Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0014450

Physical Location & Seq

Genomic Coordinates Reverse (-)

1376336 .. 1379040

Gene Structure 2705 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1011400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGGTCCTCAAAGACCAAAGAGGCAAGCAAGCTGGGGATCACGGAGAAGGGAAGCTATCAAACCAGGCAAAGCAACAGAAACAGAAGATGAATGTGGTAGATAAGGAAGCTGCTCCAACCTCTCCAATGGAAGTGGTGGGGATGGGGCCCAGAGACGAAGATGGGAGCAGTAGCAGCAGCTTGCGTACGGCAGAGACGTTGCTCCGGCTGCTGCCAATTGCTCCTTGCGTGGTGGCTCTTGTGGTCATGCTTCACGACTCCCAGACCAATGACTTTGGCTCTCTTTCCTATTCCCATCTCGGAGCTTTCAGGTATTTGGTGAACGCCAATGGCATTTGTGCCGGTTATTCTTTTCTCTCCGCTATCATTGCAGCCAAGGCTCGTGCGGCCACCAAGTCTCAAGCCTGGACTTTCTTCTTCCTTGATCATATGCTCACTTACTTAGTTCTGGCTGCCGGAGCTGCGTCAATGGAGGTGCTTTATTTGGCATACAAGGGCAATTCAGCCGCAACCTGGAGTGCAGCTTGTGAATCTTTTGGCGGATTCTGTCACAAAGCCACAATTTCTGTTGCCATTACATTTGTGGCGGTGACTTGCTATGCACTCATTTCACTCATTTCCTCCTATAAACTCTTCAGCAAGTATGATGCTCCTGACCCTGTCGCCAACCCCATCAAGGGCATTCAGACCGCCACCTTCCACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009628 GO:0009791 GO:0009838 GO:0009908 GO:0010227 GO:0022414 GO:0032501 GO:0032502 GO:0048037 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051536 GO:0051540 GO:0061458 GO:0080167 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

237

Amino Acids

25.23

Weight (kDa)

8.22

Isoelectric Point (pI)

26.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	60 - 199	1.2e-38	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17200 AT1G17200
fragaria_vesca	FvH4_5g24950
malus_domestica	MD06G1011400.v1.1
prunus_persica	Prupe.5G013700_v2.0.a1
pyrus_communis	pycom06g00940
rosa_chinensis	RchiOBHm_Chr7g0215251
rosa_laevigata	RLG00000002677
rosa_multiflora	Rmu_sc0002701.1_g000034 Rmu_sc0007904.1_g000026
rosa_roxburghii	Rroxscaffold_3G00244380
rosa_rugosa	Rorug07G0151500
rosa_samantha	Rh7AG288200 Rh7BG280300 Rh7CG308000 Rh7DG291800
rosa_wichuraiana	Rw7G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	363, 389, 510, 543, 590, 693
AclWI	GGATC	1 cut(s)	48
AcoI	YGGCCR	1 cut(s)	390
AcuI	CTGAAG	1 cut(s)	622
AfaI	GTAC	1 cut(s)	190
AfiI	CCNNNNNNNGG	3 cut(s)	516, 679, 680
AjnI	CCWGG	3 cut(s)	66, 407, 515
AluBI	AGCT	7 cut(s)	35, 58, 113, 183, 308, 464, 527
AluI	AGCT	7 cut(s)	35, 58, 113, 183, 308, 464, 527
Alw26I	GTCTC	3 cut(s)	150, 191, 405
AlwI	GGATC	1 cut(s)	48
AoxI	GGCC	2 cut(s)	149, 390
ApaI	GGGCCC	1 cut(s)	153
ApeKI	GCWGC	9 cut(s)	113, 177, 180, 211, 214, 374, 455, 464, 524
AspS9I	GGNCC	3 cut(s)	7, 149, 150
AsuHPI	GGTGA	2 cut(s)	334, 604
AvaII	GGWCC	1 cut(s)	7
BaeGI	GKGCMC	1 cut(s)	153
BanII	GRGCYC	1 cut(s)	153
BauI	CACGAG	1 cut(s)	384
BbvI	GCAGC	9 cut(s)	100, 189, 192, 198, 201, 386, 442, 451, 536
BccI	CCATC	4 cut(s)	139, 158, 306, 683
BceAI	ACGGC	1 cut(s)	207
BciT130I	CCWGG	3 cut(s)	68, 409, 517
BclI	TGATCA	1 cut(s)	427
BcoDI	GTCTC	3 cut(s)	150, 191, 405
Bme1390I	CCNGG	3 cut(s)	68, 409, 517
Bme18I	GGWCC	1 cut(s)	7
BmgT120I	GGNCC	3 cut(s)	7, 149, 150
BmiI	GGNNCC	2 cut(s)	150, 151
BmrFI	CCNGG	3 cut(s)	68, 409, 517
BmsI	GCATC	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	538
BpuEI	CTTGAG	1 cut(s)	387
BsaJI	CCNNGG	1 cut(s)	378
Bsc4I	CCNNNNNNNGG	3 cut(s)	516, 679, 680
Bse118I	RCCGGY	1 cut(s)	344
Bse3DI	GCAATG	1 cut(s)	369
BseBI	CCWGG	3 cut(s)	68, 409, 517
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	516, 679, 680
BseMI	GCAATG	1 cut(s)	369
BseSI	GKGCMC	1 cut(s)	153
BseXI	GCAGC	9 cut(s)	100, 189, 192, 198, 201, 386, 442, 451, 536
BseYI	CCCAGC	1 cut(s)	35
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	151, 392
BsiSI	CCGG	3 cut(s)	208, 345, 459
BsiWI	CGTACG	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	516, 679, 680
BsmAI	GTCTC	3 cut(s)	150, 191, 405
BsmBI	CGTCTC	2 cut(s)	150, 191
BsmI	GAATGC	1 cut(s)	684
BsnI	GGCC	2 cut(s)	151, 392
Bsp120I	GGGCCC	1 cut(s)	149
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	40, 427
BspACI	CCGC	6 cut(s)	363, 389, 510, 543, 590, 693
BspANI	GGCC	2 cut(s)	151, 392
BspLI	GGNNCC	2 cut(s)	150, 151
BspPI	GGATC	1 cut(s)	48
BsrDI	GCAATG	1 cut(s)	369
BsrFI	RCCGGY	1 cut(s)	344
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	2 cut(s)	40, 427
BssSI	CACGAG	1 cut(s)	384
BssT1I	CCWWGG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	3 cut(s)	68, 409, 517
Bst6I	CTCTTC	1 cut(s)	641
BstC8I	GCNNGC	3 cut(s)	29, 33, 185
BstDEI	CTNAG	1 cut(s)	445
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	43, 430
BstMAI	GTCTC	3 cut(s)	150, 191, 405
BstMBI	GATC	2 cut(s)	40, 427
BstMWI	GCNNNNNNNGC	7 cut(s)	177, 211, 371, 380, 389, 461, 464
BstNI	CCWGG	3 cut(s)	68, 409, 517
BstSCI	CCNGG	3 cut(s)	66, 407, 515
BstSLI	GKGCMC	1 cut(s)	153
BstV1I	GCAGC	9 cut(s)	100, 189, 192, 198, 201, 386, 442, 451, 536
BsuRI	GGCC	2 cut(s)	151, 392
BtsCI	GGATG	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	29, 33, 185
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	3 cut(s)	7, 149, 150
CseI	GACGC	1 cut(s)	456
Csp6I	GTAC	1 cut(s)	189
CspCI	CAANNNNNGTGG	2 cut(s)	117, 152
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	1 cut(s)	189
DdeI	CTNAG	1 cut(s)	445
DpnI	GATC	2 cut(s)	42, 429
DpnII	GATC	2 cut(s)	40, 427
EaeI	YGGCCR	1 cut(s)	390
Eam1104I	CTCTTC	1 cut(s)	641
EarI	CTCTTC	1 cut(s)	641
EciI	GGCGGA	1 cut(s)	558
Eco130I	CCWWGG	1 cut(s)	378
Eco24I	GRGCYC	1 cut(s)	153
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	622
EcoO109I	RGGNCCY	2 cut(s)	7, 149
EcoRII	CCWGG	3 cut(s)	66, 407, 515
EcoT14I	CCWWGG	1 cut(s)	378
EcoT38I	GRGCYC	1 cut(s)	153
ErhI	CCWWGG	1 cut(s)	378
Esp3I	CGTCTC	2 cut(s)	150, 191
FaeI	CATG	1 cut(s)	253
FaiI	YATR	7 cut(s)	251, 432, 434, 493, 603, 630, 648
FatI	CATG	1 cut(s)	249
FauNDI	CATATG	1 cut(s)	432
FbaI	TGATCA	1 cut(s)	427
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	39
GsuI	CTGGAG	1 cut(s)	538
HaeIII	GGCC	2 cut(s)	151, 392
HapII	CCGG	3 cut(s)	208, 345, 459
HgaI	GACGC	1 cut(s)	456
Hin1II	CATG	1 cut(s)	253
HinfI	GANTC	3 cut(s)	260, 533, 546
HpaII	CCGG	3 cut(s)	208, 345, 459
HphI	GGTGA	2 cut(s)	334, 604
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	2 cut(s)	305, 690
Hpy188III	TCNNGA	2 cut(s)	257, 656
Hpy8I	GTNNAC	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	44, 709
HpyCH4IV	ACGT	1 cut(s)	200
HpyCH4V	TGCA	3 cut(s)	374, 524, 605
HpyF10VI	GCNNNNNNNGC	7 cut(s)	177, 211, 371, 380, 389, 461, 464
HpyF3I	CTNAG	1 cut(s)	445
HpySE526I	ACGT	1 cut(s)	200
Hsp92II	CATG	1 cut(s)	253
Ksp22I	TGATCA	1 cut(s)	427
Kzo9I	GATC	2 cut(s)	40, 427
LmnI	GCTCC	7 cut(s)	121, 168, 210, 229, 305, 461, 658
Lsp1109I	GCAGC	9 cut(s)	100, 189, 192, 198, 201, 386, 442, 451, 536
LweI	GCATC	1 cut(s)	640
MaeII	ACGT	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	551, 592
MalI	GATC	2 cut(s)	42, 429
MboI	GATC	2 cut(s)	40, 427
MboII	GAAGA	5 cut(s)	100, 173, 409, 412, 628
MfeI	CAATTG	1 cut(s)	219
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	3 cut(s)	219, 502, 564
MlyI	GAGTC	1 cut(s)	254
MmeI	TCCRAC	1 cut(s)	143
MnlI	CCTC	5 cut(s)	17, 20, 133, 469, 634
MspI	CCGG	3 cut(s)	208, 345, 459
MspR9I	CCNGG	3 cut(s)	68, 409, 517
MunI	CAATTG	1 cut(s)	219
Mva1269I	GAATGC	1 cut(s)	684
MvaI	CCWGG	3 cut(s)	68, 409, 517
MwoI	GCNNNNNNNGC	7 cut(s)	177, 211, 371, 380, 389, 461, 464
NdeI	CATATG	1 cut(s)	432
NdeII	GATC	2 cut(s)	40, 427
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	2 cut(s)	150, 151
NmuCI	GTSAC	2 cut(s)	551, 592
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PctI	GAATGC	1 cut(s)	684
PfeI	GAWTC	2 cut(s)	533, 546
Pfl23II	CGTACG	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	662
PleI	GAGTC	1 cut(s)	254
PpsI	GAGTC	1 cut(s)	254
PpuMI	RGGWCCY	1 cut(s)	7
Psp5II	RGGWCCY	1 cut(s)	7
Psp6I	CCWGG	3 cut(s)	66, 407, 515
PspFI	CCCAGC	1 cut(s)	35
PspGI	CCWGG	3 cut(s)	66, 407, 515
PspLI	CGTACG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	150, 151
PspOMI	GGGCCC	1 cut(s)	149
PspPI	GGNCC	3 cut(s)	7, 149, 150
PspPPI	RGGWCCY	1 cut(s)	7
PsyI	GACNNNGTC	1 cut(s)	662
RsaI	GTAC	1 cut(s)	190
RsaNI	GTAC	1 cut(s)	189
Sau3AI	GATC	2 cut(s)	40, 427
Sau96I	GGNCC	3 cut(s)	7, 149, 150
SchI	GAGTC	1 cut(s)	254
ScrFI	CCNGG	3 cut(s)	68, 409, 517
SduI	GDGCHC	1 cut(s)	153
SfaNI	GCATC	1 cut(s)	640
SinI	GGWCC	1 cut(s)	7
SmlI	CTYRAG	1 cut(s)	402
SmoI	CTYRAG	1 cut(s)	402
Sse9I	AATT	3 cut(s)	219, 502, 564
SsiI	CCGC	6 cut(s)	363, 389, 510, 543, 590, 693
StyD4I	CCNGG	3 cut(s)	66, 407, 515
StyI	CCWWGG	1 cut(s)	378
TaiI	ACGT	1 cut(s)	203
TasI	AATT	3 cut(s)	219, 502, 564
TauI	GCSGC	2 cut(s)	392, 512
TfiI	GAWTC	2 cut(s)	533, 546
TseFI	GTSAC	2 cut(s)	551, 592
TseI	GCWGC	9 cut(s)	113, 177, 180, 211, 214, 374, 455, 464, 524
Tsp45I	GTSAC	2 cut(s)	551, 592
TspDTI	ATGAA	1 cut(s)	107
TspGWI	ACGGA	1 cut(s)	60
Tth111I	GACNNNGTC	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.