Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0010153

Physical Location & Seq

Genomic Coordinates Reverse (-)

32790689 .. 32802504

Gene Structure 11816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00354350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1599 bp

ATGGAATTTGACGCCGATGACATTTTCAGAGACGACGAAGACGACCCAGACAATGAACTCTATCAGGAAAGGGAATCCACCAAGGACCTCGTCGTCTACCTCGTTGATGCTTCCCCTAAAATGTTCTCCACCACTACTCCAGCCGGAGACGGGAAGGATGAAACTCACTTTCATGTTGCTATCAGTTGTATCTCCGAGTCTCTCAGGAAACAAATCATTAATGCCTCCTACGATGAAGTTGCCATATGCTTCTTCAATACCAGGGAAAAGAGAAACTTGCAAGATTTAATTGGTGTTTATGTGTTTAATGTTGCTGAGCGAGAGTATCTGGACAGGCCAACAGCAAGGCTGATAAAAGAAGTTAGTAATGTAGAAGAGTCATTTATGAGCAAAATTGGGAGTCAGTATGGTATTAACTCTGGGTCTCGAGAAAATTCTCTTTACAATGCCCTTTGGGTAGCCCAAGCACTTCTGCGTAAAGGATCTGCGAGGACAGCCGATAAGCGTGTTCTTTTATTTACAAATGAAGATGATCCATTTGGCAGCATTAAAGGAATCATAAAGACAGACATGATTAGAACCACATTGCAGCGGGCTAAAGATGCACAAGATCTTGGCATCTTAATTGAACTTCTTCCATTGTGTCACCCAGATAATGATTTCAATGATTTAGTTGGACTCACAGTCATAAGAAATGCACATAAGAAATATGAATCAGGGCAACCAGCTGCCGAAAGATCTTTTGTTTGTGCTGATACTGGTGCACTGGTACAGGAATCTGTAAAACGGTTTCAACCCTACAAAACCGAAGATATCAAGTTCTCAGTGGAGGAACTTTCAGAGATCAAAAGAATTTCTACCGGACAACTTCGACTCCTTGGCTTCAAGCCTTTAAATTGCTTGAAAGACTATCACAACTTGAGGCCCGCAACCTTTGTGTTCCCTAGTGATCAGGAACTGATTGGTAGCACACGTGTTTTCATTGCACTACATAAATCCATGCTACGGCTAAAGCGTTTTGCAGTTGCATTTTATGGTAGTTCATCTCGTCCTCAACTGGTTGCTCTTGTTGCTCAACTTCTTATGGGTTCAGATGCTGCAGCGTCTCATGCAAGTGATGATCAAATTAGCAAGGCTGCTGCTTTAATCAACCGTCTAGACTTAAAAGATTTCTCTGTTTTCCAATTTTCTAACCCTGGCCTGCAGAGACACTATGCAGTATTGCAGGCCCTGGCTCTGGACGAGGATGATATACCGGAAATTAAAGATGAAACTTTACCTGATGAGGAAGGCATGTCTAGACCAGGAGTTGTTAGAACAATAGAAGAATTCAAGCATTCCGTTTATGGAGAAAATTATGATGAGGAAAGTGAAGTTGGAAATGCCAAAGCAAGTGAGACCACCAAAAAGCGAAAAGCAGCTGCTGAAAATGCAGTTAAAGAGATTGCTAAGCATGACTGGGCTGACCTTGCAGATAACGGAAAGTTAAAGAATTTGACTGTCATGGACTTGAAGTGCTATTTGACAGCAAATAATCTTCCAGTAGCTGGGAAGAAGGAAGCATTGATCAGTCGAATATTGACTCACATGGGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N SAP

Protein Analysis

532

Amino Acids

59.64

Weight (kDa)

5.37

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ku_N	PF03731	31 - 248	2.3e-42	Ku70/Ku80 N-terminal alpha/beta domain
Ku	PF02735	238 - 359	6.1e-23	Ku70/Ku80 beta-barrel domain
Ku_C	PF03730	391 - 472	2.2e-19	Ku70/Ku80 C-terminal arm
SAP	PF02037	496 - 529	6.4e-06	SAP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16970
fragaria_vesca	FvH4_4g12150 FvH4_4g12150 FvH4_4g12150 FvH4_4g12150
malus_domestica	MD13G1278700.v1.1
prunus_persica	Prupe.1G178000_v2.0.a1 Prupe.1G178000_v2.0.a1
pyrus_communis	pycom13g29490
rosa_chinensis	RchiOBHm_Chr4g0409801
rosa_laevigata	RLG00000008521
rosa_multiflora	Rmu_sc0019800.1_g000001 Rmu_sc0042987.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354350
rosa_rugosa	Rorug04G0096600
rosa_samantha	Rh4AG158200 Rh4BG157900 Rh4CG168700 Rh4DG152800
rosa_wichuraiana	Rw0G017490 Rw4G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	92
AccB7I	CCANNNNNTGG	1 cut(s)	1547
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	2 cut(s)	592, 927
AclWI	GGATC	2 cut(s)	490, 527
AcsI	RAATTY	5 cut(s)	5, 433, 852, 1328, 1492
AcvI	CACGTG	1 cut(s)	974
AcyI	GRCGYC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	4 cut(s)	150, 1005, 1237, 1547
AflIII	ACRYGT	2 cut(s)	971, 973
AgsI	TTSAA	8 cut(s)	256, 629, 664, 794, 886, 904, 1333, 1513
AhdI	GACNNNNNGTC	1 cut(s)	683
AjnI	CCWGG	4 cut(s)	260, 1195, 1230, 1303
AjuI	GAANNNNNNNTTGG	2 cut(s)	1359, 1391
AluBI	AGCT	3 cut(s)	728, 1421, 1547
AluI	AGCT	3 cut(s)	728, 1421, 1547
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	7 cut(s)	24, 141, 204, 429, 1110, 1201, 1391
Alw44I	GTGCAC	1 cut(s)	762
AlwI	GGATC	2 cut(s)	490, 527
AlwNI	CAGNNNCTG	5 cut(s)	958, 1097, 1231, 1424, 1547
Ama87I	CYCGRG	1 cut(s)	426
AoxI	GGCC	4 cut(s)	335, 923, 1198, 1227
ApaLI	GTGCAC	1 cut(s)	762
ApeKI	GCWGC	9 cut(s)	543, 589, 728, 1097, 1100, 1136, 1139, 1418, 1421
ApoI	RAATTY	5 cut(s)	5, 433, 852, 1328, 1492
AseI	ATTAAT	1 cut(s)	219
Asp700I	GAANNNNTTC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	85, 924, 1228
AsuHPI	GGTGA	1 cut(s)	638
AvaI	CYCGRG	1 cut(s)	426
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	1 cut(s)	766
BbrPI	CACGTG	1 cut(s)	974
BbsI	GAAGAC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	9 cut(s)	555, 601, 715, 1084, 1112, 1123, 1126, 1408, 1430
BceAI	ACGGC	1 cut(s)	1022
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BciT130I	CCWGG	4 cut(s)	262, 1197, 1232, 1305
BclI	TGATCA	3 cut(s)	949, 1120, 1566
BcoDI	GTCTC	7 cut(s)	24, 141, 204, 429, 1110, 1201, 1391
BfaI	CTAG	3 cut(s)	945, 1157, 1299
BfmI	CTRYAG	2 cut(s)	1098, 1202
BglII	AGATCT	2 cut(s)	610, 737
BisI	GCNGC	9 cut(s)	544, 590, 729, 1098, 1101, 1137, 1140, 1419, 1422
BlpI	GCTNAGC	2 cut(s)	315, 1449
BlsI	GCNGC	9 cut(s)	545, 591, 730, 1099, 1102, 1138, 1141, 1420, 1423
Bme1390I	CCNGG	4 cut(s)	262, 1197, 1232, 1305
Bme18I	GGWCC	1 cut(s)	85
BmeRI	GACNNNNNGTC	1 cut(s)	683
BmeT110I	CYCGRG	1 cut(s)	426
BmgT120I	GGNCC	3 cut(s)	85, 924, 1228
BmrFI	CCNGG	4 cut(s)	262, 1197, 1232, 1305
BmrI	ACTGGG	1 cut(s)	1468
BmsI	GCATC	4 cut(s)	97, 592, 627, 1084
BmuI	ACTGGG	1 cut(s)	1468
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	123
Bpu1102I	GCTNAGC	2 cut(s)	315, 1449
BpuEI	CTTGAG	1 cut(s)	940
BsaAI	YACGTR	1 cut(s)	974
BsaHI	GRCGYC	1 cut(s)	12
BsaI	GGTCTC	2 cut(s)	429, 1391
BsaJI	CCNNGG	5 cut(s)	81, 261, 877, 1195, 1230
BsaWI	WCCGGW	2 cut(s)	860, 1255
BsaXI	ACNNNNNCTCC	4 cut(s)	121, 151, 858, 888
Bsc4I	CCNNNNNNNGG	4 cut(s)	150, 1005, 1237, 1547
Bse1I	ACTGG	5 cut(s)	763, 771, 1062, 1463, 1541
Bse3DI	GCAATG	2 cut(s)	584, 981
BseBI	CCWGG	4 cut(s)	262, 1197, 1232, 1305
BseDI	CCNNGG	5 cut(s)	81, 261, 877, 1195, 1230
BseGI	GGATG	2 cut(s)	163, 1252
BseLI	CCNNNNNNNGG	4 cut(s)	150, 1005, 1237, 1547
BseMI	GCAATG	2 cut(s)	584, 981
BseMII	CTCAG	3 cut(s)	217, 306, 837
BseNI	ACTGG	5 cut(s)	763, 771, 1062, 1463, 1541
BseSI	GKGCMC	1 cut(s)	766
BseXI	GCAGC	9 cut(s)	555, 601, 715, 1084, 1112, 1123, 1126, 1408, 1430
BseYI	CCCAGC	1 cut(s)	1547
BshFI	GGCC	4 cut(s)	337, 925, 1200, 1229
BsiHKAI	GWGCWC	1 cut(s)	766
BsiHKCI	CYCGRG	1 cut(s)	426
BsiSI	CCGG	3 cut(s)	144, 861, 1256
BslI	CCNNNNNNNGG	4 cut(s)	150, 1005, 1237, 1547
BsmAI	GTCTC	7 cut(s)	24, 141, 204, 429, 1110, 1201, 1391
BsmBI	CGTCTC	3 cut(s)	24, 141, 1110
BsmI	GAATGC	1 cut(s)	1336
BsnI	GGCC	4 cut(s)	337, 925, 1200, 1229
Bso31I	GGTCTC	2 cut(s)	429, 1391
BsoBI	CYCGRG	1 cut(s)	426
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp143I	GATC	8 cut(s)	482, 532, 610, 737, 843, 949, 1120, 1566
Bsp1720I	GCTNAGC	2 cut(s)	315, 1449
BspACI	CCGC	2 cut(s)	592, 927
BspANI	GGCC	4 cut(s)	337, 925, 1200, 1229
BspCNI	CTCAG	3 cut(s)	216, 307, 836
BspMAI	CTGCAG	2 cut(s)	1102, 1206
BspPI	GGATC	2 cut(s)	490, 527
BspTNI	GGTCTC	2 cut(s)	429, 1391
BsrDI	GCAATG	2 cut(s)	584, 981
BsrI	ACTGG	5 cut(s)	763, 771, 1062, 1463, 1541
BssECI	CCNNGG	5 cut(s)	81, 261, 877, 1195, 1230
BssMI	GATC	8 cut(s)	482, 532, 610, 737, 843, 949, 1120, 1566
BssNI	GRCGYC	1 cut(s)	12
BssT1I	CCWWGG	2 cut(s)	81, 877
Bst2UI	CCWGG	4 cut(s)	262, 1197, 1232, 1305
Bst4CI	ACNGT	4 cut(s)	685, 789, 1154, 1501
Bst6I	CTCTTC	1 cut(s)	369
BstACI	GRCGYC	1 cut(s)	12
BstBAI	YACGTR	1 cut(s)	974
BstC8I	GCNNGC	4 cut(s)	594, 927, 1202, 1227
BstDEI	CTNAG	4 cut(s)	203, 315, 823, 1449
BstF5I	GGATG	2 cut(s)	163, 1252
BstKTI	GATC	8 cut(s)	485, 535, 613, 740, 846, 952, 1123, 1569
BstMAI	GTCTC	7 cut(s)	24, 141, 204, 429, 1110, 1201, 1391
BstMBI	GATC	8 cut(s)	482, 532, 610, 737, 843, 949, 1120, 1566
BstMWI	GCNNNNNNNGC	6 cut(s)	494, 602, 1070, 1109, 1430, 1469
BstNI	CCWGG	4 cut(s)	262, 1197, 1232, 1305
BstNSI	RCATGY	1 cut(s)	1297
BstSCI	CCNGG	4 cut(s)	260, 1195, 1230, 1303
BstSFI	CTRYAG	2 cut(s)	1098, 1202
BstSLI	GKGCMC	1 cut(s)	766
BstV1I	GCAGC	9 cut(s)	555, 601, 715, 1084, 1112, 1123, 1126, 1408, 1430
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	3 cut(s)	482, 610, 737
BstYI	RGATCY	3 cut(s)	482, 610, 737
BsuRI	GGCC	4 cut(s)	337, 925, 1200, 1229
BtsCI	GGATG	2 cut(s)	163, 1252
BtsIMutI	CAGTG	2 cut(s)	764, 831
Cac8I	GCNNGC	4 cut(s)	594, 927, 1202, 1227
CaiI	CAGNNNCTG	5 cut(s)	958, 1097, 1231, 1424, 1547
Cfr13I	GGNCC	3 cut(s)	85, 924, 1228
CseI	GACGC	2 cut(s)	20, 1092
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	8 cut(s)	173, 571, 1000, 1109, 1294, 1454, 1504, 1588
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	4 cut(s)	203, 315, 823, 1449
DpnI	GATC	8 cut(s)	484, 534, 612, 739, 845, 951, 1122, 1568
DpnII	GATC	8 cut(s)	482, 532, 610, 737, 843, 949, 1120, 1566
DraI	TTTAAA	1 cut(s)	894
DrdI	GACNNNNNNGTC	1 cut(s)	92
DriI	GACNNNNNGTC	1 cut(s)	683
DseDI	GACNNNNNNGTC	1 cut(s)	92
Eam1104I	CTCTTC	1 cut(s)	369
Eam1105I	GACNNNNNGTC	1 cut(s)	683
EarI	CTCTTC	1 cut(s)	369
Eco130I	CCWWGG	2 cut(s)	81, 877
Eco31I	GGTCTC	2 cut(s)	429, 1391
Eco32I	GATATC	1 cut(s)	814
Eco47I	GGWCC	1 cut(s)	85
Eco72I	CACGTG	1 cut(s)	974
Eco88I	CYCGRG	1 cut(s)	426
EcoO109I	RGGNCCY	2 cut(s)	85, 1228
EcoRI	GAATTC	1 cut(s)	1328
EcoRII	CCWGG	4 cut(s)	260, 1195, 1230, 1303
EcoRV	GATATC	1 cut(s)	814
EcoT14I	CCWWGG	2 cut(s)	81, 877
ErhI	CCWWGG	2 cut(s)	81, 877
Esp3I	CGTCTC	3 cut(s)	24, 141, 1110
FaeI	CATG	8 cut(s)	176, 574, 1003, 1112, 1297, 1457, 1507, 1591
FalI	AAGNNNNNCTT	2 cut(s)	260, 292
FatI	CATG	8 cut(s)	172, 570, 999, 1108, 1293, 1453, 1503, 1587
FauI	CCCGC	2 cut(s)	585, 934
FauNDI	CATATG	1 cut(s)	245
FbaI	TGATCA	3 cut(s)	949, 1120, 1566
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	9 cut(s)	544, 590, 729, 1098, 1101, 1137, 1140, 1419, 1422
FokI	GGATG	2 cut(s)	170, 1259
Fsp4HI	GCNGC	9 cut(s)	544, 590, 729, 1098, 1101, 1137, 1140, 1419, 1422
FspBI	CTAG	3 cut(s)	945, 1157, 1299
GluI	GCNGC	9 cut(s)	544, 590, 729, 1098, 1101, 1137, 1140, 1419, 1422
GsaI	CCCAGC	1 cut(s)	1551
GsuI	CTGGAG	1 cut(s)	123
HaeIII	GGCC	4 cut(s)	337, 925, 1200, 1229
HapII	CCGG	3 cut(s)	144, 861, 1256
HgaI	GACGC	2 cut(s)	20, 1092
Hin1I	GRCGYC	1 cut(s)	12
Hin1II	CATG	8 cut(s)	176, 574, 1003, 1112, 1297, 1457, 1507, 1591
HpaII	CCGG	3 cut(s)	144, 861, 1256
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	2 cut(s)	97, 764
Hpy188I	TCNGA	4 cut(s)	29, 196, 841, 1093
Hpy188III	TCNNGA	9 cut(s)	65, 205, 329, 426, 428, 953, 1157, 1238, 1299
Hpy8I	GTNNAC	2 cut(s)	97, 764
Hpy99I	CGWCG	2 cut(s)	38, 95
HpyAV	CCTTC	3 cut(s)	148, 1283, 1549
HpyCH4III	ACNGT	4 cut(s)	685, 789, 1154, 1501
HpyCH4IV	ACGT	1 cut(s)	973
HpyF10VI	GCNNNNNNNGC	6 cut(s)	494, 602, 1070, 1109, 1430, 1469
HpyF3I	CTNAG	4 cut(s)	203, 315, 823, 1449
HpySE526I	ACGT	1 cut(s)	973
Hsp92I	GRCGYC	1 cut(s)	12
Hsp92II	CATG	8 cut(s)	176, 574, 1003, 1112, 1297, 1457, 1507, 1591
Ksp22I	TGATCA	3 cut(s)	949, 1120, 1566
Kzo9I	GATC	8 cut(s)	482, 532, 610, 737, 843, 949, 1120, 1566
Lsp1109I	GCAGC	9 cut(s)	555, 601, 715, 1084, 1112, 1123, 1126, 1408, 1430
LweI	GCATC	4 cut(s)	97, 592, 627, 1084
MaeI	CTAG	3 cut(s)	945, 1157, 1299
MaeII	ACGT	1 cut(s)	973
MaeIII	GTNAC	1 cut(s)	644
MalI	GATC	8 cut(s)	484, 534, 612, 739, 845, 951, 1122, 1568
MboI	GATC	8 cut(s)	482, 532, 610, 737, 843, 949, 1120, 1566
MboII	GAAGA	9 cut(s)	50, 244, 386, 539, 626, 821, 1337, 1529, 1564
MflI	RGATCY	3 cut(s)	482, 610, 737
MhlI	GDGCHC	1 cut(s)	766
MlyI	GAGTC	6 cut(s)	206, 386, 409, 672, 867, 1576
MmeI	TCCRAC	2 cut(s)	655, 1357
MroXI	GAANNNNTTC	1 cut(s)	633
MslI	CAYNNNNRTG	2 cut(s)	171, 1113
MspA1I	CMGCKG	3 cut(s)	592, 728, 1421
MspI	CCGG	3 cut(s)	144, 861, 1256
MspR9I	CCNGG	4 cut(s)	262, 1197, 1232, 1305
Mva1269I	GAATGC	1 cut(s)	1336
MvaI	CCWGG	4 cut(s)	262, 1197, 1232, 1305
MwoI	GCNNNNNNNGC	6 cut(s)	494, 602, 1070, 1109, 1430, 1469
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	8 cut(s)	482, 532, 610, 737, 843, 949, 1120, 1566
NlaIII	CATG	8 cut(s)	176, 574, 1003, 1112, 1297, 1457, 1507, 1591
NmuCI	GTSAC	1 cut(s)	644
NspI	RCATGY	1 cut(s)	1297
PaeR7I	CTCGAG	1 cut(s)	426
PcsI	WCGNNNNNNNCGW	3 cut(s)	39, 99, 1012
PctI	GAATGC	1 cut(s)	1336
PdmI	GAANNNNTTC	1 cut(s)	633
PfeI	GAWTC	4 cut(s)	74, 555, 713, 776
PflFI	GACNNNGTC	1 cut(s)	89
PflMI	CCANNNNNTGG	1 cut(s)	1547
PkrI	GCNGC	9 cut(s)	545, 591, 730, 1099, 1102, 1138, 1141, 1420, 1423
PleI	GAGTC	6 cut(s)	205, 385, 408, 672, 867, 1576
PmaCI	CACGTG	1 cut(s)	974
PmlI	CACGTG	1 cut(s)	974
PpsI	GAGTC	6 cut(s)	205, 385, 408, 672, 867, 1576
Ppu21I	YACGTR	1 cut(s)	974
PpuMI	RGGWCCY	1 cut(s)	85
PshBI	ATTAAT	1 cut(s)	219
Psp5II	RGGWCCY	1 cut(s)	85
Psp6I	CCWGG	4 cut(s)	260, 1195, 1230, 1303
PspCI	CACGTG	1 cut(s)	974
PspFI	CCCAGC	1 cut(s)	1547
PspGI	CCWGG	4 cut(s)	260, 1195, 1230, 1303
PspPI	GGNCC	3 cut(s)	85, 924, 1228
PspPPI	RGGWCCY	1 cut(s)	85
PstI	CTGCAG	2 cut(s)	1102, 1206
PstNI	CAGNNNCTG	5 cut(s)	958, 1097, 1231, 1424, 1547
PsuI	RGATCY	3 cut(s)	482, 610, 737
PsyI	GACNNNGTC	1 cut(s)	89
PvuII	CAGCTG	2 cut(s)	728, 1421
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
RseI	CAYNNNNRTG	2 cut(s)	171, 1113
SatI	GCNGC	9 cut(s)	544, 590, 729, 1098, 1101, 1137, 1140, 1419, 1422
Sau3AI	GATC	8 cut(s)	482, 532, 610, 737, 843, 949, 1120, 1566
Sau96I	GGNCC	3 cut(s)	85, 924, 1228
SchI	GAGTC	6 cut(s)	206, 386, 409, 672, 867, 1576
ScrFI	CCNGG	4 cut(s)	262, 1197, 1232, 1305
SduI	GDGCHC	1 cut(s)	766
SetI	ASST	9 cut(s)	90, 102, 730, 935, 976, 1282, 1423, 1470, 1549
SfaNI	GCATC	4 cut(s)	97, 592, 627, 1084
SfcI	CTRYAG	2 cut(s)	1098, 1202
Sfr274I	CTCGAG	1 cut(s)	426
SinI	GGWCC	1 cut(s)	85
SlaI	CTCGAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	2 cut(s)	171, 1113
SmlI	CTYRAG	2 cut(s)	426, 919
SmoI	CTYRAG	2 cut(s)	426, 919
SsiI	CCGC	2 cut(s)	592, 927
SspI	AATATT	1 cut(s)	1578
SspMI	CTAG	3 cut(s)	945, 1157, 1299
StyD4I	CCNGG	4 cut(s)	260, 1195, 1230, 1303
StyI	CCWWGG	2 cut(s)	81, 877
TaaI	ACNGT	4 cut(s)	685, 789, 1154, 1501
TaiI	ACGT	1 cut(s)	976
TaqI	TCGA	3 cut(s)	427, 871, 1573
TfiI	GAWTC	4 cut(s)	74, 555, 713, 776
TscAI	CASTG	2 cut(s)	771, 831
TseFI	GTSAC	1 cut(s)	644
TseI	GCWGC	9 cut(s)	543, 589, 728, 1097, 1100, 1136, 1139, 1418, 1421
Tsp45I	GTSAC	1 cut(s)	644
TspDTI	ATGAA	9 cut(s)	69, 161, 174, 249, 540, 726, 970, 1032, 1284
TspGWI	ACGGA	2 cut(s)	1330, 1494
TspRI	CASTG	2 cut(s)	771, 831
Tth111I	GACNNNGTC	1 cut(s)	89
Van91I	CCANNNNNTGG	1 cut(s)	1547
VneI	GTGCAC	1 cut(s)	762
VpaK11BI	GGWCC	1 cut(s)	85
VspI	ATTAAT	1 cut(s)	219
XapI	RAATTY	5 cut(s)	5, 433, 852, 1328, 1492
XbaI	TCTAGA	2 cut(s)	1156, 1298
XceI	RCATGY	1 cut(s)	1297
XhoI	CTCGAG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	96
XmnI	GAANNNNTTC	1 cut(s)	633
XspI	CTAG	3 cut(s)	945, 1157, 1299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.