Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010153

Physical Location & Seq

Genomic Coordinates Forward (+)

26483096 .. 26486390

Gene Structure 3295 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g29490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGAAATGGAAATAGACCCCGATGACCTTTTCAGAGACGACGACGACGACGCAGACAATGAACTCTTCCAGGGAAGGGAGTCGACGAAGGAGCTTGTGGTGTACTTGGTTGATGCTTCCCCCAAAATGTTTAGCACTACTTGCCCATCCGGGGACAATAAGGACGAAACTCATTTTCATGTTGCTGTGAGTTGTATCGCACAGTCTCTGAAGACACAAATCATTAATAATGCATATGATGAAGTTGCCATATGCTTCTTTAACACTAGGGAAAAATGGAACTTGCAAGATTTAAATGGTGTTTATGTGTTTAACGTTGCTGAACAAGAGTATCTAGACAGGCCAACAGCAAGGCTAATTAAAGAAATTGATAGCGTAGAAGAATCATTTATGAGCAAAATCGGGAGTCAGTATGGTATTGTCTCTGGATCCCGAGAAAATTCTCTTTACAATGCCCTCTGGGTGGCCCAAGCACTATTGCGTAAAGGATCTTTGAAGACAGCCGAAAAGCGTGTTCTTTTATTTACAAATGAAGACAATCCATTTGGCAACATTACGGGAGTCATAAAGACAGATATGATGAGGACCACATTGCAGCGGGCTAGAGATGCACAAGATCTTGGCATCTCAATTGAACTTCTTCCATTGAGTCGACCTGACAGTGATTTCAATGTTTCTACTTTCTACTCTGATTTACTTGGACTCAAAAGTGATGAACTTGCTCGATTTATGCCCGCAGCAGGAGAAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N SAP

Protein Analysis

251

Amino Acids

28.22

Weight (kDa)

4.51

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_N	PF03731	33 - 247	8.4e-52	Ku70/Ku80 N-terminal alpha/beta domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16970
fragaria_vesca	FvH4_4g12150 FvH4_4g12150 FvH4_4g12150 FvH4_4g12150
malus_domestica	MD13G1278700.v1.1
prunus_persica	Prupe.1G178000_v2.0.a1 Prupe.1G178000_v2.0.a1
pyrus_communis	pycom13g29490
rosa_chinensis	RchiOBHm_Chr4g0409801
rosa_laevigata	RLG00000008521
rosa_multiflora	Rmu_sc0019800.1_g000001 Rmu_sc0042987.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354350
rosa_rugosa	Rorug04G0096600
rosa_samantha	Rh4AG158200 Rh4BG157900 Rh4CG168700 Rh4DG152800
rosa_wichuraiana	Rw0G017490 Rw4G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	83, 652
AciI	CCGC	2 cut(s)	598, 735
AclI	AACGTT	1 cut(s)	315
AclWI	GGATC	3 cut(s)	423, 436, 496
AcsI	RAATTY	1 cut(s)	439
AcuI	CTGAAG	1 cut(s)	230
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	4 cut(s)	76, 151, 463, 740
AgsI	TTSAA	3 cut(s)	496, 635, 670
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	1 cut(s)	94
AluI	AGCT	1 cut(s)	94
Alw26I	GTCTC	3 cut(s)	30, 210, 427
AlwI	GGATC	3 cut(s)	423, 436, 496
AlwNI	CAGNNNCTG	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	432
AoxI	GGCC	2 cut(s)	341, 465
ApeKI	GCWGC	2 cut(s)	595, 737
ApoI	RAATTY	1 cut(s)	439
ArsI	GACNNNNNNTTYG	2 cut(s)	527, 559
AseI	ATTAAT	1 cut(s)	225
Asp700I	GAANNNNTTC	1 cut(s)	639
AspS9I	GGNCC	2 cut(s)	466, 585
AsuC2I	CCSGG	1 cut(s)	151
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	1 cut(s)	585
BaeI	ACNNNNGTAYC	2 cut(s)	314, 347
BamHI	GGATCC	1 cut(s)	428
BbsI	GAAGAC	3 cut(s)	218, 503, 540
BbvI	GCAGC	2 cut(s)	607, 749
BccI	CCATC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	71
BcnI	CCSGG	1 cut(s)	151
BcoDI	GTCTC	3 cut(s)	30, 210, 427
BfaI	CTAG	3 cut(s)	267, 335, 603
BglII	AGATCT	1 cut(s)	616
BisI	GCNGC	2 cut(s)	596, 738
BlsI	GCNGC	2 cut(s)	597, 739
Bme1390I	CCNGG	2 cut(s)	71, 151
Bme18I	GGWCC	1 cut(s)	585
BmeT110I	CYCGRG	1 cut(s)	432
BmgT120I	GGNCC	2 cut(s)	466, 585
BmiI	GGNNCC	1 cut(s)	430
BmrFI	CCNGG	2 cut(s)	71, 151
BmsI	GCATC	3 cut(s)	103, 598, 633
BpiI	GAAGAC	3 cut(s)	218, 503, 540
BpuMI	CCSGG	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	70, 150
Bsc4I	CCNNNNNNNGG	4 cut(s)	76, 151, 463, 740
Bse3DI	GCAATG	1 cut(s)	590
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	70, 150
BseGI	GGATG	1 cut(s)	146
BseLI	CCNNNNNNNGG	4 cut(s)	76, 151, 463, 740
BseMI	GCAATG	1 cut(s)	590
BseXI	GCAGC	2 cut(s)	607, 749
BshFI	GGCC	2 cut(s)	343, 467
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	4 cut(s)	76, 151, 463, 740
BsmAI	GTCTC	3 cut(s)	30, 210, 427
BsmBI	CGTCTC	1 cut(s)	30
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	343, 467
BsoBI	CYCGRG	1 cut(s)	432
Bsp143I	GATC	3 cut(s)	428, 488, 616
BspACI	CCGC	2 cut(s)	598, 735
BspANI	GGCC	2 cut(s)	343, 467
BspLI	GGNNCC	1 cut(s)	430
BspPI	GGATC	3 cut(s)	423, 436, 496
BsrDI	GCAATG	1 cut(s)	590
BssECI	CCNNGG	2 cut(s)	70, 150
BssMI	GATC	3 cut(s)	428, 488, 616
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	2 cut(s)	204, 662
Bst6I	CTCTTC	1 cut(s)	71
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	600, 735
BstF5I	GGATG	1 cut(s)	146
BstKTI	GATC	3 cut(s)	431, 491, 619
BstMAI	GTCTC	3 cut(s)	30, 210, 427
BstMBI	GATC	3 cut(s)	428, 488, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 608
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	2 cut(s)	69, 149
BstV1I	GCAGC	2 cut(s)	607, 749
BstV2I	GAAGAC	3 cut(s)	218, 503, 540
BstX2I	RGATCY	3 cut(s)	428, 488, 616
BstYI	RGATCY	3 cut(s)	428, 488, 616
BsuRI	GGCC	2 cut(s)	343, 467
BtsCI	GGATG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	2 cut(s)	600, 735
CaiI	CAGNNNCTG	1 cut(s)	208
Cfr13I	GGNCC	2 cut(s)	466, 585
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	179
CviJI	RGCY	6 cut(s)	94, 343, 355, 467, 503, 602
CviKI_1	RGCY	6 cut(s)	94, 343, 355, 467, 503, 602
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	3 cut(s)	430, 490, 618
DpnII	GATC	3 cut(s)	428, 488, 616
DraI	TTTAAA	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco47I	GGWCC	1 cut(s)	585
Eco57I	CTGAAG	1 cut(s)	230
Eco88I	CYCGRG	1 cut(s)	432
EcoRII	CCWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	235
Esp3I	CGTCTC	1 cut(s)	30
FaeI	CATG	1 cut(s)	182
FaqI	GGGAC	1 cut(s)	167
FatI	CATG	1 cut(s)	178
FauI	CCCGC	2 cut(s)	591, 742
FauNDI	CATATG	2 cut(s)	235, 251
FblI	GTMKAC	2 cut(s)	83, 652
Fnu4HI	GCNGC	2 cut(s)	596, 738
FokI	GGATG	1 cut(s)	133
Fsp4HI	GCNGC	2 cut(s)	596, 738
FspBI	CTAG	3 cut(s)	267, 335, 603
GluI	GCNGC	2 cut(s)	596, 738
HaeIII	GGCC	2 cut(s)	343, 467
HapII	CCGG	1 cut(s)	150
HgaI	GACGC	1 cut(s)	59
Hin1II	CATG	1 cut(s)	182
HincII	GTYRAC	2 cut(s)	84, 653
HindII	GTYRAC	2 cut(s)	84, 653
HinfI	GANTC	6 cut(s)	80, 383, 406, 561, 649, 702
HpaII	CCGG	1 cut(s)	150
Hpy166II	GTNNAC	3 cut(s)	84, 103, 653
Hpy188I	TCNGA	3 cut(s)	35, 210, 691
Hpy188III	TCNNGA	4 cut(s)	335, 403, 426, 432
Hpy8I	GTNNAC	3 cut(s)	84, 103, 653
Hpy99I	CGWCG	5 cut(s)	44, 47, 50, 53, 88
HpyAV	CCTTC	2 cut(s)	69, 82
HpyCH4III	ACNGT	2 cut(s)	204, 662
HpyCH4IV	ACGT	1 cut(s)	315
HpyCH4V	TGCA	4 cut(s)	233, 286, 595, 611
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 608
HpySE526I	ACGT	1 cut(s)	315
Hsp92II	CATG	1 cut(s)	182
Kzo9I	GATC	3 cut(s)	428, 488, 616
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	56, 83, 163, 325, 411, 445, 669, 726
Lsp1109I	GCAGC	2 cut(s)	607, 749
LweI	GCATC	3 cut(s)	103, 598, 633
MaeI	CTAG	3 cut(s)	267, 335, 603
MaeII	ACGT	1 cut(s)	315
MalI	GATC	3 cut(s)	430, 490, 618
MboI	GATC	3 cut(s)	428, 488, 616
MboII	GAAGA	6 cut(s)	58, 223, 392, 508, 545, 632
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	3 cut(s)	428, 488, 616
MluCI	AATT	4 cut(s)	357, 366, 439, 630
MlyI	GAGTC	5 cut(s)	89, 415, 570, 658, 696
MnlI	CCTC	2 cut(s)	467, 576
Mph1103I	ATGCAT	1 cut(s)	235
MroXI	GAANNNNTTC	1 cut(s)	639
MseI	TTAA	5 cut(s)	225, 261, 293, 312, 360
MslI	CAYNNNNRTG	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	598
MspI	CCGG	1 cut(s)	150
MspR9I	CCNGG	2 cut(s)	71, 151
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	141, 608
NciI	CCSGG	1 cut(s)	151
NdeI	CATATG	2 cut(s)	235, 251
NdeII	GATC	3 cut(s)	428, 488, 616
NlaIII	CATG	1 cut(s)	182
NlaIV	GGNNCC	1 cut(s)	430
NsiI	ATGCAT	1 cut(s)	235
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	597, 739
PleI	GAGTC	5 cut(s)	88, 414, 569, 657, 696
PpsI	GAGTC	5 cut(s)	88, 414, 569, 657, 696
PshBI	ATTAAT	1 cut(s)	225
Psp1406I	AACGTT	1 cut(s)	315
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspN4I	GGNNCC	1 cut(s)	430
PspPI	GGNCC	2 cut(s)	466, 585
PstNI	CAGNNNCTG	1 cut(s)	208
PsuI	RGATCY	3 cut(s)	428, 488, 616
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
RseI	CAYNNNNRTG	1 cut(s)	177
SalI	GTCGAC	2 cut(s)	82, 651
SaqAI	TTAA	5 cut(s)	225, 261, 293, 312, 360
SatI	GCNGC	2 cut(s)	596, 738
Sau3AI	GATC	3 cut(s)	428, 488, 616
Sau96I	GGNCC	2 cut(s)	466, 585
SchI	GAGTC	5 cut(s)	89, 415, 570, 658, 696
ScrFI	CCNGG	2 cut(s)	71, 151
SetI	ASST	4 cut(s)	30, 96, 318, 658
SfaNI	GCATC	3 cut(s)	103, 598, 633
SinI	GGWCC	1 cut(s)	585
SmiI	ATTTAAAT	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	177
Sse9I	AATT	4 cut(s)	357, 366, 439, 630
SsiI	CCGC	2 cut(s)	598, 735
SspMI	CTAG	3 cut(s)	267, 335, 603
StyD4I	CCNGG	2 cut(s)	69, 149
SwaI	ATTTAAAT	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	204, 662
TaiI	ACGT	1 cut(s)	318
TaqI	TCGA	3 cut(s)	83, 652, 724
TasI	AATT	4 cut(s)	357, 366, 439, 630
TatI	WGTACW	1 cut(s)	102
TfiI	GAWTC	1 cut(s)	383
Tru1I	TTAA	5 cut(s)	225, 261, 293, 312, 360
Tru9I	TTAA	5 cut(s)	225, 261, 293, 312, 360
TscAI	CASTG	1 cut(s)	667
TseI	GCWGC	2 cut(s)	595, 737
TspDTI	ATGAA	5 cut(s)	75, 167, 255, 546, 729
TspRI	CASTG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	585
VspI	ATTAAT	1 cut(s)	225
XapI	RAATTY	1 cut(s)	439
XbaI	TCTAGA	1 cut(s)	334
XmiI	GTMKAC	2 cut(s)	83, 652
XmnI	GAANNNNTTC	1 cut(s)	639
XspI	CTAG	3 cut(s)	267, 335, 603
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.