Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0010153

Physical Location & Seq

Genomic Coordinates Reverse (-)

28432704 .. 28444576

Gene Structure 11873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1851 bp

ATGGAATTTGACGCCGATGACATTTTCAGAGACGACGAAGACGACCCAGACAATGAACTCTATCAGGAAAGGGAATCCACCAAGGACCTCGTCGTCTACCTCGTTGATGCTTCCCCTAAAATGTTCTCCACCACTACTCCAGCCGGAGACGGGAAGGATGAAACTCACTTTCATGTTGCTATCAGTTGTATCTCCGAGTCTCTCAGGAAACAAATCATTAATGCCTCCTACGATGAAGTTGCCATATGCTTCTTCAATACCAGGGAAAAGAGAAACTTGCAAGATTTAAATGGTGTTTATGTGTTTAATGTTGCTGAGCGAGAGTATCTGGACAGGCCAACAGCAAGGCTGATAAAAGAAGTTAGTAATGTAGAAGAGTCATTTATGAGCAAAATTGGGAGTCAGTATGGTATTAACTCTGGGTCTCGAGAAAATTCTCTTTACAATGCCCTTTGGGTAGCCCAAGCACTTCTGCGTAAAGGATCTGCGAGGACAGCTGATAAGCGTGTTCTTTTATTTACAAATGAAGATGATCCATTTGGCAGTATTAAAGGAATCATAAAGACAGACATGATTAGAACCACATTGCAGCGGGCTAAAGATGCACAAGATCTTGGCATCTCAATTGAACTTCTTCCATTGTGTCACCCAGATAATGATTTCAATGTTTCGACTTTCTACTCCGATTTAGTTGGACTCACAGGTGATGAACTTGCTCAATTTATGCCAAAAGCGGGAGAAAAATTGGAAGATATGAAGGATCAGCTAAGAAAGCGAATGTTCAAGAAACGGATTGTTAGAAAAATCACTTTCTCAATTGCCAATGGACTTTCAATTCAACTCAGTTCATATGCTCTAATCCGTCCCACTGTTCCAGGAGCAATCACCTGGCTTGATTCGGTCACTAACCGTCCTTTGAAGGCCGAAAGATCTTTTGTTTGTGCTGATACTGGTGCACTGGTACAGGAATCTGTAAAACGGTTTCAACCCTACAAAACCGAAGATATCAAGTTCTCAGTGGAGGAACTTTCAGAGATCAAAAGAATTTCTACCGGACAACTTCGACTCCTTGGCTTCAAGCCTTTAAATTGCTTGAAAGACTATCACAACTTGAGGCCCTCAACCTTTGTGTTCCCTAGTGATCAGGAACTGATTGGTAGCACACGTGTTTTCATTGCACTACATAAATCCATGCTACGGCTAAAGCGTTTCGCAGTTGCATTTTATGGTAGTTCATCTCGTCCTCAACTGGTTGCTCTTGTTGCTCAAGATGAAATAATGAGTGCTGGTGGTCAGGTTGAGCCTCCGGGGATGCACATGATATATCTTCCATATTCCGATGACATTAGACACACTGAAGAGCTTCTTATGGGTTCAGATGCTGCAGCGTCTCATGCAAGTGATGATCAAATTAGCAAGGCTGCTGCTTTAATCAACCGTCTAGACTTGAAAGATTTCTCAGTTTTCCAATTTTCTAACCCTGCCCTGCAGAGACACTATGCAGTATTGCAGGCCCTGGCTCTGGATGAGGATGATATACCGGAAATTAAGGATGAAACTTTACCTGATGAGGAAGGCATGTCTAGACCAGGAGTTGTTAGAACAATAGAAGAATTCAAGCATTCCGTTTATGGAGAAAATTATGATGAGGAAAGTGAAGTTGGAAATGCCAAAGTAAGTGAGATCACCAAAAAGCGAAAAGCAGCTGCTGAAAATGCAGTTAAAGAGATTGCTAAGCATGACTGGGCTGACCTTGCAGATAACGGAAAGGTGAAACTAAAGTTGCTTTGTTATACTCCATTGCTCGTTGTTTTAGTTGCCAAGGGGTCTTGCTTATTAAACCCTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N SAP

Protein Analysis

616

Amino Acids

69.27

Weight (kDa)

5.31

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_N	PF03731	31 - 265	4.8e-52	Ku70/Ku80 N-terminal alpha/beta domain
Ku	PF02735	274 - 472	1.2e-37	Ku70/Ku80 beta-barrel domain
Ku_C	PF03730	486 - 557	2.7e-19	Ku70/Ku80 C-terminal arm

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16970
fragaria_vesca	FvH4_4g12150 FvH4_4g12150 FvH4_4g12150 FvH4_4g12150
malus_domestica	MD13G1278700.v1.1
prunus_persica	Prupe.1G178000_v2.0.a1 Prupe.1G178000_v2.0.a1
pyrus_communis	pycom13g29490
rosa_chinensis	RchiOBHm_Chr4g0409801
rosa_laevigata	RLG00000008521
rosa_multiflora	Rmu_sc0019800.1_g000001 Rmu_sc0042987.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354350
rosa_rugosa	Rorug04G0096600
rosa_samantha	Rh4AG158200 Rh4BG157900 Rh4CG168700 Rh4DG152800
rosa_wichuraiana	Rw0G017490 Rw4G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	2 cut(s)	592, 734
AclWI	GGATC	3 cut(s)	490, 527, 768
AcsI	RAATTY	4 cut(s)	5, 433, 1044, 1613
AcuI	CTGAAG	1 cut(s)	1377
AcvI	CACGTG	1 cut(s)	1166
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	963
AfiI	CCNNNNNNNGG	4 cut(s)	150, 734, 1197, 1522
AflIII	ACRYGT	2 cut(s)	1163, 1165
AjnI	CCWGG	5 cut(s)	260, 874, 887, 1515, 1588
AjuI	GAANNNNNNNTTGG	2 cut(s)	1644, 1676
AluBI	AGCT	4 cut(s)	497, 766, 1363, 1706
AluI	AGCT	4 cut(s)	497, 766, 1363, 1706
Alw21I	GWGCWC	1 cut(s)	958
Alw26I	GTCTC	6 cut(s)	24, 141, 204, 429, 1395, 1486
Alw44I	GTGCAC	1 cut(s)	954
AlwI	GGATC	3 cut(s)	490, 527, 768
AlwNI	CAGNNNCTG	4 cut(s)	1150, 1382, 1516, 1709
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	4 cut(s)	335, 921, 1115, 1512
ApaLI	GTGCAC	1 cut(s)	954
ApeKI	GCWGC	7 cut(s)	589, 1382, 1385, 1421, 1424, 1703, 1706
ApoI	RAATTY	4 cut(s)	5, 433, 1044, 1613
AseI	ATTAAT	1 cut(s)	219
Asp700I	GAANNNNTTC	3 cut(s)	633, 1362, 1454
AspS9I	GGNCC	3 cut(s)	85, 1116, 1513
AsuC2I	CCSGG	1 cut(s)	1308
AsuHPI	GGTGA	5 cut(s)	638, 716, 877, 1678, 1783
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	958
BbrPI	CACGTG	1 cut(s)	1166
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	958
BbvI	GCAGC	7 cut(s)	601, 1369, 1397, 1408, 1411, 1693, 1715
BceAI	ACGGC	1 cut(s)	1214
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	5 cut(s)	262, 876, 889, 1517, 1590
BclI	TGATCA	2 cut(s)	1141, 1405
BcnI	CCSGG	1 cut(s)	1308
BcoDI	GTCTC	6 cut(s)	24, 141, 204, 429, 1395, 1486
BfaI	CTAG	3 cut(s)	1137, 1442, 1584
BfmI	CTRYAG	2 cut(s)	1383, 1487
BglII	AGATCT	2 cut(s)	610, 929
BisI	GCNGC	7 cut(s)	590, 1383, 1386, 1422, 1425, 1704, 1707
BlpI	GCTNAGC	2 cut(s)	315, 1734
BlsI	GCNGC	7 cut(s)	591, 1384, 1387, 1423, 1426, 1705, 1708
Bme1390I	CCNGG	6 cut(s)	262, 876, 889, 1308, 1517, 1590
Bme18I	GGWCC	1 cut(s)	85
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	3 cut(s)	85, 1116, 1513
BmrFI	CCNGG	6 cut(s)	262, 876, 889, 1308, 1517, 1590
BmrI	ACTGGG	1 cut(s)	1753
BmsI	GCATC	5 cut(s)	97, 592, 627, 1302, 1369
BmuI	ACTGGG	1 cut(s)	1753
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	123
Bpu1102I	GCTNAGC	2 cut(s)	315, 1734
BpuEI	CTTGAG	2 cut(s)	1132, 1251
BpuMI	CCSGG	1 cut(s)	1308
BsaAI	YACGTR	1 cut(s)	1166
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	1 cut(s)	429
BsaJI	CCNNGG	7 cut(s)	81, 261, 1069, 1307, 1515, 1821, 1844
BsaWI	WCCGGW	2 cut(s)	1052, 1540
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 1050, 1080
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 734, 1197, 1522
Bse1I	ACTGG	4 cut(s)	955, 963, 1254, 1748
Bse3DI	GCAATG	3 cut(s)	584, 1173, 1799
BseBI	CCWGG	5 cut(s)	262, 876, 889, 1517, 1590
BseDI	CCNNGG	7 cut(s)	81, 261, 1069, 1307, 1515, 1821, 1844
BseGI	GGATG	5 cut(s)	163, 1317, 1531, 1537, 1558
BseLI	CCNNNNNNNGG	4 cut(s)	150, 734, 1197, 1522
BseMI	GCAATG	3 cut(s)	584, 1173, 1799
BseMII	CTCAG	5 cut(s)	217, 306, 856, 1029, 1473
BseNI	ACTGG	4 cut(s)	955, 963, 1254, 1748
BseSI	GKGCMC	1 cut(s)	958
BseXI	GCAGC	7 cut(s)	601, 1369, 1397, 1408, 1411, 1693, 1715
BshFI	GGCC	4 cut(s)	337, 923, 1117, 1514
BsiHKAI	GWGCWC	1 cut(s)	958
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	4 cut(s)	144, 1053, 1307, 1541
BslFI	GGGAC	1 cut(s)	849
BslI	CCNNNNNNNGG	4 cut(s)	150, 734, 1197, 1522
BsmAI	GTCTC	6 cut(s)	24, 141, 204, 429, 1395, 1486
BsmBI	CGTCTC	3 cut(s)	24, 141, 1395
BsmFI	GGGAC	1 cut(s)	849
BsmI	GAATGC	1 cut(s)	1621
BsnI	GGCC	4 cut(s)	337, 923, 1117, 1514
Bso31I	GGTCTC	1 cut(s)	429
BsoBI	CYCGRG	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	958
Bsp143I	GATC	9 cut(s)	482, 532, 610, 760, 929, 1035, 1141, 1405, 1683
Bsp1720I	GCTNAGC	2 cut(s)	315, 1734
BspACI	CCGC	2 cut(s)	592, 734
BspANI	GGCC	4 cut(s)	337, 923, 1117, 1514
BspCNI	CTCAG	5 cut(s)	216, 307, 855, 1028, 1472
BspMAI	CTGCAG	2 cut(s)	1387, 1491
BspPI	GGATC	3 cut(s)	490, 527, 768
BspQI	GCTCTTC	1 cut(s)	1353
BspTNI	GGTCTC	1 cut(s)	429
BsrDI	GCAATG	3 cut(s)	584, 1173, 1799
BsrI	ACTGG	4 cut(s)	955, 963, 1254, 1748
BssECI	CCNNGG	7 cut(s)	81, 261, 1069, 1307, 1515, 1821, 1844
BssMI	GATC	9 cut(s)	482, 532, 610, 760, 929, 1035, 1141, 1405, 1683
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	4 cut(s)	81, 1069, 1821, 1844
Bst2UI	CCWGG	5 cut(s)	262, 876, 889, 1517, 1590
Bst4CI	ACNGT	4 cut(s)	871, 911, 981, 1439
Bst6I	CTCTTC	2 cut(s)	369, 1353
BstACI	GRCGYC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	1166
BstC8I	GCNNGC	2 cut(s)	594, 1512
BstDEI	CTNAG	7 cut(s)	203, 315, 767, 842, 1015, 1459, 1734
BstF5I	GGATG	5 cut(s)	163, 1317, 1531, 1537, 1558
BstKTI	GATC	9 cut(s)	485, 535, 613, 763, 932, 1038, 1144, 1408, 1686
BstMAI	GTCTC	6 cut(s)	24, 141, 204, 429, 1395, 1486
BstMBI	GATC	9 cut(s)	482, 532, 610, 760, 929, 1035, 1141, 1405, 1683
BstMWI	GCNNNNNNNGC	7 cut(s)	494, 602, 772, 1262, 1394, 1715, 1754
BstNI	CCWGG	5 cut(s)	262, 876, 889, 1517, 1590
BstNSI	RCATGY	1 cut(s)	1582
BstSCI	CCNGG	6 cut(s)	260, 874, 887, 1306, 1515, 1588
BstSFI	CTRYAG	2 cut(s)	1383, 1487
BstSLI	GKGCMC	1 cut(s)	958
BstV1I	GCAGC	7 cut(s)	601, 1369, 1397, 1408, 1411, 1693, 1715
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	3 cut(s)	482, 610, 929
BstYI	RGATCY	3 cut(s)	482, 610, 929
BsuRI	GGCC	4 cut(s)	337, 923, 1117, 1514
BtsCI	GGATG	5 cut(s)	163, 1317, 1531, 1537, 1558
BtsIMutI	CAGTG	4 cut(s)	867, 956, 1023, 1353
Cac8I	GCNNGC	2 cut(s)	594, 1512
CaiI	CAGNNNCTG	4 cut(s)	1150, 1382, 1516, 1709
Cfr13I	GGNCC	3 cut(s)	85, 1116, 1513
CseI	GACGC	2 cut(s)	20, 1377
Csp6I	GTAC	1 cut(s)	962
CviAII	CATG	7 cut(s)	173, 571, 1192, 1318, 1394, 1579, 1739
CviQI	GTAC	1 cut(s)	962
DdeI	CTNAG	7 cut(s)	203, 315, 767, 842, 1015, 1459, 1734
DpnI	GATC	9 cut(s)	484, 534, 612, 762, 931, 1037, 1143, 1407, 1685
DpnII	GATC	9 cut(s)	482, 532, 610, 760, 929, 1035, 1141, 1405, 1683
DraI	TTTAAA	2 cut(s)	288, 1086
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	2 cut(s)	369, 1353
EarI	CTCTTC	2 cut(s)	369, 1353
Eco130I	CCWWGG	4 cut(s)	81, 1069, 1821, 1844
Eco31I	GGTCTC	1 cut(s)	429
Eco32I	GATATC	1 cut(s)	1006
Eco47I	GGWCC	1 cut(s)	85
Eco57I	CTGAAG	1 cut(s)	1377
Eco72I	CACGTG	1 cut(s)	1166
Eco88I	CYCGRG	1 cut(s)	426
EcoO109I	RGGNCCY	3 cut(s)	85, 1116, 1513
EcoRI	GAATTC	1 cut(s)	1613
EcoRII	CCWGG	5 cut(s)	260, 874, 887, 1515, 1588
EcoRV	GATATC	1 cut(s)	1006
EcoT14I	CCWWGG	4 cut(s)	81, 1069, 1821, 1844
ErhI	CCWWGG	4 cut(s)	81, 1069, 1821, 1844
Esp3I	CGTCTC	3 cut(s)	24, 141, 1395
FaeI	CATG	7 cut(s)	176, 574, 1195, 1321, 1397, 1582, 1742
FalI	AAGNNNNNCTT	4 cut(s)	260, 292, 1350, 1382
FaqI	GGGAC	1 cut(s)	849
FatI	CATG	7 cut(s)	172, 570, 1191, 1317, 1393, 1578, 1738
FauI	CCCGC	2 cut(s)	585, 727
FauNDI	CATATG	2 cut(s)	245, 850
FbaI	TGATCA	2 cut(s)	1141, 1405
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	7 cut(s)	590, 1383, 1386, 1422, 1425, 1704, 1707
FokI	GGATG	5 cut(s)	170, 1324, 1538, 1544, 1565
Fsp4HI	GCNGC	7 cut(s)	590, 1383, 1386, 1422, 1425, 1704, 1707
FspBI	CTAG	3 cut(s)	1137, 1442, 1584
GluI	GCNGC	7 cut(s)	590, 1383, 1386, 1422, 1425, 1704, 1707
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	337, 923, 1117, 1514
HapII	CCGG	4 cut(s)	144, 1053, 1307, 1541
HgaI	GACGC	2 cut(s)	20, 1377
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	7 cut(s)	176, 574, 1195, 1321, 1397, 1582, 1742
HinfI	GANTC	9 cut(s)	74, 197, 377, 400, 555, 696, 896, 968, 1065
HpaII	CCGG	4 cut(s)	144, 1053, 1307, 1541
HphI	GGTGA	5 cut(s)	638, 716, 877, 1678, 1783
Hpy166II	GTNNAC	2 cut(s)	97, 956
Hpy188I	TCNGA	6 cut(s)	29, 196, 685, 1033, 1339, 1378
Hpy8I	GTNNAC	2 cut(s)	97, 956
Hpy99I	CGWCG	2 cut(s)	38, 95
HpyAV	CCTTC	4 cut(s)	148, 751, 913, 1568
HpyCH4III	ACNGT	4 cut(s)	871, 911, 981, 1439
HpyCH4IV	ACGT	1 cut(s)	1165
HpyF10VI	GCNNNNNNNGC	7 cut(s)	494, 602, 772, 1262, 1394, 1715, 1754
HpyF3I	CTNAG	7 cut(s)	203, 315, 767, 842, 1015, 1459, 1734
HpySE526I	ACGT	1 cut(s)	1165
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	7 cut(s)	176, 574, 1195, 1321, 1397, 1582, 1742
Ksp22I	TGATCA	2 cut(s)	1141, 1405
Kzo9I	GATC	9 cut(s)	482, 532, 610, 760, 929, 1035, 1141, 1405, 1683
LguI	GCTCTTC	1 cut(s)	1353
LmnI	GCTCC	1 cut(s)	878
Lsp1109I	GCAGC	7 cut(s)	601, 1369, 1397, 1408, 1411, 1693, 1715
LweI	GCATC	5 cut(s)	97, 592, 627, 1302, 1369
MaeI	CTAG	3 cut(s)	1137, 1442, 1584
MaeII	ACGT	1 cut(s)	1165
MaeIII	GTNAC	2 cut(s)	644, 901
MalI	GATC	9 cut(s)	484, 534, 612, 762, 931, 1037, 1143, 1407, 1685
MboI	GATC	9 cut(s)	482, 532, 610, 760, 929, 1035, 1141, 1405, 1683
MfeI	CAATTG	2 cut(s)	624, 816
MflI	RGATCY	3 cut(s)	482, 610, 929
MhlI	GDGCHC	1 cut(s)	958
MlyI	GAGTC	5 cut(s)	206, 386, 409, 690, 1059
MmeI	TCCRAC	2 cut(s)	673, 1642
MroXI	GAANNNNTTC	3 cut(s)	633, 1362, 1454
MslI	CAYNNNNRTG	2 cut(s)	171, 1398
MspA1I	CMGCKG	3 cut(s)	497, 592, 1706
MspI	CCGG	4 cut(s)	144, 1053, 1307, 1541
MspR9I	CCNGG	6 cut(s)	262, 876, 889, 1308, 1517, 1590
MunI	CAATTG	2 cut(s)	624, 816
Mva1269I	GAATGC	1 cut(s)	1621
MvaI	CCWGG	5 cut(s)	262, 876, 889, 1517, 1590
MwoI	GCNNNNNNNGC	7 cut(s)	494, 602, 772, 1262, 1394, 1715, 1754
NciI	CCSGG	1 cut(s)	1308
NdeI	CATATG	2 cut(s)	245, 850
NdeII	GATC	9 cut(s)	482, 532, 610, 760, 929, 1035, 1141, 1405, 1683
NlaIII	CATG	7 cut(s)	176, 574, 1195, 1321, 1397, 1582, 1742
NmuCI	GTSAC	2 cut(s)	644, 901
NspI	RCATGY	1 cut(s)	1582
PaeR7I	CTCGAG	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	1353
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 99, 1204
PctI	GAATGC	1 cut(s)	1621
PdmI	GAANNNNTTC	3 cut(s)	633, 1362, 1454
PfeI	GAWTC	4 cut(s)	74, 555, 896, 968
PflFI	GACNNNGTC	1 cut(s)	89
PfoI	TCCNGGA	1 cut(s)	874
PkrI	GCNGC	7 cut(s)	591, 1384, 1387, 1423, 1426, 1705, 1708
PleI	GAGTC	5 cut(s)	205, 385, 408, 690, 1059
PmaCI	CACGTG	1 cut(s)	1166
PmlI	CACGTG	1 cut(s)	1166
PpsI	GAGTC	5 cut(s)	205, 385, 408, 690, 1059
Ppu21I	YACGTR	1 cut(s)	1166
PpuMI	RGGWCCY	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	5 cut(s)	260, 874, 887, 1515, 1588
PspCI	CACGTG	1 cut(s)	1166
PspGI	CCWGG	5 cut(s)	260, 874, 887, 1515, 1588
PspPI	GGNCC	3 cut(s)	85, 1116, 1513
PspPPI	RGGWCCY	1 cut(s)	85
PstI	CTGCAG	2 cut(s)	1387, 1491
PstNI	CAGNNNCTG	4 cut(s)	1150, 1382, 1516, 1709
PsuI	RGATCY	3 cut(s)	482, 610, 929
PsyI	GACNNNGTC	1 cut(s)	89
PvuII	CAGCTG	2 cut(s)	497, 1706
RsaI	GTAC	1 cut(s)	963
RsaNI	GTAC	1 cut(s)	962
RseI	CAYNNNNRTG	2 cut(s)	171, 1398
SapI	GCTCTTC	1 cut(s)	1353
SatI	GCNGC	7 cut(s)	590, 1383, 1386, 1422, 1425, 1704, 1707
Sau3AI	GATC	9 cut(s)	482, 532, 610, 760, 929, 1035, 1141, 1405, 1683
Sau96I	GGNCC	3 cut(s)	85, 1116, 1513
SchI	GAGTC	5 cut(s)	206, 386, 409, 690, 1059
ScrFI	CCNGG	6 cut(s)	262, 876, 889, 1308, 1517, 1590
SduI	GDGCHC	1 cut(s)	958
SfaNI	GCATC	5 cut(s)	97, 592, 627, 1302, 1369
SfcI	CTRYAG	2 cut(s)	1383, 1487
Sfr274I	CTCGAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	426
SmiI	ATTTAAAT	1 cut(s)	288
SmiMI	CAYNNNNRTG	2 cut(s)	171, 1398
SmlI	CTYRAG	3 cut(s)	426, 1111, 1266
SmoI	CTYRAG	3 cut(s)	426, 1111, 1266
SsiI	CCGC	2 cut(s)	592, 734
SspMI	CTAG	3 cut(s)	1137, 1442, 1584
StyD4I	CCNGG	6 cut(s)	260, 874, 887, 1306, 1515, 1588
StyI	CCWWGG	4 cut(s)	81, 1069, 1821, 1844
SwaI	ATTTAAAT	1 cut(s)	288
TaaI	ACNGT	4 cut(s)	871, 911, 981, 1439
TaiI	ACGT	1 cut(s)	1168
TaqI	TCGA	3 cut(s)	427, 671, 1063
TaqII	GACCGA	1 cut(s)	889
TfiI	GAWTC	4 cut(s)	74, 555, 896, 968
TscAI	CASTG	4 cut(s)	874, 963, 1023, 1360
TseFI	GTSAC	2 cut(s)	644, 901
TseI	GCWGC	7 cut(s)	589, 1382, 1385, 1421, 1424, 1703, 1706
Tsp45I	GTSAC	2 cut(s)	644, 901
TspGWI	ACGGA	4 cut(s)	805, 851, 1615, 1779
TspRI	CASTG	4 cut(s)	874, 963, 1023, 1360
Tth111I	GACNNNGTC	1 cut(s)	89
VneI	GTGCAC	1 cut(s)	954
VpaK11BI	GGWCC	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	4 cut(s)	5, 433, 1044, 1613
XbaI	TCTAGA	2 cut(s)	1441, 1583
XceI	RCATGY	1 cut(s)	1582
XhoI	CTCGAG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	96
XmnI	GAANNNNTTC	3 cut(s)	633, 1362, 1454
XspI	CTAG	3 cut(s)	1137, 1442, 1584

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.