Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019800.1

Orthogroup ID

OG0010153

Physical Location & Seq

Genomic Coordinates Reverse (-)

801 .. 10276

Gene Structure 9476 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019800.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1674 bp

atgagcaaaattgggagtcagtatggtattaactctgggtctcgagaaaattctctttacaatgccctttgggtagcccaagcacttctgcgtaaaggatctgcgaggacagccgataagcgtgttcttttatttacaaatgaagatgatccatttggcagcattaaaggaatcataaagacagacatgattagaaccacattgcagcgggctaaagatgcacaagatcttggcatctcaattgaacttcttccattgtgtcacccagacaatgatttcaatgtttcgactttctactccgatttagttggactcacaggtgatgaacttgctcaatttatgccaaaagcgggagaaaaattggaagatatgaaggatcagctaagaaagcgaatgttcaagaaacggattgtcagaaaaatcactttctcaattgccaatggactttcaattcaactcagttcatatgctctaatccgtcccactgttccaggagcaatcacctggcttgattcggtcactaaccgtcctttgaaggccgaaagatcttttgtttgtgctgatactggtgcactggttcaggaatctgtaaaacggtttcaaccctacaaaaccgaagatatcaagttctcagtggaggaactttcagagatcaaaagaatttctaccggacaacttcgactccttggcttcaagcctttaaattgcttgaaagactatcacaacttgaggccctcgacctttgtgttccctagtgatcaggaactgattggtagcacacgtgttttcattgcactacataaatccatgctacggctaaagcgttttgcagttgcattttatggtagttcatctcgtcctcaactggttgctcttgttgctcaagatgaaataatgagtgctggtggtcaggttgagcctccagggatgcacatgatatatcttccatattccgatgacattagacacactgaagagcttcttatgggttcagatgctgcagcgtctcatgcaagtgatgatcaaattagcaaagctgctgctttaatcaatcgtctagacttgaaagatttctcagttttccaattttctaaccctgggatgcacatgatatatcttccatattccgatgacattagacacactgaagagcttcttatgggttcagatgctgcagcgtctcatgcaagtgatgatcaaattagcaaagctgctgctttaatcaatcgtctagacttgaaagatttctcagttttccaattttctaaccctgccctgcagagacactatgcagtattgcaggccctggctctggatgaggatgatataccggaaattaaagatgaaactttacctgatgaggaaggcatgtctagaccaggagttgttagaacaatagaagaattcaagcattccgtttatggagaaaattatgatgaggaaagtgaagttggaaatgccaaagtaagtgagaccaccaaaaagcgaaaagcagctgctgaaaatgcagttaaagagatttctaagcatgactgggctgaccttgccgataacggaaagttaaagaatttgactgttatggacttgaagtgctatttgacagcaaataatcttccagtagctgggaagaaggaagcattgatcagtcgaatattgactcacatggggaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000723 GO:0000726 GO:0000781 GO:0000784 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0016043 GO:0031974 GO:0031981 GO:0032200 GO:0033554 GO:0034641 GO:0042162 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051276 GO:0051716 GO:0060249 GO:0065007 GO:0065008 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

Ku Ku_C Ku_N SAP

Protein Analysis

557

Amino Acids

62.15

Weight (kDa)

6.16

Isoelectric Point (pI)

42.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16970
fragaria_vesca	FvH4_4g12150 FvH4_4g12150 FvH4_4g12150 FvH4_4g12150
malus_domestica	MD13G1278700.v1.1
prunus_persica	Prupe.1G178000_v2.0.a1 Prupe.1G178000_v2.0.a1
pyrus_communis	pycom13g29490
rosa_chinensis	RchiOBHm_Chr4g0409801
rosa_laevigata	RLG00000008521
rosa_multiflora	Rmu_sc0019800.1_g000001 Rmu_sc0042987.1_g000001
rosa_roxburghii	Rroxscaffold_5G00354350
rosa_rugosa	Rorug04G0096600
rosa_samantha	Rh4AG158200 Rh4BG157900 Rh4CG168700 Rh4DG152800
rosa_wichuraiana	Rw0G017490 Rw4G013070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1622
AciI	CCGC	2 cut(s)	208, 350
AclWI	GGATC	3 cut(s)	106, 143, 384
AcsI	RAATTY	4 cut(s)	49, 660, 1403, 1567
AcuI	CTGAAG	2 cut(s)	993, 1167
AcvI	CACGTG	1 cut(s)	782
AfiI	CCNNNNNNNGG	4 cut(s)	350, 813, 1312, 1622
AflIII	ACRYGT	2 cut(s)	779, 781
AjnI	CCWGG	6 cut(s)	490, 503, 922, 1096, 1305, 1378
AjuI	GAANNNNNNNTTGG	2 cut(s)	1434, 1466
AluBI	AGCT	7 cut(s)	382, 979, 1037, 1153, 1211, 1496, 1622
AluI	AGCT	7 cut(s)	382, 979, 1037, 1153, 1211, 1496, 1622
Alw21I	GWGCWC	1 cut(s)	574
Alw26I	GTCTC	5 cut(s)	45, 1011, 1185, 1276, 1466
Alw44I	GTGCAC	1 cut(s)	570
AlwI	GGATC	3 cut(s)	106, 143, 384
AlwNI	CAGNNNCTG	6 cut(s)	766, 998, 1172, 1306, 1499, 1622
Ama87I	CYCGRG	1 cut(s)	42
AoxI	GGCC	3 cut(s)	537, 731, 1302
ApaLI	GTGCAC	1 cut(s)	570
ApoI	RAATTY	4 cut(s)	49, 660, 1403, 1567
Asp700I	GAANNNNTTC	5 cut(s)	249, 978, 1070, 1152, 1244
AspS9I	GGNCC	2 cut(s)	732, 1303
AsuHPI	GGTGA	3 cut(s)	254, 332, 493
AvaI	CYCGRG	1 cut(s)	42
BaeGI	GKGCMC	1 cut(s)	574
BbrPI	CACGTG	1 cut(s)	782
Bbv12I	GWGCWC	1 cut(s)	574
BceAI	ACGGC	1 cut(s)	830
BciT130I	CCWGG	6 cut(s)	492, 505, 924, 1098, 1307, 1380
BclI	TGATCA	4 cut(s)	757, 1021, 1195, 1641
BcoDI	GTCTC	5 cut(s)	45, 1011, 1185, 1276, 1466
BfaI	CTAG	4 cut(s)	753, 1058, 1232, 1374
BfmI	CTRYAG	3 cut(s)	999, 1173, 1277
BglII	AGATCT	2 cut(s)	226, 545
Bme1390I	CCNGG	6 cut(s)	492, 505, 924, 1098, 1307, 1380
BmeT110I	CYCGRG	1 cut(s)	42
BmgT120I	GGNCC	2 cut(s)	732, 1303
BmrFI	CCNGG	6 cut(s)	492, 505, 924, 1098, 1307, 1380
BmrI	ACTGGG	1 cut(s)	1543
BmsI	GCATC	6 cut(s)	208, 243, 918, 985, 1092, 1159
BmuI	ACTGGG	1 cut(s)	1543
BpmI	CTGGAG	1 cut(s)	906
BpuEI	CTTGAG	2 cut(s)	748, 867
BsaAI	YACGTR	1 cut(s)	782
BsaI	GGTCTC	2 cut(s)	45, 1466
BsaJI	CCNNGG	5 cut(s)	685, 923, 1096, 1097, 1305
BsaWI	WCCGGW	2 cut(s)	668, 1330
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	350, 813, 1312, 1622
Bse1I	ACTGG	5 cut(s)	571, 579, 870, 1538, 1616
Bse3DI	GCAATG	2 cut(s)	200, 789
BseBI	CCWGG	6 cut(s)	492, 505, 924, 1098, 1307, 1380
BseDI	CCNNGG	5 cut(s)	685, 923, 1096, 1097, 1305
BseGI	GGATG	4 cut(s)	933, 1107, 1321, 1327
BseLI	CCNNNNNNNGG	4 cut(s)	350, 813, 1312, 1622
BseMI	GCAATG	2 cut(s)	200, 789
BseMII	CTCAG	4 cut(s)	472, 645, 1089, 1263
BseNI	ACTGG	5 cut(s)	571, 579, 870, 1538, 1616
BseSI	GKGCMC	1 cut(s)	574
BseYI	CCCAGC	1 cut(s)	1622
BshFI	GGCC	3 cut(s)	539, 733, 1304
BsiHKAI	GWGCWC	1 cut(s)	574
BsiHKCI	CYCGRG	1 cut(s)	42
BsiSI	CCGG	2 cut(s)	669, 1331
BslFI	GGGAC	1 cut(s)	465
BslI	CCNNNNNNNGG	4 cut(s)	350, 813, 1312, 1622
BsmAI	GTCTC	5 cut(s)	45, 1011, 1185, 1276, 1466
BsmBI	CGTCTC	2 cut(s)	1011, 1185
BsmFI	GGGAC	1 cut(s)	465
BsmI	GAATGC	1 cut(s)	1411
BsnI	GGCC	3 cut(s)	539, 733, 1304
Bso31I	GGTCTC	2 cut(s)	45, 1466
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	574
BspACI	CCGC	2 cut(s)	208, 350
BspANI	GGCC	3 cut(s)	539, 733, 1304
BspCNI	CTCAG	4 cut(s)	471, 644, 1088, 1262
BspMAI	CTGCAG	3 cut(s)	1003, 1177, 1281
BspPI	GGATC	3 cut(s)	106, 143, 384
BspQI	GCTCTTC	2 cut(s)	969, 1143
BspTNI	GGTCTC	2 cut(s)	45, 1466
BsrDI	GCAATG	2 cut(s)	200, 789
BsrI	ACTGG	5 cut(s)	571, 579, 870, 1538, 1616
BssECI	CCNNGG	5 cut(s)	685, 923, 1096, 1097, 1305
BssT1I	CCWWGG	1 cut(s)	685
Bst2UI	CCWGG	6 cut(s)	492, 505, 924, 1098, 1307, 1380
Bst4CI	ACNGT	4 cut(s)	487, 527, 597, 1576
Bst6I	CTCTTC	2 cut(s)	969, 1143
BstBAI	YACGTR	1 cut(s)	782
BstC8I	GCNNGC	2 cut(s)	210, 1302
BstDEI	CTNAG	6 cut(s)	383, 458, 631, 1075, 1249, 1524
BstF5I	GGATG	4 cut(s)	933, 1107, 1321, 1327
BstMAI	GTCTC	5 cut(s)	45, 1011, 1185, 1276, 1466
BstMWI	GCNNNNNNNGC	8 cut(s)	110, 218, 388, 878, 1010, 1184, 1505, 1544
BstNI	CCWGG	6 cut(s)	492, 505, 924, 1098, 1307, 1380
BstNSI	RCATGY	1 cut(s)	1372
BstSCI	CCNGG	6 cut(s)	490, 503, 922, 1096, 1305, 1378
BstSFI	CTRYAG	3 cut(s)	999, 1173, 1277
BstSLI	GKGCMC	1 cut(s)	574
BstX2I	RGATCY	3 cut(s)	98, 226, 545
BstYI	RGATCY	3 cut(s)	98, 226, 545
BsuRI	GGCC	3 cut(s)	539, 733, 1304
BtsCI	GGATG	4 cut(s)	933, 1107, 1321, 1327
BtsIMutI	CAGTG	5 cut(s)	483, 572, 639, 969, 1143
Cac8I	GCNNGC	2 cut(s)	210, 1302
CaiI	CAGNNNCTG	6 cut(s)	766, 998, 1172, 1306, 1499, 1622
Cfr13I	GGNCC	2 cut(s)	732, 1303
CseI	GACGC	2 cut(s)	993, 1167
CviAII	CATG	9 cut(s)	187, 808, 934, 1010, 1108, 1184, 1369, 1529, 1663
DdeI	CTNAG	6 cut(s)	383, 458, 631, 1075, 1249, 1524
DraI	TTTAAA	1 cut(s)	702
Eam1104I	CTCTTC	2 cut(s)	969, 1143
EarI	CTCTTC	2 cut(s)	969, 1143
Eco130I	CCWWGG	1 cut(s)	685
Eco31I	GGTCTC	2 cut(s)	45, 1466
Eco32I	GATATC	1 cut(s)	622
Eco57I	CTGAAG	2 cut(s)	993, 1167
Eco72I	CACGTG	1 cut(s)	782
Eco88I	CYCGRG	1 cut(s)	42
EcoO109I	RGGNCCY	2 cut(s)	732, 1303
EcoRI	GAATTC	1 cut(s)	1403
EcoRII	CCWGG	6 cut(s)	490, 503, 922, 1096, 1305, 1378
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	685
ErhI	CCWWGG	1 cut(s)	685
Esp3I	CGTCTC	2 cut(s)	1011, 1185
FaeI	CATG	9 cut(s)	190, 811, 937, 1013, 1111, 1187, 1372, 1532, 1666
FalI	AAGNNNNNCTT	4 cut(s)	966, 998, 1140, 1172
FaqI	GGGAC	1 cut(s)	465
FatI	CATG	9 cut(s)	186, 807, 933, 1009, 1107, 1183, 1368, 1528, 1662
FauI	CCCGC	2 cut(s)	201, 343
FauNDI	CATATG	1 cut(s)	466
FbaI	TGATCA	4 cut(s)	757, 1021, 1195, 1641
FokI	GGATG	4 cut(s)	940, 1114, 1328, 1334
FspBI	CTAG	4 cut(s)	753, 1058, 1232, 1374
GsaI	CCCAGC	1 cut(s)	1626
GsuI	CTGGAG	1 cut(s)	906
HaeIII	GGCC	3 cut(s)	539, 733, 1304
HapII	CCGG	2 cut(s)	669, 1331
HgaI	GACGC	2 cut(s)	993, 1167
Hin1II	CATG	9 cut(s)	190, 811, 937, 1013, 1111, 1187, 1372, 1532, 1666
HinfI	GANTC	7 cut(s)	16, 171, 312, 512, 584, 681, 1657
HpaII	CCGG	2 cut(s)	669, 1331
HphI	GGTGA	3 cut(s)	254, 332, 493
Hpy166II	GTNNAC	1 cut(s)	572
Hpy188I	TCNGA	7 cut(s)	301, 416, 649, 955, 994, 1129, 1168
Hpy8I	GTNNAC	1 cut(s)	572
HpyAV	CCTTC	4 cut(s)	367, 529, 1358, 1624
HpyCH4III	ACNGT	4 cut(s)	487, 527, 597, 1576
HpyCH4IV	ACGT	1 cut(s)	781
HpyF10VI	GCNNNNNNNGC	8 cut(s)	110, 218, 388, 878, 1010, 1184, 1505, 1544
HpyF3I	CTNAG	6 cut(s)	383, 458, 631, 1075, 1249, 1524
HpySE526I	ACGT	1 cut(s)	781
Hsp92II	CATG	9 cut(s)	190, 811, 937, 1013, 1111, 1187, 1372, 1532, 1666
Ksp22I	TGATCA	4 cut(s)	757, 1021, 1195, 1641
LguI	GCTCTTC	2 cut(s)	969, 1143
LmnI	GCTCC	1 cut(s)	494
LweI	GCATC	6 cut(s)	208, 243, 918, 985, 1092, 1159
MaeI	CTAG	4 cut(s)	753, 1058, 1232, 1374
MaeII	ACGT	1 cut(s)	781
MaeIII	GTNAC	2 cut(s)	260, 517
MfeI	CAATTG	2 cut(s)	240, 432
MflI	RGATCY	3 cut(s)	98, 226, 545
MhlI	GDGCHC	1 cut(s)	574
MlyI	GAGTC	4 cut(s)	25, 306, 675, 1651
MmeI	TCCRAC	2 cut(s)	289, 1432
MnlI	CCTC	9 cut(s)	99, 631, 723, 745, 870, 930, 1312, 1354, 1432
MroXI	GAANNNNTTC	5 cut(s)	249, 978, 1070, 1152, 1244
MseI	TTAA	8 cut(s)	30, 165, 701, 1046, 1220, 1338, 1512, 1562
MslI	CAYNNNNRTG	2 cut(s)	1014, 1188
MspA1I	CMGCKG	2 cut(s)	208, 1496
MspI	CCGG	2 cut(s)	669, 1331
MspR9I	CCNGG	6 cut(s)	492, 505, 924, 1098, 1307, 1380
MunI	CAATTG	2 cut(s)	240, 432
Mva1269I	GAATGC	1 cut(s)	1411
MvaI	CCWGG	6 cut(s)	492, 505, 924, 1098, 1307, 1380
MwoI	GCNNNNNNNGC	8 cut(s)	110, 218, 388, 878, 1010, 1184, 1505, 1544
NdeI	CATATG	1 cut(s)	466
NlaIII	CATG	9 cut(s)	190, 811, 937, 1013, 1111, 1187, 1372, 1532, 1666
NmuCI	GTSAC	2 cut(s)	260, 517
NspI	RCATGY	1 cut(s)	1372
PaeR7I	CTCGAG	1 cut(s)	42
PasI	CCCWGGG	1 cut(s)	1097
PciSI	GCTCTTC	2 cut(s)	969, 1143
PcsI	WCGNNNNNNNCGW	1 cut(s)	820
PctI	GAATGC	1 cut(s)	1411
PdmI	GAANNNNTTC	5 cut(s)	249, 978, 1070, 1152, 1244
PfeI	GAWTC	3 cut(s)	171, 512, 584
PflMI	CCANNNNNTGG	1 cut(s)	1622
PfoI	TCCNGGA	1 cut(s)	490
PleI	GAGTC	4 cut(s)	24, 306, 675, 1651
PmaCI	CACGTG	1 cut(s)	782
PmlI	CACGTG	1 cut(s)	782
PpsI	GAGTC	4 cut(s)	24, 306, 675, 1651
Ppu21I	YACGTR	1 cut(s)	782
Psp6I	CCWGG	6 cut(s)	490, 503, 922, 1096, 1305, 1378
PspCI	CACGTG	1 cut(s)	782
PspFI	CCCAGC	1 cut(s)	1622
PspGI	CCWGG	6 cut(s)	490, 503, 922, 1096, 1305, 1378
PspPI	GGNCC	2 cut(s)	732, 1303
PstI	CTGCAG	3 cut(s)	1003, 1177, 1281
PstNI	CAGNNNCTG	6 cut(s)	766, 998, 1172, 1306, 1499, 1622
PsuI	RGATCY	3 cut(s)	98, 226, 545
PvuII	CAGCTG	1 cut(s)	1496
RseI	CAYNNNNRTG	2 cut(s)	1014, 1188
SapI	GCTCTTC	2 cut(s)	969, 1143
SaqAI	TTAA	8 cut(s)	30, 165, 701, 1046, 1220, 1338, 1512, 1562
Sau96I	GGNCC	2 cut(s)	732, 1303
SchI	GAGTC	4 cut(s)	25, 306, 675, 1651
ScrFI	CCNGG	6 cut(s)	492, 505, 924, 1098, 1307, 1380
SduI	GDGCHC	1 cut(s)	574
SfaNI	GCATC	6 cut(s)	208, 243, 918, 985, 1092, 1159
SfcI	CTRYAG	3 cut(s)	999, 1173, 1277
Sfr274I	CTCGAG	1 cut(s)	42
SlaI	CTCGAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	2 cut(s)	1014, 1188
SmlI	CTYRAG	3 cut(s)	42, 727, 882
SmoI	CTYRAG	3 cut(s)	42, 727, 882
SsiI	CCGC	2 cut(s)	208, 350
SspI	AATATT	1 cut(s)	1653
SspMI	CTAG	4 cut(s)	753, 1058, 1232, 1374
StyD4I	CCNGG	6 cut(s)	490, 503, 922, 1096, 1305, 1378
StyI	CCWWGG	1 cut(s)	685
TaaI	ACNGT	4 cut(s)	487, 527, 597, 1576
TaiI	ACGT	1 cut(s)	784
TaqI	TCGA	5 cut(s)	43, 287, 679, 737, 1648
TaqII	GACCGA	1 cut(s)	505
TfiI	GAWTC	3 cut(s)	171, 512, 584
Tru1I	TTAA	8 cut(s)	30, 165, 701, 1046, 1220, 1338, 1512, 1562
Tru9I	TTAA	8 cut(s)	30, 165, 701, 1046, 1220, 1338, 1512, 1562
TscAI	CASTG	5 cut(s)	490, 579, 639, 976, 1150
TseFI	GTSAC	2 cut(s)	260, 517
Tsp45I	GTSAC	2 cut(s)	260, 517
TspDTI	ATGAA	8 cut(s)	156, 339, 386, 453, 778, 840, 903, 1359
TspGWI	ACGGA	4 cut(s)	421, 467, 1405, 1569
TspRI	CASTG	5 cut(s)	490, 579, 639, 976, 1150
Van91I	CCANNNNNTGG	1 cut(s)	1622
VneI	GTGCAC	1 cut(s)	570
XapI	RAATTY	4 cut(s)	49, 660, 1403, 1567
XbaI	TCTAGA	3 cut(s)	1057, 1231, 1373
XceI	RCATGY	1 cut(s)	1372
XhoI	CTCGAG	1 cut(s)	42
XmnI	GAANNNNTTC	5 cut(s)	249, 978, 1070, 1152, 1244
XspI	CTAG	4 cut(s)	753, 1058, 1232, 1374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.