AT1G16970

ATP-dependent DNA helicase 2 subunit

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
5800767 .. 5805811
5045 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G16970.1

Sequence Viewer

Length: 1866 bp
ATGGAATTGGACCCAGATGATGTTTTCAGAGATGAAGACGAAGACCCAGAAAACGATTTCTTTCAGGAAAAAGAGGCTTCCAAAGAATTTGTAGTCTATCTAATTGATGCTTCTCCCAAAATGTTCTGCTCTACTTGCCCCTCTGAGGAAGAGGACAAACAAGAAAGTCATTTTCACATTGCTGTTAGTTGCATTGCTCAGTCACTCAAGGCTCATATTATCAATCGGTCAAATGATGAAATAGCTATATGTTTCTTTAACACTCGTGAAAAGAAGAATCTTCAGGATCTAAATGGTGTTTATGTCTTTAATGTTCCAGAGAGGGATAGTATTGACCGTCCAACAGCGAGGCTGATTAAAGAATTCGATCTCATAGAAGAATCATTTGATAAGGAAATTGGCAGTCAAACTGGTATTGTCTCAGATTCTCGGGAGAATTCCCTTTATAGTGCTCTCTGGGTTGCACAAGCACTACTGCGCAAAGGATCTTTAAAGACAGCAGATAAACGCATGTTTCTATTCACTAATGAAGATGATCCTTTTGGGAGTATGAGGATCTCTGTTAAAGAGGATATGACGAGGACGACGTTGCAGAGAGCTAAGGATGCACAAGACCTTGGCATCTCAATCGAGCTTCTACCACTCAGTCAACCTGATAAGCAATTCAATATAACTCTCTTCTACAAGGATCTAATTGGATTAAACAGTGATGAACTTACGGAGTTCATGCCATCAGTTGGACAGAAATTAGAGGACATGAAGGACCAACTGAAGAAGCGTGTACTTGCCAAGAGAATAGCAAAAAGAATTACGTTTGTGATCTGTGATGGCTTGTCTATTGAACTGAATGGTTATGCTTTACTCCGTCCGGCTATTCCTGGCAGCATAACCTGGCTTGACTCTACAACTAATCTTCCTGTGAAGGTGGAAAGATCATATATCTGTACGGACACTGGAGCTATAATGCAAGATCCTATACAACGGATTCAGCCTTACAAAAATCAGAATATCATGTTTACTGTGGAAGAGCTATCCCAAGTAAAAAGAATCTCAACTGGACACTTAAGACTGCTGGGGTTCAAGCCACTTAGTTGCCTCAAAGATTATCACAATTTGAAGCCTTCTACATTTCTCTATCCAAGTGATAAGGAAGTTATAGGGAGCACTCGTGCATTCATTGCCTTGCATAGATCCATGATACAGCTTGAACGTTTTGCTGTTGCATTTTATGGCGGTACTACACCTCCGAGATTGGTTGCTCTTGTTGCTCAGGATGAAATCGAGAGTGATGGTGGTCAAGTGGAGCCACCAGGGATAAACATGATATATCTTCCATATGCTAATGATATTAGAGATATCGACGAGTTGCATTCAAAACCAGGTGTAGCTGCTCCTCGCGCATCAGATGATCAGCTTAAAAAAGCATCAGCTCTAATGCGACGTCTAGAGTTAAAAGACTTTTCGGTTTGCCAATTTGCTAATCCCGCTTTGCAGAGACACTATGCTATCTTACAAGCCATTGCACTGGATGAAAACGAGCTTCGTGAAACCAGAGATGAAACACTTCCTGACGAAGAAGGAATGAACAGACCTGCAGTTGTAAAAGCAATAGAACAATTTAAGCAGTCGATTTATGGCGATGACCCTGATGAAGAAAGTGACTCAGGGGCAAAGGAGAAATCAAAAAAGCGAAAAGCCGGTGACGCAGATGATGGAAAATATGACTATATAGAGCTTGCAAAAACCGGAAAGCTGAAGGACTTGACTGTGGTCGAACTGAAGACATATCTGACTGCCAACAATCTCCTCGTCAGCGGGAAGAAAGAAGTTCTGATCAATCGGATTCTGACTCACATTGGTAAATAA

Protein Analysis

621

Amino Acids

70.29

Weight (kDa)

5.15

Isoelectric Point (pI)

50.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ku_N PF03731 30 - 266 8.1e-67 Ku70/Ku80 N-terminal alpha/beta domain
Ku PF02735 275 - 473 8.7e-41 Ku70/Ku80 beta-barrel domain
Ku_C PF03730 486 - 569 8.9e-20 Ku70/Ku80 C-terminal arm
SAP PF02037 585 - 619 2.2e-08 SAP domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1444
Acc16I TGCGCA 1 cut(s) 479
Acc36I ACCTGC 1 cut(s) 1600
AccB7I CCANNNNNTGG 1 cut(s) 737
AccII CGCG 1 cut(s) 1398
AciI CCGC 3 cut(s) 1233, 1485, 1815
AclI AACGTT 1 cut(s) 1210
AclWI GGATC 7 cut(s) 294, 493, 530, 563, 696, 965, 1185
AcsI RAATTY 3 cut(s) 86, 362, 436
AcuI CTGAAG 4 cut(s) 266, 791, 1775, 1799
AcyI GRCGYC 1 cut(s) 1441
AfaI GTAC 3 cut(s) 783, 946, 1237
AfiI CCNNNNNNNGG 2 cut(s) 145, 737
AflII CTTAAG 1 cut(s) 1063
AgsI TTSAA 6 cut(s) 667, 842, 1081, 1117, 1208, 1374
AjnI CCWGG 4 cut(s) 877, 890, 1309, 1378
Alw21I GWGCWC 2 cut(s) 454, 1166
Alw26I GTCTC 2 cut(s) 424, 1489
AlwI GGATC 7 cut(s) 294, 493, 530, 563, 696, 965, 1185
Ama87I CYCGRG 1 cut(s) 429
ApeKI GCWGC 2 cut(s) 882, 1388
ApoI RAATTY 3 cut(s) 86, 362, 436
Asp700I GAANNNNTTC 1 cut(s) 1563
AspLEI GCGC 2 cut(s) 480, 1400
AspS9I GGNCC 2 cut(s) 10, 763
AsuHPI GGTGA 1 cut(s) 1712
AvaI CYCGRG 1 cut(s) 429
AvaII GGWCC 2 cut(s) 10, 763
BauI CACGAG 2 cut(s) 264, 1167
BbsI GAAGAC 3 cut(s) 42, 48, 1787
Bbv12I GWGCWC 2 cut(s) 454, 1166
BbvI GCAGC 2 cut(s) 894, 1375
BccI CCATC 4 cut(s) 739, 821, 1283, 1706
BcgI CGANNNNNNTGC 2 cut(s) 610, 644
BciT130I CCWGG 4 cut(s) 879, 892, 1311, 1380
BclI TGATCA 2 cut(s) 1408, 1833
BcoDI GTCTC 2 cut(s) 424, 1489
BfaI CTAG 1 cut(s) 1445
BfmI CTRYAG 1 cut(s) 1593
BfrI CTTAAG 1 cut(s) 1063
BfuAI ACCTGC 1 cut(s) 1600
BisI GCNGC 2 cut(s) 883, 1389
BlsI GCNGC 2 cut(s) 884, 1390
Bme1390I CCNGG 4 cut(s) 879, 892, 1311, 1380
Bme18I GGWCC 2 cut(s) 10, 763
BmeT110I CYCGRG 1 cut(s) 429
BmgT120I GGNCC 2 cut(s) 10, 763
BmiI GGNNCC 2 cut(s) 12, 1305
BmrFI CCNGG 4 cut(s) 879, 892, 1311, 1380
BmsI GCATC 5 cut(s) 97, 595, 630, 1409, 1433
BoxI GACNNNNGTC 1 cut(s) 1769
BpiI GAAGAC 3 cut(s) 42, 48, 1787
BpmI CTGGAG 1 cut(s) 975
Bpu10I CCTNAGC 2 cut(s) 600, 1269
BpuEI CTTGAG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 1441
BsaJI CCNNGG 2 cut(s) 616, 1310
BsaWI WCCGGW 1 cut(s) 1745
BsaXI ACNNNNNCTCC 4 cut(s) 1153, 1183, 1228, 1258
Bsc4I CCNNNNNNNGG 2 cut(s) 145, 737
Bse118I RCCGGY 1 cut(s) 1697
Bse1I ACTGG 4 cut(s) 415, 958, 1060, 1530
Bse3DI GCAATG 4 cut(s) 177, 192, 1176, 1518
BseBI CCWGG 4 cut(s) 879, 892, 1311, 1380
BseDI CCNNGG 2 cut(s) 616, 1310
BseGI GGATG 3 cut(s) 610, 1279, 1534
BseLI CCNNNNNNNGG 2 cut(s) 145, 737
BseMI GCAATG 4 cut(s) 177, 192, 1176, 1518
BseMII CTCAG 6 cut(s) 135, 212, 435, 658, 1283, 1677
BseNI ACTGG 4 cut(s) 415, 958, 1060, 1530
BseRI GAGGAG 2 cut(s) 1383, 1796
BseXI GCAGC 2 cut(s) 894, 1375
BseYI CCCAGC 1 cut(s) 1072
Bsh1236I CGCG 1 cut(s) 1398
BsiHKAI GWGCWC 2 cut(s) 454, 1166
BsiHKCI CYCGRG 1 cut(s) 429
BsiSI CCGG 3 cut(s) 869, 1698, 1746
BslI CCNNNNNNNGG 2 cut(s) 145, 737
BsmAI GTCTC 2 cut(s) 424, 1489
BsmI GAATGC 2 cut(s) 1172, 1369
BsoBI CYCGRG 1 cut(s) 429
Bsp1286I GDGCHC 2 cut(s) 454, 1166
BspACI CCGC 3 cut(s) 1233, 1485, 1815
BspCNI CTCAG 6 cut(s) 136, 211, 434, 657, 1282, 1676
BspFNI CGCG 1 cut(s) 1398
BspLI GGNNCC 2 cut(s) 12, 1305
BspMAI CTGCAG 1 cut(s) 1597
BspMI ACCTGC 1 cut(s) 1600
BspPI GGATC 7 cut(s) 294, 493, 530, 563, 696, 965, 1185
BspQI GCTCTTC 1 cut(s) 1020
BspTI CTTAAG 1 cut(s) 1063
BsrDI GCAATG 4 cut(s) 177, 192, 1176, 1518
BsrFI RCCGGY 1 cut(s) 1697
BsrI ACTGG 4 cut(s) 415, 958, 1060, 1530
BssAI RCCGGY 1 cut(s) 1697
BssECI CCNNGG 2 cut(s) 616, 1310
BssNI GRCGYC 1 cut(s) 1441
BssSI CACGAG 2 cut(s) 264, 1167
BssT1I CCWWGG 1 cut(s) 616
Bst2BI CACGAG 2 cut(s) 264, 1167
Bst2UI CCWGG 4 cut(s) 879, 892, 1311, 1380
Bst4CI ACNGT 4 cut(s) 338, 707, 1021, 1768
Bst6I CTCTTC 3 cut(s) 144, 683, 1020
BstACI GRCGYC 1 cut(s) 1441
BstAFI CTTAAG 1 cut(s) 1063
BstAPI GCANNNNNTGC 1 cut(s) 1178
BstC8I GCNNGC 1 cut(s) 1737
BstDEI CTNAG 8 cut(s) 144, 198, 421, 600, 644, 1088, 1269, 1663
BstF5I GGATG 3 cut(s) 610, 1279, 1534
BstFNI CGCG 1 cut(s) 1398
BstHHI GCGC 2 cut(s) 480, 1400
BstMAI GTCTC 2 cut(s) 424, 1489
BstMWI GCNNNNNNNGC 7 cut(s) 135, 605, 1178, 1265, 1397, 1484, 1703
BstNI CCWGG 4 cut(s) 879, 892, 1311, 1380
BstNSI RCATGY 1 cut(s) 514
BstPAI GACNNNNGTC 1 cut(s) 1769
BstSCI CCNGG 4 cut(s) 877, 890, 1309, 1378
BstSFI CTRYAG 1 cut(s) 1593
BstUI CGCG 1 cut(s) 1398
BstV1I GCAGC 2 cut(s) 894, 1375
BstV2I GAAGAC 3 cut(s) 42, 48, 1787
BstX2I RGATCY 6 cut(s) 286, 485, 555, 688, 970, 1190
BstXI CCANNNNNNTGG 1 cut(s) 1525
BstYI RGATCY 6 cut(s) 286, 485, 555, 688, 970, 1190
BtgZI GCGATG 1 cut(s) 1653
BtsCI GGATG 3 cut(s) 610, 1279, 1534
BtsIMutI CAGTG 3 cut(s) 712, 951, 1523
BveI ACCTGC 1 cut(s) 1600
Cac8I GCNNGC 1 cut(s) 1737
CfoI GCGC 2 cut(s) 480, 1400
Cfr10I RCCGGY 1 cut(s) 1697
Cfr13I GGNCC 2 cut(s) 10, 763
CseI GACGC 1 cut(s) 1712
CsiI ACCWGGT 1 cut(s) 1378
Csp6I GTAC 3 cut(s) 782, 945, 1236
CviAII CATG 6 cut(s) 511, 727, 757, 1012, 1195, 1321
CviQI GTAC 3 cut(s) 782, 945, 1236
DdeI CTNAG 8 cut(s) 144, 198, 421, 600, 644, 1088, 1269, 1663
DraI TTTAAA 1 cut(s) 492
Eam1104I CTCTTC 3 cut(s) 144, 683, 1020
EarI CTCTTC 3 cut(s) 144, 683, 1020
Eco130I CCWWGG 1 cut(s) 616
Eco32I GATATC 1 cut(s) 1357
Eco47I GGWCC 2 cut(s) 10, 763
Eco57I CTGAAG 4 cut(s) 266, 791, 1775, 1799
Eco88I CYCGRG 1 cut(s) 429
EcoRI GAATTC 2 cut(s) 362, 436
EcoRII CCWGG 4 cut(s) 877, 890, 1309, 1378
EcoRV GATATC 1 cut(s) 1357
EcoT14I CCWWGG 1 cut(s) 616
ErhI CCWWGG 1 cut(s) 616
FaeI CATG 6 cut(s) 514, 730, 760, 1015, 1198, 1324
FatI CATG 6 cut(s) 510, 726, 756, 1011, 1194, 1320
FauI CCCGC 2 cut(s) 1492, 1808
FauNDI CATATG 1 cut(s) 1336
FbaI TGATCA 2 cut(s) 1408, 1833
Fnu4HI GCNGC 2 cut(s) 883, 1389
FokI GGATG 3 cut(s) 617, 1286, 1541
Fsp4HI GCNGC 2 cut(s) 883, 1389
FspBI CTAG 1 cut(s) 1445
FspI TGCGCA 1 cut(s) 479
GlaI GCGC 2 cut(s) 479, 1399
GluI GCNGC 2 cut(s) 883, 1389
GsaI CCCAGC 1 cut(s) 1076
GsuI CTGGAG 1 cut(s) 975
HapII CCGG 3 cut(s) 869, 1698, 1746
HgaI GACGC 1 cut(s) 1712
HhaI GCGC 2 cut(s) 480, 1400
Hin1I GRCGYC 1 cut(s) 1441
Hin1II CATG 6 cut(s) 514, 730, 760, 1015, 1198, 1324
Hin6I GCGC 2 cut(s) 478, 1398
HinP1I GCGC 2 cut(s) 478, 1398
HincII GTYRAC 1 cut(s) 650
HindII GTYRAC 1 cut(s) 650
HinfI GANTC 9 cut(s) 277, 380, 425, 899, 985, 1047, 1661, 1843, 1849
HpaII CCGG 3 cut(s) 869, 1698, 1746
HphI GGTGA 1 cut(s) 1712
Hpy166II GTNNAC 3 cut(s) 650, 782, 1017
Hpy8I GTNNAC 3 cut(s) 650, 782, 1017
Hpy99I CGWCG 3 cut(s) 589, 1364, 1443
HpyAV CCTTC 5 cut(s) 754, 916, 1131, 1571, 1750
HpyCH4III ACNGT 4 cut(s) 338, 707, 1021, 1768
HpyCH4IV ACGT 4 cut(s) 587, 812, 1210, 1441
HpyF10VI GCNNNNNNNGC 7 cut(s) 135, 605, 1178, 1265, 1397, 1484, 1703
HpyF3I CTNAG 8 cut(s) 144, 198, 421, 600, 644, 1088, 1269, 1663
HpySE526I ACGT 4 cut(s) 587, 812, 1210, 1441
Hsp92I GRCGYC 1 cut(s) 1441
Hsp92II CATG 6 cut(s) 514, 730, 760, 1015, 1198, 1324
HspAI GCGC 2 cut(s) 478, 1398
Ksp22I TGATCA 2 cut(s) 1408, 1833
LguI GCTCTTC 1 cut(s) 1020
LmnI GCTCC 4 cut(s) 956, 1161, 1303, 1396
Lsp1109I GCAGC 2 cut(s) 894, 1375
LweI GCATC 5 cut(s) 97, 595, 630, 1409, 1433
MabI ACCWGGT 1 cut(s) 1378
MaeI CTAG 1 cut(s) 1445
MaeII ACGT 4 cut(s) 587, 812, 1210, 1441
MaeIII GTNAC 3 cut(s) 201, 1658, 1700
MflI RGATCY 6 cut(s) 286, 485, 555, 688, 970, 1190
MhlI GDGCHC 2 cut(s) 454, 1166
MlyI GAGTC 3 cut(s) 893, 1655, 1843
MmeI TCCRAC 2 cut(s) 365, 718
MroXI GAANNNNTTC 1 cut(s) 1563
MspA1I CMGCKG 1 cut(s) 1815
MspCI CTTAAG 1 cut(s) 1063
MspI CCGG 3 cut(s) 869, 1698, 1746
MspR9I CCNGG 4 cut(s) 879, 892, 1311, 1380
Mva1269I GAATGC 2 cut(s) 1172, 1369
MvaI CCWGG 4 cut(s) 879, 892, 1311, 1380
MvnI CGCG 1 cut(s) 1398
MwoI GCNNNNNNNGC 7 cut(s) 135, 605, 1178, 1265, 1397, 1484, 1703
NdeI CATATG 1 cut(s) 1336
NlaIII CATG 6 cut(s) 514, 730, 760, 1015, 1198, 1324
NlaIV GGNNCC 2 cut(s) 12, 1305
NmuCI GTSAC 3 cut(s) 201, 1658, 1700
NsbI TGCGCA 1 cut(s) 479
NspI RCATGY 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 1020
PcsI WCGNNNNNNNCGW 1 cut(s) 584
PctI GAATGC 2 cut(s) 1172, 1369
PdmI GAANNNNTTC 1 cut(s) 1563
PfeI GAWTC 6 cut(s) 277, 380, 425, 985, 1047, 1843
PflMI CCANNNNNTGG 1 cut(s) 737
PkrI GCNGC 2 cut(s) 884, 1390
PleI GAGTC 3 cut(s) 893, 1655, 1843
PpsI GAGTC 3 cut(s) 893, 1655, 1843
PshAI GACNNNNGTC 1 cut(s) 1769
Psp1406I AACGTT 1 cut(s) 1210
Psp6I CCWGG 4 cut(s) 877, 890, 1309, 1378
PspFI CCCAGC 1 cut(s) 1072
PspGI CCWGG 4 cut(s) 877, 890, 1309, 1378
PspN4I GGNNCC 2 cut(s) 12, 1305
PspPI GGNCC 2 cut(s) 10, 763
PstI CTGCAG 1 cut(s) 1597
PsuI RGATCY 6 cut(s) 286, 485, 555, 688, 970, 1190
RsaI GTAC 3 cut(s) 783, 946, 1237
RsaNI GTAC 3 cut(s) 782, 945, 1236
SapI GCTCTTC 1 cut(s) 1020
SatI GCNGC 2 cut(s) 883, 1389
Sau96I GGNCC 2 cut(s) 10, 763
SchI GAGTC 3 cut(s) 893, 1655, 1843
ScrFI CCNGG 4 cut(s) 879, 892, 1311, 1380
SduI GDGCHC 2 cut(s) 454, 1166
SexAI ACCWGGT 1 cut(s) 1378
SfaNI GCATC 5 cut(s) 97, 595, 630, 1409, 1433
SfcI CTRYAG 1 cut(s) 1593
SinI GGWCC 2 cut(s) 10, 763
SmlI CTYRAG 2 cut(s) 206, 1063
SmoI CTYRAG 2 cut(s) 206, 1063
SsiI CCGC 3 cut(s) 1233, 1485, 1815
SspMI CTAG 1 cut(s) 1445
StyD4I CCNGG 4 cut(s) 877, 890, 1309, 1378
StyI CCWWGG 1 cut(s) 616
TaaI ACNGT 4 cut(s) 338, 707, 1021, 1768
TaiI ACGT 4 cut(s) 590, 815, 1213, 1444
TaqI TCGA 6 cut(s) 366, 630, 1281, 1359, 1628, 1773
TaqII GACCGA 1 cut(s) 216
TatI WGTACW 1 cut(s) 781
TfiI GAWTC 6 cut(s) 277, 380, 425, 985, 1047, 1843
TscAI CASTG 3 cut(s) 712, 958, 1530
TseFI GTSAC 3 cut(s) 201, 1658, 1700
TseI GCWGC 2 cut(s) 882, 1388
Tsp45I GTSAC 3 cut(s) 201, 1658, 1700
TspGWI ACGGA 4 cut(s) 734, 854, 962, 997
TspRI CASTG 3 cut(s) 712, 958, 1530
Van91I CCANNNNNTGG 1 cut(s) 737
Vha464I CTTAAG 1 cut(s) 1063
VpaK11BI GGWCC 2 cut(s) 10, 763
XapI RAATTY 3 cut(s) 86, 362, 436
XbaI TCTAGA 1 cut(s) 1444
XceI RCATGY 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 1563
XspI CTAG 1 cut(s) 1445
ZraI GACGTC 1 cut(s) 1442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.