Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010649

Physical Location & Seq

Genomic Coordinates Reverse (-)

11716399 .. 11719513

Gene Structure 3115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18340.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTCGAGCAACAAAGGAAAAGATGTAGCAGAAGCATCGTCTTCTTCTGCTAACAATTCTGCTGCTGCTGCTGTCGACGATCCTGATCAGCAGCAGCAGAAGCAGCCACCGGCTCAGCTGAGCCGGTACGAGTCGCAAAAGAGGAGGGATTGGAACACCTTCGGGCAGTACTTGAGGAACCAGAGACCCCCGGTGGCTCTTTCGCAGAGCAACTCCAGCCATGTGCTCGATTTCCTCAGGTACTTGGATCAATTTGGGAAGACCAAGGTGCACTTACAAGGGTGCGTCTTCTTTGGGCAGCCTGAACCTCCCGGACCTTGCACCTGTCCGCTCAGGCAAGCTTGGGGCAGCCTTGATGCACTGATCGGACGCCTCAGAGCTGCTTATGAAGAGAATGGTGGGTTGCCTGAATCAAACCCATTTGCAAGTGGAGCTATAAGAGTGTATCTGCGTGAAGTGAGAGACTCTCAGGCCAAGGCTAGAGGGATTCCTTACAAGAAGAAGAAAAAGAAGAGGAATCTGATCAAGGCCAACCATGATCACAGTAGTAATCCAAACTTCACCACCATGCAGCAGCGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006351 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0018130 GO:0019438 GO:0032502 GO:0032774 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0046483 GO:0048856 GO:0050896 GO:0071704 GO:0090304 GO:0090698 GO:0097659 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF640

Protein Analysis

195

Amino Acids

21.66

Weight (kDa)

9.85

Isoelectric Point (pI)

57.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALOG_dom	PF04852	31 - 155	5.3e-66	ALOG domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010649)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16910 AT1G78815
fragaria_vesca	FvH4_3g18340 FvH4_3g18340
malus_domestica	MD03G1242600.v1.1 MD11G1263200.v1.1
prunus_persica	Prupe.4G165300_v2.0.a1 Prupe.4G165300_v2.0.a1
pyrus_communis	pycom03g18980 pycom11g23180
rosa_chinensis	RchiOBHm_Chr5g0030991
rosa_laevigata	RLG00000033279
rosa_multiflora	Rmu_sc0001974.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049260
rosa_rugosa	Rorug05G0122100
rosa_samantha	Rh5AG215400 Rh5BG214400 Rh5CG238300 Rh5DG219000
rosa_wichuraiana	Rw5G019700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	331
AccI	GTMKAC	1 cut(s)	75
AciI	CCGC	1 cut(s)	329
AclWI	GGATC	2 cut(s)	74, 255
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	3 cut(s)	128, 170, 242
AluBI	AGCT	4 cut(s)	118, 341, 380, 434
AluI	AGCT	4 cut(s)	118, 341, 380, 434
Alw21I	GWGCWC	2 cut(s)	228, 273
Alw26I	GTCTC	2 cut(s)	178, 456
Alw44I	GTGCAC	1 cut(s)	269
AlwI	GGATC	2 cut(s)	74, 255
AoxI	GGCC	2 cut(s)	471, 528
ApaLI	GTGCAC	1 cut(s)	269
Asp700I	GAANNNNTTC	1 cut(s)	158
AspS9I	GGNCC	1 cut(s)	314
AsuC2I	CCSGG	2 cut(s)	191, 312
AsuHPI	GGTGA	1 cut(s)	553
AvaII	GGWCC	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	273
BbsI	GAAGAC	3 cut(s)	33, 266, 280
Bbv12I	GWGCWC	2 cut(s)	228, 273
BbvI	GCAGC	9 cut(s)	49, 52, 55, 103, 106, 115, 310, 360, 367
BcgI	CGANNNNNNTGC	2 cut(s)	18, 52
BclI	TGATCA	3 cut(s)	85, 522, 538
BcnI	CCSGG	2 cut(s)	191, 312
BcoDI	GTCTC	2 cut(s)	178, 456
BfaI	CTAG	1 cut(s)	480
BlpI	GCTNAGC	2 cut(s)	114, 119
BmcAI	AGTACT	1 cut(s)	170
Bme1390I	CCNGG	2 cut(s)	191, 312
Bme18I	GGWCC	1 cut(s)	314
BmgT120I	GGNCC	1 cut(s)	314
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	2 cut(s)	191, 312
BmsI	GCATC	2 cut(s)	44, 346
BpiI	GAAGAC	3 cut(s)	33, 266, 280
BplI	GAGNNNNNCTC	2 cut(s)	451, 483
BpmI	CTGGAG	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	332
Bpu1102I	GCTNAGC	2 cut(s)	114, 119
BpuEI	CTTGAG	1 cut(s)	193
BpuMI	CCSGG	2 cut(s)	191, 312
BsaBI	GATNNNNATC	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	370
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	3 cut(s)	189, 264, 474
Bse118I	RCCGGY	2 cut(s)	109, 123
Bse21I	CCTNAGG	1 cut(s)	236
Bse8I	GATNNNNATC	1 cut(s)	84
BseDI	CCNNGG	3 cut(s)	189, 264, 474
BseJI	GATNNNNATC	1 cut(s)	84
BseMII	CTCAG	6 cut(s)	110, 128, 250, 346, 388, 482
BseRI	GAGGAG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	273
BseXI	GCAGC	9 cut(s)	49, 52, 55, 103, 106, 115, 310, 360, 367
BshFI	GGCC	2 cut(s)	473, 530
BsiHKAI	GWGCWC	2 cut(s)	228, 273
BsiSI	CCGG	4 cut(s)	110, 124, 191, 312
BsmAI	GTCTC	2 cut(s)	178, 456
BsnI	GGCC	2 cut(s)	473, 530
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	2 cut(s)	228, 273
Bsp143I	GATC	7 cut(s)	79, 85, 247, 363, 522, 538, 578
Bsp1720I	GCTNAGC	2 cut(s)	114, 119
BspACI	CCGC	1 cut(s)	329
BspANI	GGCC	2 cut(s)	473, 530
BspCNI	CTCAG	6 cut(s)	111, 127, 249, 345, 387, 481
BspLI	GGNNCC	1 cut(s)	179
BspPI	GGATC	2 cut(s)	74, 255
BspTNI	GGTCTC	1 cut(s)	178
BsrBI	CCGCTC	1 cut(s)	331
BsrFI	RCCGGY	2 cut(s)	109, 123
BssAI	RCCGGY	2 cut(s)	109, 123
BssECI	CCNNGG	3 cut(s)	189, 264, 474
BssMI	GATC	7 cut(s)	79, 85, 247, 363, 522, 538, 578
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	2 cut(s)	264, 474
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	2 cut(s)	384, 506
BstACI	GRCGYC	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	339
BstDEI	CTNAG	6 cut(s)	114, 119, 236, 332, 374, 468
BstKTI	GATC	7 cut(s)	82, 88, 250, 366, 525, 541, 581
BstMAI	GTCTC	2 cut(s)	178, 456
BstMBI	GATC	7 cut(s)	79, 85, 247, 363, 522, 538, 578
BstMWI	GCNNNNNNNGC	5 cut(s)	68, 100, 103, 216, 431
BstSCI	CCNGG	2 cut(s)	189, 310
BstSLI	GKGCMC	1 cut(s)	273
BstV1I	GCAGC	9 cut(s)	49, 52, 55, 103, 106, 115, 310, 360, 367
BstV2I	GAAGAC	3 cut(s)	33, 266, 280
Bsu36I	CCTNAGG	1 cut(s)	236
BsuRI	GGCC	2 cut(s)	473, 530
BtsIMutI	CAGTG	1 cut(s)	359
Cac8I	GCNNGC	1 cut(s)	339
Cfr10I	RCCGGY	2 cut(s)	109, 123
Cfr13I	GGNCC	1 cut(s)	314
CseI	GACGC	2 cut(s)	274, 378
Csp6I	GTAC	3 cut(s)	127, 169, 241
CviAII	CATG	3 cut(s)	221, 536, 568
CviQI	GTAC	3 cut(s)	127, 169, 241
DdeI	CTNAG	6 cut(s)	114, 119, 236, 332, 374, 468
DpnI	GATC	7 cut(s)	81, 87, 249, 365, 524, 540, 580
DpnII	GATC	7 cut(s)	79, 85, 247, 363, 522, 538, 578
Eam1104I	CTCTTC	2 cut(s)	384, 506
EarI	CTCTTC	2 cut(s)	384, 506
Eco130I	CCWWGG	2 cut(s)	264, 474
Eco31I	GGTCTC	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	314
Eco81I	CCTNAGG	1 cut(s)	236
EcoT14I	CCWWGG	2 cut(s)	264, 474
ErhI	CCWWGG	2 cut(s)	264, 474
FaeI	CATG	3 cut(s)	224, 539, 571
FaiI	YATR	5 cut(s)	222, 387, 437, 537, 569
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	3 cut(s)	220, 535, 567
FbaI	TGATCA	3 cut(s)	85, 522, 538
FblI	GTMKAC	1 cut(s)	75
FspBI	CTAG	1 cut(s)	480
GsuI	CTGGAG	1 cut(s)	199
HaeIII	GGCC	2 cut(s)	473, 530
HapII	CCGG	4 cut(s)	110, 124, 191, 312
HgaI	GACGC	2 cut(s)	274, 378
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	3 cut(s)	224, 539, 571
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	339
HinfI	GANTC	5 cut(s)	131, 410, 464, 487, 517
HpaII	CCGG	4 cut(s)	110, 124, 191, 312
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	2 cut(s)	76, 271
Hpy188I	TCNGA	3 cut(s)	368, 377, 522
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	76, 271
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4V	TGCA	5 cut(s)	271, 321, 359, 425, 571
HpyF10VI	GCNNNNNNNGC	5 cut(s)	68, 100, 103, 216, 431
HpyF3I	CTNAG	6 cut(s)	114, 119, 236, 332, 374, 468
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	3 cut(s)	224, 539, 571
Ksp22I	TGATCA	3 cut(s)	85, 522, 538
Kzo9I	GATC	7 cut(s)	79, 85, 247, 363, 522, 538, 578
LmnI	GCTCC	1 cut(s)	431
Lsp1109I	GCAGC	9 cut(s)	49, 52, 55, 103, 106, 115, 310, 360, 367
LweI	GCATC	2 cut(s)	44, 346
MaeI	CTAG	1 cut(s)	480
MalI	GATC	7 cut(s)	81, 87, 249, 365, 524, 540, 580
MbiI	CCGCTC	1 cut(s)	331
MboI	GATC	7 cut(s)	79, 85, 247, 363, 522, 538, 578
MboII	GAAGA	8 cut(s)	33, 36, 271, 280, 401, 511, 514, 523
MhlI	GDGCHC	2 cut(s)	228, 273
MluCI	AATT	2 cut(s)	55, 251
MlyI	GAGTC	2 cut(s)	140, 458
MnlI	CCTC	8 cut(s)	135, 138, 168, 245, 318, 383, 476, 507
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	1 cut(s)	583
MslI	CAYNNNNRTG	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	4 cut(s)	110, 124, 191, 312
MspR9I	CCNGG	2 cut(s)	191, 312
MwoI	GCNNNNNNNGC	5 cut(s)	68, 100, 103, 216, 431
NciI	CCSGG	2 cut(s)	191, 312
NdeII	GATC	7 cut(s)	79, 85, 247, 363, 522, 538, 578
NlaIII	CATG	3 cut(s)	224, 539, 571
NlaIV	GGNNCC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	3 cut(s)	410, 487, 517
PfoI	TCCNGGA	1 cut(s)	310
PleI	GAGTC	2 cut(s)	139, 458
PpsI	GAGTC	2 cut(s)	139, 458
PspN4I	GGNNCC	1 cut(s)	179
PspPI	GGNCC	1 cut(s)	314
PvuII	CAGCTG	1 cut(s)	118
RsaI	GTAC	3 cut(s)	128, 170, 242
RsaNI	GTAC	3 cut(s)	127, 169, 241
RseI	CAYNNNNRTG	1 cut(s)	566
SalI	GTCGAC	1 cut(s)	74
SaqAI	TTAA	1 cut(s)	583
Sau3AI	GATC	7 cut(s)	79, 85, 247, 363, 522, 538, 578
Sau96I	GGNCC	1 cut(s)	314
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	2 cut(s)	140, 458
ScrFI	CCNGG	2 cut(s)	191, 312
SduI	GDGCHC	2 cut(s)	228, 273
SfaNI	GCATC	2 cut(s)	44, 346
SinI	GGWCC	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	566
SmlI	CTYRAG	1 cut(s)	172
SmoI	CTYRAG	1 cut(s)	172
Sse9I	AATT	2 cut(s)	55, 251
SsiI	CCGC	1 cut(s)	329
SspMI	CTAG	1 cut(s)	480
StyD4I	CCNGG	2 cut(s)	189, 310
StyI	CCWWGG	2 cut(s)	264, 474
TaaI	ACNGT	1 cut(s)	545
TaqI	TCGA	3 cut(s)	5, 75, 228
TasI	AATT	2 cut(s)	55, 251
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	3 cut(s)	410, 487, 517
Tru1I	TTAA	1 cut(s)	583
Tru9I	TTAA	1 cut(s)	583
TscAI	CASTG	1 cut(s)	366
TspDTI	ATGAA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	366
VneI	GTGCAC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	75
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	1 cut(s)	480
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.