsaBI	GATNNNNATC	1 cut(s)	404
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	2 cut(s)	186, 261
Bse118I	RCCGGY	2 cut(s)	106, 120
Bse21I	CCTNAGG	1 cut(s)	233
Bse8I	GATNNNNATC	1 cut(s)	404
BseBI	CCWGG	1 cut(s)	242
BseCI	ATCGAT	1 cut(s)	408
BseDI	CCNNGG	2 cut(s)	186, 261
BseJI	GATNNNNATC	1 cut(s)	404
BseMII	CTCAG	5 cut(s)	107, 125, 247, 343, 385
BseRI	GAGGAG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	6 cut(s)	55, 112, 307, 357, 364, 407
Bsh1285I	CGRYCG	1 cut(s)	192
BshFI	GGCC	1 cut(s)	184
BshNI	GGYRCC	2 cut(s)	237, 430
BshVI	ATCGAT	1 cut(s)	408
BsiEI	CGRYCG	1 cut(s)	192
BsiHKAI	GWGCWC	2 cut(s)	225, 270
BsiSI	CCGG	4 cut(s)	107, 121, 188, 309
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	184
Bsp1286I	GDGCHC	2 cut(s)	225, 270
Bsp143I	GATC	4 cut(s)	79, 360, 399, 409
Bsp1720I	GCTNAGC	2 cut(s)	111, 116
BspACI	CCGC	2 cut(s)	104, 326
BspANI	GGCC	1 cut(s)	184
BspCNI	CTCAG	5 cut(s)	108, 124, 246, 342, 384
BspDI	ATCGAT	1 cut(s)	408
BspLI	GGNNCC	4 cut(s)	176, 185, 239, 432
BspPI	GGATC	1 cut(s)	404
BspT107I	GGYRCC	2 cut(s)	237, 430
BsrBI	CCGCTC	1 cut(s)	328
BsrFI	RCCGGY	2 cut(s)	106, 120
BssAI	RCCGGY	2 cut(s)	106, 120
BssECI	CCNNGG	2 cut(s)	186, 261
BssMI	GATC	4 cut(s)	79, 360, 399, 409
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	242
Bst6I	CTCTTC	2 cut(s)	131, 381
BstACI	GRCGYC	1 cut(s)	431
BstC8I	GCNNGC	3 cut(s)	73, 108, 336
BstDEI	CTNAG	5 cut(s)	111, 116, 233, 329, 371
BstH2I	RGCGCY	1 cut(s)	434
BstHHI	GCGC	1 cut(s)	433
BstKTI	GATC	4 cut(s)	82, 363, 402, 412
BstMBI	GATC	4 cut(s)	79, 360, 399, 409
BstMCI	CGRYCG	1 cut(s)	192
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 100, 112
BstNI	CCWGG	1 cut(s)	242
BstSCI	CCNGG	3 cut(s)	186, 240, 307
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	6 cut(s)	55, 112, 307, 357, 364, 407
BstV2I	GAAGAC	2 cut(s)	33, 263
Bsu15I	ATCGAT	1 cut(s)	408
Bsu36I	CCTNAGG	1 cut(s)	233
BsuRI	GGCC	1 cut(s)	184
BsuTUI	ATCGAT	1 cut(s)	408
BtsIMutI	CAGTG	1 cut(s)	356
Cac8I	GCNNGC	3 cut(s)	73, 108, 336
CfoI	GCGC	1 cut(s)	433
Cfr10I	RCCGGY	2 cut(s)	106, 120
Cfr13I	GGNCC	3 cut(s)	183, 244, 311
ClaI	ATCGAT	1 cut(s)	408
Csp6I	GTAC	3 cut(s)	124, 166, 238
CviAII	CATG	1 cut(s)	218
CviQI	GTAC	3 cut(s)	124, 166, 238
DdeI	CTNAG	5 cut(s)	111, 116, 233, 329, 371
DinI	GGCGCC	1 cut(s)	432
DpnI	GATC	4 cut(s)	81, 362, 401, 411
DpnII	GATC	4 cut(s)	79, 360, 399, 409
Eam1104I	CTCTTC	2 cut(s)	131, 381
EarI	CTCTTC	2 cut(s)	131, 381
Eco130I	CCWWGG	1 cut(s)	261
Eco47I	GGWCC	2 cut(s)	244, 311
Eco81I	CCTNAGG	1 cut(s)	233
EcoO109I	RGGNCCY	1 cut(s)	183
EcoRII	CCWGG	1 cut(s)	240
EcoT14I	CCWWGG	1 cut(s)	261
EgeI	GGCGCC	1 cut(s)	432
EheI	GGCGCC	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	1 cut(s)	221
FaiI	YATR	4 cut(s)	219, 384, 426, 428
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	1 cut(s)	217
Fnu4HI	GCNGC	7 cut(s)	69, 101, 104, 296, 346, 378, 396
Fsp4HI	GCNGC	7 cut(s)	69, 101, 104, 296, 346, 378, 396
FspBI	CTAG	2 cut(s)	350, 454
GlaI	GCGC	1 cut(s)	432
GluI	GCNGC	7 cut(s)	69, 101, 104, 296, 346, 378, 396
HaeII	RGCGCY	1 cut(s)	434
HaeIII	GGCC	1 cut(s)	184
HapII	CCGG	4 cut(s)	107, 121, 188, 309
HhaI	GCGC	1 cut(s)	433
Hin1I	GRCGYC	1 cut(s)	431
Hin1II	CATG	1 cut(s)	221
Hin6I	GCGC	1 cut(s)	431
HinP1I	GCGC	1 cut(s)	431
HindIII	AAGCTT	1 cut(s)	336
HinfI	GANTC	1 cut(s)	128
HpaII	CCGG	4 cut(s)	107, 121, 188, 309
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	365, 374
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	166
HpyCH4V	TGCA	5 cut(s)	268, 318, 356, 395, 447
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 100, 112
HpyF3I	CTNAG	5 cut(s)	111, 116, 233, 329, 371
Hsp92I	GRCGYC	1 cut(s)	431
Hsp92II	CATG	1 cut(s)	221
HspAI	GCGC	1 cut(s)	431
KasI	GGCGCC	1 cut(s)	430
KpnI	GGTACC	1 cut(s)	241
KroI	GCCGGC	1 cut(s)	106
KroNI	GCCGGC	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	79, 360, 399, 409
Lsp1109I	GCAGC	6 cut(s)	55, 112, 307, 357, 364, 407
LweI	GCATC	2 cut(s)	44, 343
MaeI	CTAG	2 cut(s)	350, 454
MaeIII	GTNAC	1 cut(s)	129
MalI	GATC	4 cut(s)	81, 362, 401, 411
MbiI	CCGCTC	1 cut(s)	328
MboI	GATC	4 cut(s)	79, 360, 399, 409
MboII	GAAGA	6 cut(s)	33, 36, 148, 268, 280, 398
MhlI	GDGCHC	2 cut(s)	225, 270
MluCI	AATT	2 cut(s)	55, 248
Mly113I	GGCGCC	1 cut(s)	431
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	7 cut(s)	132, 135, 165, 174, 242, 315, 426
MroNI	GCCGGC	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	155
MseI	TTAA	1 cut(s)	404
MspA1I	CMGCKG	1 cut(s)	115
MspI	CCGG	4 cut(s)	107, 121, 188, 309
MspR9I	CCNGG	3 cut(s)	188, 242, 309
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	68, 100, 112
NaeI	GCCGGC	1 cut(s)	108
NarI	GGCGCC	1 cut(s)	431
NciI	CCSGG	2 cut(s)	188, 309
NdeII	GATC	4 cut(s)	79, 360, 399, 409
NgoMIV	GCCGGC	1 cut(s)	106
NlaIII	CATG	1 cut(s)	221
NlaIV	GGNNCC	4 cut(s)	176, 185, 239, 432
NmuCI	GTSAC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	297
PctI	GAATGC	1 cut(s)	397
PdiI	GCCGGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	155
PfoI	TCCNGGA	1 cut(s)	307
PkrI	GCNGC	7 cut(s)	70, 102, 105, 297, 347, 379, 397
PleI	GAGTC	1 cut(s)	136
PluTI	GGCGCC	1 cut(s)	434
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	240
PspN4I	GGNNCC	4 cut(s)	176, 185, 239, 432
PspPI	GGNCC	3 cut(s)	183, 244, 311
PvuII	CAGCTG	1 cut(s)	115
RsaI	GTAC	3 cut(s)	125, 167, 239
RsaNI	GTAC	3 cut(s)	124, 166, 238
SaqAI	TTAA	1 cut(s)	404
SatI	GCNGC	7 cut(s)	69, 101, 104, 296, 346, 378, 396
Sau3AI	GATC	4 cut(s)	79, 360, 399, 409
Sau96I	GGNCC	3 cut(s)	183, 244, 311
ScaI	AGTACT	1 cut(s)	167
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	3 cut(s)	188, 242, 309
SduI	GDGCHC	2 cut(s)	225, 270
SfaNI	GCATC	2 cut(s)	44, 343
SfoI	GGCGCC	1 cut(s)	432
SinI	GGWCC	2 cut(s)	244, 311
SmlI	CTYRAG	1 cut(s)	169
SmoI	CTYRAG	1 cut(s)	169
Sse9I	AATT	2 cut(s)	55, 248
SsiI	CCGC	2 cut(s)	104, 326
SspDI	GGCGCC	1 cut(s)	430
SspMI	CTAG	2 cut(s)	350, 454
StyD4I	CCNGG	3 cut(s)	186, 240, 307
StyI	CCWWGG	1 cut(s)	261
TaqI	TCGA	3 cut(s)	5, 225, 408
TasI	AATT	2 cut(s)	55, 248
TatI	WGTACW	1 cut(s)	165
TauI	GCSGC	1 cut(s)	106
Tru1I	TTAA	1 cut(s)	404
Tru9I	TTAA	1 cut(s)	404
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	1 cut(s)	129
TseI	GCWGC	6 cut(s)	68, 100, 295, 345, 377, 395
Tsp45I	GTSAC	1 cut(s)	129
TspDTI	ATGAA	1 cut(s)	399
TspRI	CASTG	1 cut(s)	363
VneI	GTGCAC	1 cut(s)	266
VpaK11BI	GGWCC	2 cut(s)	244, 311
XmnI	GAANNNNTTC	1 cut(s)	155
XspI	CTAG	2 cut(s)	350, 454
ZrmI	AGTACT	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.