pycom06g00940

CASP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0014450
Physical Location & Seq
Reverse (-)
900309 .. 902644
2336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g00940.1

Sequence Viewer

Length: 621 bp
ATGAATATGGTAGATAAGGAAGCAGCTCCAACCTCTCCAATGGAAGTGGTGGGGACGGGGCCCAGAGACGAAGATGGGAGCAGCAGCAGCAGCTTGCGGACGGCAGAGACGTTGCTTCGGCTGCTGCCAATTGCTCCTTGCGTGGTGGCTCTTGTGGTCATGCTTCACGACTCCCAGACCAATGACTTTGGCTCTCTTTCCTATTCCCATCTCGGAGCTTTCAGGTATTTGGTGAATGCCAATGGCATTTGTGCTGGTTATTCTTTTCTCTCCGCTATCATTGCAGCCAAGGCTCCTGCGGCCACCAAGTGTCAAGCCTGGACTTTCTTCTTCCTTGATCATGTGCTCACTTATTTAGTTCTGGCTGCCGGAGCTGCGTCAATGGAGGTGCTTTATTTGGCATACAAGGGCGATTCAGCCGTAAACTGGAGTGCAGCTTGTGAATCTTTTGGCGGATTCTGTCACAAAGCCACAATTTCTGTTGCCATTACATTTGTGGCGGTGACTTGCTATGCACTCATTTCACTCATTTCCTCCTATAAACTCTTCAGCAAGTATGATGCTCCTGACCCTGTCGCCAACCCCATCAAGGGCAGTCAGACAGCCACCTTCCACGCTTGA

Protein Analysis

207

Amino Acids

21.83

Weight (kDa)

5.9

Isoelectric Point (pI)

28.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 30 - 170 5e-39 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17200 AT1G17200
fragaria_vesca FvH4_5g24950
malus_domestica MD06G1011400.v1.1
prunus_persica Prupe.5G013700_v2.0.a1
pyrus_communis pycom06g00940
rosa_chinensis RchiOBHm_Chr7g0215251
rosa_laevigata RLG00000002677
rosa_multiflora Rmu_sc0002701.1_g000034 Rmu_sc0007904.1_g000026
rosa_roxburghii Rroxscaffold_3G00244380
rosa_rugosa Rorug07G0151500
rosa_samantha Rh7AG288200 Rh7BG280300 Rh7CG308000 Rh7DG291800
rosa_wichuraiana Rw7G024630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 97, 273, 299, 453, 500
AcoI YGGCCR 1 cut(s) 300
AcuI CTGAAG 1 cut(s) 532
AdeI CACNNNGTG 1 cut(s) 309
AfiI CCNNNNNNNGG 3 cut(s) 426, 589, 590
AjnI CCWGG 1 cut(s) 317
AluBI AGCT 5 cut(s) 26, 93, 218, 374, 437
AluI AGCT 5 cut(s) 26, 93, 218, 374, 437
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 60, 101
AoxI GGCC 2 cut(s) 59, 300
ApaI GGGCCC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 59, 60
AsuHPI GGTGA 2 cut(s) 244, 514
BaeGI GKGCMC 1 cut(s) 63
BanII GRGCYC 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 3 cut(s) 68, 216, 593
BceAI ACGGC 2 cut(s) 117, 404
BciT130I CCWGG 1 cut(s) 319
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 2 cut(s) 60, 101
Bme1390I CCNGG 1 cut(s) 319
BmgT120I GGNCC 2 cut(s) 59, 60
BmiI GGNNCC 3 cut(s) 60, 61, 294
BmrFI CCNGG 1 cut(s) 319
BmsI GCATC 1 cut(s) 550
BpmI CTGGAG 1 cut(s) 448
BsaJI CCNNGG 1 cut(s) 288
Bsc4I CCNNNNNNNGG 3 cut(s) 426, 589, 590
Bse1I ACTGG 1 cut(s) 431
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 319
BseDI CCNNGG 1 cut(s) 288
BseLI CCNNNNNNNGG 3 cut(s) 426, 589, 590
BseMI GCAATG 1 cut(s) 279
BseNI ACTGG 1 cut(s) 431
BseSI GKGCMC 1 cut(s) 63
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 2 cut(s) 61, 302
BsiHKAI GWGCWC 1 cut(s) 348
BsiSI CCGG 1 cut(s) 369
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 426, 589, 590
BsmAI GTCTC 2 cut(s) 60, 101
BsmBI CGTCTC 2 cut(s) 60, 101
BsmFI GGGAC 1 cut(s) 67
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 2 cut(s) 61, 302
Bsp120I GGGCCC 1 cut(s) 59
Bsp1286I GDGCHC 2 cut(s) 63, 348
Bsp143I GATC 1 cut(s) 337
BspACI CCGC 5 cut(s) 97, 273, 299, 453, 500
BspANI GGCC 2 cut(s) 61, 302
BspLI GGNNCC 3 cut(s) 60, 61, 294
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 431
BssECI CCNNGG 1 cut(s) 288
BssMI GATC 1 cut(s) 337
BssT1I CCWWGG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 319
Bst6I CTCTTC 1 cut(s) 551
BstC8I GCNNGC 1 cut(s) 95
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 2 cut(s) 60, 101
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 8 cut(s) 87, 90, 121, 281, 290, 299, 371, 374
BstNI CCWGG 1 cut(s) 319
BstSCI CCNGG 1 cut(s) 317
BstSLI GKGCMC 1 cut(s) 63
BsuRI GGCC 2 cut(s) 61, 302
Cac8I GCNNGC 1 cut(s) 95
Cfr13I GGNCC 2 cut(s) 59, 60
CseI GACGC 1 cut(s) 366
CspCI CAANNNNNGTGG 2 cut(s) 27, 62
CviAII CATG 2 cut(s) 160, 341
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
DraIII CACNNNGTG 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 551
EarI CTCTTC 1 cut(s) 551
EciI GGCGGA 1 cut(s) 468
Eco130I CCWWGG 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 63
Eco57I CTGAAG 1 cut(s) 532
EcoO109I RGGNCCY 1 cut(s) 59
EcoRII CCWGG 1 cut(s) 317
EcoT14I CCWWGG 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 63
ErhI CCWWGG 1 cut(s) 288
Esp3I CGTCTC 2 cut(s) 60, 101
FaeI CATG 2 cut(s) 163, 344
FaiI YATR 7 cut(s) 8, 161, 342, 403, 513, 540, 558
FaqI GGGAC 1 cut(s) 67
FatI CATG 2 cut(s) 159, 340
FbaI TGATCA 1 cut(s) 337
FriOI GRGCYC 1 cut(s) 63
GsuI CTGGAG 1 cut(s) 448
HaeIII GGCC 2 cut(s) 61, 302
HapII CCGG 1 cut(s) 369
HgaI GACGC 1 cut(s) 366
Hin1II CATG 2 cut(s) 163, 344
HinfI GANTC 4 cut(s) 170, 413, 443, 456
HpaII CCGG 1 cut(s) 369
HphI GGTGA 2 cut(s) 244, 514
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 2 cut(s) 215, 600
Hpy188III TCNNGA 2 cut(s) 167, 566
Hpy8I GTNNAC 1 cut(s) 424
HpyAV CCTTC 1 cut(s) 619
HpyCH4IV ACGT 1 cut(s) 110
HpyCH4V TGCA 3 cut(s) 284, 434, 515
HpyF10VI GCNNNNNNNGC 8 cut(s) 87, 90, 121, 281, 290, 299, 371, 374
HpySE526I ACGT 1 cut(s) 110
Hsp92II CATG 2 cut(s) 163, 344
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 7 cut(s) 31, 78, 139, 215, 298, 371, 568
LweI GCATC 1 cut(s) 550
MaeII ACGT 1 cut(s) 110
MaeIII GTNAC 2 cut(s) 461, 502
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 4 cut(s) 83, 319, 322, 538
MfeI CAATTG 1 cut(s) 129
MhlI GDGCHC 2 cut(s) 63, 348
MluCI AATT 2 cut(s) 129, 474
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 3 cut(s) 43, 379, 544
MspI CCGG 1 cut(s) 369
MspR9I CCNGG 1 cut(s) 319
MunI CAATTG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 241
MvaI CCWGG 1 cut(s) 319
MwoI GCNNNNNNNGC 8 cut(s) 87, 90, 121, 281, 290, 299, 371, 374
NdeII GATC 1 cut(s) 337
NlaIII CATG 2 cut(s) 163, 344
NlaIV GGNNCC 3 cut(s) 60, 61, 294
NmuCI GTSAC 2 cut(s) 461, 502
PcsI WCGNNNNNNNCGW 1 cut(s) 107
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 3 cut(s) 413, 443, 456
PflFI GACNNNGTC 1 cut(s) 572
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 317
PspGI CCWGG 1 cut(s) 317
PspN4I GGNNCC 3 cut(s) 60, 61, 294
PspOMI GGGCCC 1 cut(s) 59
PspPI GGNCC 2 cut(s) 59, 60
PsyI GACNNNGTC 1 cut(s) 572
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 2 cut(s) 59, 60
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 319
SduI GDGCHC 2 cut(s) 63, 348
SfaNI GCATC 1 cut(s) 550
Sse9I AATT 2 cut(s) 129, 474
SsiI CCGC 5 cut(s) 97, 273, 299, 453, 500
StyD4I CCNGG 1 cut(s) 317
StyI CCWWGG 1 cut(s) 288
TaiI ACGT 1 cut(s) 113
TasI AATT 2 cut(s) 129, 474
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 3 cut(s) 413, 443, 456
TseFI GTSAC 2 cut(s) 461, 502
Tsp45I GTSAC 2 cut(s) 461, 502
TspDTI ATGAA 1 cut(s) 17
Tth111I GACNNNGTC 1 cut(s) 572
XcmI CCANNNNNNNNNTGG 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.