Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0042987.1

Orthogroup ID

OG0010153

Physical Location & Seq

Genomic Coordinates Forward (+)

683 .. 1219

Gene Structure 537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0042987.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atggaatttgacgccgatgacattttcagagacgacgaagacgacccagacaatgaactctatcaggaaagggaatccaccaaggacctcgtcgtctacctcattgatgcttcccctaaaatgttctccaccactactccagccggagacgggaaggatgaaactcactttcatgttgctatcagttgtatctccgagtctctcaggaaacaaatcattaatgcctcctacgatgaagttgccatatgcttcttcaatacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N SAP

Protein Analysis

87

Amino Acids

9.93

Weight (kDa)

4.09

Isoelectric Point (pI)

38.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16970
fragaria_vesca	FvH4_4g12150 FvH4_4g12150 FvH4_4g12150 FvH4_4g12150
malus_domestica	MD13G1278700.v1.1
prunus_persica	Prupe.1G178000_v2.0.a1 Prupe.1G178000_v2.0.a1
pyrus_communis	pycom13g29490
rosa_chinensis	RchiOBHm_Chr4g0409801
rosa_laevigata	RLG00000008521
rosa_multiflora	Rmu_sc0019800.1_g000001 Rmu_sc0042987.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354350
rosa_rugosa	Rorug04G0096600
rosa_samantha	Rh4AG158200 Rh4BG157900 Rh4CG168700 Rh4DG152800
rosa_wichuraiana	Rw0G017490 Rw4G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccI	GTMKAC	1 cut(s)	96
AcsI	RAATTY	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	12
AfiI	CCNNNNNNNGG	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	256
Alw26I	GTCTC	3 cut(s)	24, 141, 204
ApoI	RAATTY	1 cut(s)	5
AseI	ATTAAT	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	45
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BcoDI	GTCTC	3 cut(s)	24, 141, 204
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	97
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	123
BsaHI	GRCGYC	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	81
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bsc4I	CCNNNNNNNGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	163
BseLI	CCNNNNNNNGG	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	217
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	150
BsmAI	GTCTC	3 cut(s)	24, 141, 204
BsmBI	CGTCTC	2 cut(s)	24, 141
BspCNI	CTCAG	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	81
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	81
BstACI	GRCGYC	1 cut(s)	12
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	1 cut(s)	163
BstMAI	GTCTC	3 cut(s)	24, 141, 204
BstV2I	GAAGAC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	85
CseI	GACGC	1 cut(s)	20
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	1 cut(s)	143
CviKI_1	RGCY	1 cut(s)	143
DdeI	CTNAG	1 cut(s)	203
DrdI	GACNNNNNNGTC	1 cut(s)	92
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	81
Eco47I	GGWCC	1 cut(s)	85
EcoO109I	RGGNCCY	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	2 cut(s)	24, 141
FaeI	CATG	1 cut(s)	176
FaiI	YATR	3 cut(s)	174, 245, 247
FatI	CATG	1 cut(s)	172
FauNDI	CATATG	1 cut(s)	245
FblI	GTMKAC	1 cut(s)	96
FokI	GGATG	1 cut(s)	170
GsuI	CTGGAG	1 cut(s)	123
HapII	CCGG	1 cut(s)	144
HgaI	GACGC	1 cut(s)	20
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	1 cut(s)	176
HinfI	GANTC	2 cut(s)	74, 197
HpaII	CCGG	1 cut(s)	144
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	29, 196
Hpy188III	TCNNGA	2 cut(s)	65, 205
Hpy8I	GTNNAC	1 cut(s)	97
Hpy99I	CGWCG	2 cut(s)	38, 95
HpyAV	CCTTC	1 cut(s)	148
HpyF3I	CTNAG	1 cut(s)	203
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	1 cut(s)	176
LpnPI	CCDG	5 cut(s)	50, 60, 153, 157, 190
LweI	GCATC	1 cut(s)	97
MboII	GAAGA	2 cut(s)	50, 244
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	98, 110, 235
MseI	TTAA	1 cut(s)	219
MslI	CAYNNNNRTG	1 cut(s)	171
MspI	CCGG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	245
NlaIII	CATG	1 cut(s)	176
PcsI	WCGNNNNNNNCGW	1 cut(s)	39
PfeI	GAWTC	1 cut(s)	74
PflFI	GACNNNGTC	1 cut(s)	89
PleI	GAGTC	1 cut(s)	205
PpsI	GAGTC	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	85
PspPPI	RGGWCCY	1 cut(s)	85
PsyI	GACNNNGTC	1 cut(s)	89
RseI	CAYNNNNRTG	1 cut(s)	171
SaqAI	TTAA	1 cut(s)	219
Sau96I	GGNCC	1 cut(s)	85
SchI	GAGTC	1 cut(s)	206
SetI	ASST	2 cut(s)	90, 102
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	171
Sse9I	AATT	1 cut(s)	5
StyI	CCWWGG	1 cut(s)	81
TasI	AATT	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	74
Tru1I	TTAA	1 cut(s)	219
Tru9I	TTAA	1 cut(s)	219
TspDTI	ATGAA	4 cut(s)	69, 161, 174, 249
Tth111I	GACNNNGTC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.