AT1G17200

Belongs to the Casparian strip membrane proteins (CASP) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014450
Physical Location & Seq
Forward (+)
5878390 .. 5880073
1684 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17200.2

Sequence Viewer

Length: 615 bp
ATGGAGAAAAGTAATGATCATGACAAGGCTAGCCACGGCGGCTCCGGTGGTGGTGCCACGGAGAAGTGGGAGGAGACTAGCCTCGGAATCCGAACTGCCGAGACAATGCTCCGGTTAGCTCCGGTGGGCCTTTGTGTTGCAGCACTTGTTGTCATGCTTAAGGACTCTGAGACTAATGAGTTCGGTTCAATTTCTTACTCCAATCTCACAGCCTTTAGGTACTTGGTGCACGCAAATGGAATATGTGCAGGCTACTCTCTTCTATCAGCAGCCATTGCAGCGATGCCTCGTTCTTCTTCGACAATGCCTCGTGTTTGGACCTTCTTTTGTCTCGACCAGCTTCTGACCTACCTGGTTCTTGCTGCTGGAGCTGTATCAGCTGAGGTTCTATACTTGGCTTACAATGGAGACTCAGCCATTACTTGGAGCGATGCATGTAGCTCCTATGGCGGTTTCTGTCATAGAGCCACTGCTTCTGTTATAATCACATTCTTTGTGGTTTGTTTCTACATCGTTCTCTCTCTAATCTCCTCTTATAAGCTCTTTACTCGCTTTGATCCTCCTTCCATTGTTGACTCCGCCAAGAATCTCGAAGTCGCTGTCTTCGGAAGTTAG

Protein Analysis

204

Amino Acids

21.88

Weight (kDa)

5.5

Isoelectric Point (pI)

30.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 4 - 74 1.4e-20 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17200 AT1G17200
fragaria_vesca FvH4_5g24950
malus_domestica MD06G1011400.v1.1
prunus_persica Prupe.5G013700_v2.0.a1
pyrus_communis pycom06g00940
rosa_chinensis RchiOBHm_Chr7g0215251
rosa_laevigata RLG00000002677
rosa_multiflora Rmu_sc0002701.1_g000034 Rmu_sc0007904.1_g000026
rosa_roxburghii Rroxscaffold_3G00244380
rosa_rugosa Rorug07G0151500
rosa_samantha Rh7AG288200 Rh7BG280300 Rh7CG308000 Rh7DG291800
rosa_wichuraiana Rw7G024630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 482, 537
AccB1I GGYRCC 1 cut(s) 53
AccB7I CCANNNNNTGG 1 cut(s) 423
AciI CCGC 3 cut(s) 39, 450, 579
AclWI GGATC 1 cut(s) 551
AfaI GTAC 1 cut(s) 221
AfiI CCNNNNNNNGG 1 cut(s) 423
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 189
AjnI CCWGG 1 cut(s) 351
AluBI AGCT 6 cut(s) 119, 340, 371, 380, 441, 541
AluI AGCT 6 cut(s) 119, 340, 371, 380, 441, 541
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 5 cut(s) 68, 95, 164, 335, 402
Alw44I GTGCAC 1 cut(s) 227
AlwI GGATC 1 cut(s) 551
AlwNI CAGNNNCTG 1 cut(s) 343
AoxI GGCC 1 cut(s) 127
ApaLI GTGCAC 1 cut(s) 227
ApeKI GCWGC 4 cut(s) 140, 269, 278, 362
ArsI GACNNNNNNTTYG 1 cut(s) 585
AspS9I GGNCC 2 cut(s) 127, 318
AsuNHI GCTAGC 1 cut(s) 29
AvaII GGWCC 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 231
BanI GGYRCC 1 cut(s) 53
BauI CACGAG 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 231
BbvCI CCTCAGC 1 cut(s) 381
BbvI GCAGC 4 cut(s) 152, 281, 290, 349
BceAI ACGGC 1 cut(s) 52
BciT130I CCWGG 1 cut(s) 353
BclI TGATCA 1 cut(s) 16
BcoDI GTCTC 5 cut(s) 68, 95, 164, 335, 402
BfaI CTAG 2 cut(s) 30, 78
BfrI CTTAAG 1 cut(s) 158
BglI GCCNNNNNGGC 1 cut(s) 39
BisI GCNGC 5 cut(s) 40, 141, 270, 279, 363
BlsI GCNGC 5 cut(s) 41, 142, 271, 280, 364
Bme1390I CCNGG 1 cut(s) 353
Bme18I GGWCC 1 cut(s) 318
BmgT120I GGNCC 2 cut(s) 127, 318
BmiI GGNNCC 2 cut(s) 43, 55
BmrFI CCNGG 1 cut(s) 353
BmsI GCATC 2 cut(s) 273, 421
BmtI GCTAGC 1 cut(s) 33
BpiI GAAGAC 1 cut(s) 595
BpmI CTGGAG 1 cut(s) 387
Bpu10I CCTNAGC 1 cut(s) 381
BsaJI CCNNGG 3 cut(s) 34, 57, 82
BsaWI WCCGGW 3 cut(s) 44, 111, 121
BsaXI ACNNNNNCTCC 2 cut(s) 26, 56
Bsc4I CCNNNNNNNGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 273
BseBI CCWGG 1 cut(s) 353
BseDI CCNNGG 3 cut(s) 34, 57, 82
BseLI CCNNNNNNNGG 1 cut(s) 423
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 159, 372, 426
BseRI GAGGAG 2 cut(s) 86, 520
BseSI GKGCMC 1 cut(s) 231
BseXI GCAGC 4 cut(s) 152, 281, 290, 349
BsgI GTGCAG 1 cut(s) 267
BshFI GGCC 1 cut(s) 129
BshNI GGYRCC 1 cut(s) 53
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 3 cut(s) 45, 112, 122
BslI CCNNNNNNNGG 1 cut(s) 423
BsmAI GTCTC 5 cut(s) 68, 95, 164, 335, 402
BsnI GGCC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 2 cut(s) 16, 556
BspACI CCGC 3 cut(s) 39, 450, 579
BspANI GGCC 1 cut(s) 129
BspCNI CTCAG 3 cut(s) 160, 373, 425
BspHI TCATGA 1 cut(s) 19
BspLI GGNNCC 2 cut(s) 43, 55
BspOI GCTAGC 1 cut(s) 33
BspPI GGATC 1 cut(s) 551
BspT107I GGYRCC 1 cut(s) 53
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 273
BssECI CCNNGG 3 cut(s) 34, 57, 82
BssMI GATC 2 cut(s) 16, 556
BssSI CACGAG 1 cut(s) 309
Bst2BI CACGAG 1 cut(s) 309
Bst2UI CCWGG 1 cut(s) 353
Bst6I CTCTTC 1 cut(s) 264
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 275
BstC8I GCNNGC 3 cut(s) 31, 231, 250
BstDEI CTNAG 3 cut(s) 168, 381, 412
BstDSI CCRYGG 2 cut(s) 34, 57
BstKTI GATC 2 cut(s) 19, 559
BstMAI GTCTC 5 cut(s) 68, 95, 164, 335, 402
BstMBI GATC 2 cut(s) 16, 556
BstMWI GCNNNNNNNGC 6 cut(s) 39, 275, 278, 368, 377, 447
BstNI CCWGG 1 cut(s) 353
BstNSI RCATGY 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 231
BstV1I GCAGC 4 cut(s) 152, 281, 290, 349
BstV2I GAAGAC 1 cut(s) 595
BsuRI GGCC 1 cut(s) 129
BtgI CCRYGG 2 cut(s) 34, 57
BtgZI GCGATG 2 cut(s) 296, 444
BtsI GCAGTG 1 cut(s) 468
BtsIMutI CAGTG 1 cut(s) 468
Cac8I GCNNGC 3 cut(s) 31, 231, 250
CaiI CAGNNNCTG 1 cut(s) 343
CciI TCATGA 1 cut(s) 19
Cfr13I GGNCC 2 cut(s) 127, 318
CsiI ACCWGGT 1 cut(s) 351
Csp6I GTAC 1 cut(s) 220
CviAII CATG 3 cut(s) 20, 154, 435
CviQI GTAC 1 cut(s) 220
DdeI CTNAG 3 cut(s) 168, 381, 412
DpnI GATC 2 cut(s) 18, 558
DpnII GATC 2 cut(s) 16, 556
Eam1104I CTCTTC 1 cut(s) 264
EarI CTCTTC 1 cut(s) 264
EciI GGCGGA 1 cut(s) 568
Eco47I GGWCC 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 351
EcoT22I ATGCAT 1 cut(s) 436
FaeI CATG 3 cut(s) 23, 157, 438
FaiI YATR 9 cut(s) 21, 155, 244, 391, 436, 447, 462, 482, 537
FatI CATG 3 cut(s) 19, 153, 434
FbaI TGATCA 1 cut(s) 16
Fnu4HI GCNGC 5 cut(s) 40, 141, 270, 279, 363
Fsp4HI GCNGC 5 cut(s) 40, 141, 270, 279, 363
FspBI CTAG 2 cut(s) 30, 78
GluI GCNGC 5 cut(s) 40, 141, 270, 279, 363
GsuI CTGGAG 1 cut(s) 387
HaeIII GGCC 1 cut(s) 129
HapII CCGG 3 cut(s) 45, 112, 122
Hin1II CATG 3 cut(s) 23, 157, 438
HincII GTYRAC 1 cut(s) 574
HindII GTYRAC 1 cut(s) 574
HinfI GANTC 5 cut(s) 87, 164, 410, 575, 586
HpaII CCGG 3 cut(s) 45, 112, 122
Hpy166II GTNNAC 2 cut(s) 229, 574
Hpy188I TCNGA 5 cut(s) 86, 92, 169, 345, 608
Hpy188III TCNNGA 3 cut(s) 20, 332, 590
Hpy8I GTNNAC 2 cut(s) 229, 574
HpyAV CCTTC 2 cut(s) 331, 573
HpyCH4V TGCA 5 cut(s) 140, 229, 248, 278, 434
HpyF10VI GCNNNNNNNGC 6 cut(s) 39, 275, 278, 368, 377, 447
HpyF3I CTNAG 3 cut(s) 168, 381, 412
Hsp92II CATG 3 cut(s) 23, 157, 438
Ksp22I TGATCA 1 cut(s) 16
Kzo9I GATC 2 cut(s) 16, 556
LmnI GCTCC 6 cut(s) 47, 114, 124, 368, 426, 446
LpnPI CCDG 8 cut(s) 58, 125, 135, 234, 338, 350, 351, 365
Lsp1109I GCAGC 4 cut(s) 152, 281, 290, 349
LweI GCATC 2 cut(s) 273, 421
MabI ACCWGGT 1 cut(s) 351
MaeI CTAG 2 cut(s) 30, 78
MalI GATC 2 cut(s) 18, 558
MboI GATC 2 cut(s) 16, 556
MboII GAAGA 4 cut(s) 251, 285, 288, 595
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 189
MlyI GAGTC 3 cut(s) 158, 404, 569
MnlI CCTC 7 cut(s) 64, 92, 297, 318, 376, 541, 570
Mph1103I ATGCAT 1 cut(s) 436
MseI TTAA 1 cut(s) 159
MslI CAYNNNNRTG 1 cut(s) 234
MspA1I CMGCKG 1 cut(s) 380
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 3 cut(s) 45, 112, 122
MspR9I CCNGG 1 cut(s) 353
MvaI CCWGG 1 cut(s) 353
MwoI GCNNNNNNNGC 6 cut(s) 39, 275, 278, 368, 377, 447
NdeII GATC 2 cut(s) 16, 556
NheI GCTAGC 1 cut(s) 29
NlaIII CATG 3 cut(s) 23, 157, 438
NlaIV GGNNCC 2 cut(s) 43, 55
NmeAIII GCCGAG 1 cut(s) 124
NsiI ATGCAT 1 cut(s) 436
NspI RCATGY 1 cut(s) 438
PagI TCATGA 1 cut(s) 19
PfeI GAWTC 2 cut(s) 87, 586
PflMI CCANNNNNTGG 1 cut(s) 423
PkrI GCNGC 5 cut(s) 41, 142, 271, 280, 364
PleI GAGTC 3 cut(s) 158, 404, 569
PpsI GAGTC 3 cut(s) 158, 404, 569
PsiI TTATAA 2 cut(s) 482, 537
Psp6I CCWGG 1 cut(s) 351
PspGI CCWGG 1 cut(s) 351
PspN4I GGNNCC 2 cut(s) 43, 55
PspPI GGNCC 2 cut(s) 127, 318
PstNI CAGNNNCTG 1 cut(s) 343
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 1 cut(s) 221
RsaNI GTAC 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 5 cut(s) 40, 141, 270, 279, 363
Sau3AI GATC 2 cut(s) 16, 556
Sau96I GGNCC 2 cut(s) 127, 318
SchI GAGTC 3 cut(s) 158, 404, 569
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 231
SexAI ACCWGGT 1 cut(s) 351
SfaNI GCATC 2 cut(s) 273, 421
SinI GGWCC 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 234
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 189
SsiI CCGC 3 cut(s) 39, 450, 579
SspMI CTAG 2 cut(s) 30, 78
StyD4I CCNGG 1 cut(s) 351
TaqI TCGA 3 cut(s) 299, 333, 591
TasI AATT 1 cut(s) 189
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 87, 586
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TscAI CASTG 1 cut(s) 475
TseI GCWGC 4 cut(s) 140, 269, 278, 362
TspGWI ACGGA 1 cut(s) 74
TspRI CASTG 1 cut(s) 475
Van91I CCANNNNNTGG 1 cut(s) 423
Vha464I CTTAAG 1 cut(s) 158
VneI GTGCAC 1 cut(s) 227
VpaK11BI GGWCC 1 cut(s) 318
XceI RCATGY 1 cut(s) 438
XspI CTAG 2 cut(s) 30, 78
Zsp2I ATGCAT 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.