Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0014450

Physical Location & Seq

Genomic Coordinates Forward (+)

16451960 .. 16454598

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g24950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTCAACTGTCGTAGAGAAGTCTGCAGCGGAAGTTGCACGGGGAGACGAGTTAGAAGGGATGAGTAGCAACGGCAACGGCAGCAGCTTGAGAACGGCGGAGACGCTGCTGCGACTGCTGCCGATTGCTCCCTGTGTGGCTGCTCTGCTGGTCATGCTTCACGATTCCCAGGACAATGAGTTCGGCACCGTTTCCTACTCTCATATTGGAGCCTTCAGGTTTTTGGTGCATGCCAATGGCATATGTGCTGGTTATTCCCTACTGTCTGCTATCATATCAGCCAAGTCCCGTCCCCCCACCAAGTCTCTAGCCTGGACTTTCTTCTTCCTAGATCAATTGCTTACATACATAATTCTGGGAGCTGGAGCTGTGTCGACAGAGATTCTGTACTTGGCTTTCAAGGGAGATTCAACTATAACGTGGAGTCCGGCTTGTGAGAGTTTTGGCGGATTCTGTCACAGAGCCACAACTTCTGTGATCATTACATTTCTGGTGGTGGCTTTCTTTGCTCTCATTTCACTTATTTCATCTTATAAGCTCTTCAGCAAGTTTGATGCTCCTGCCATCAACCCCATTAAGGCCACCTTCGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0005488 GO:0007275 GO:0008150 GO:0009628 GO:0009791 GO:0009838 GO:0009908 GO:0010227 GO:0022414 GO:0032501 GO:0032502 GO:0048037 GO:0048367 GO:0048437 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0051536 GO:0051540 GO:0061458 GO:0080167 GO:0090567 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

198

Amino Acids

21.08

Weight (kDa)

6.4

Isoelectric Point (pI)

37.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	28 - 167	4.3e-40	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0014450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17200 AT1G17200
fragaria_vesca	FvH4_5g24950
malus_domestica	MD06G1011400.v1.1
prunus_persica	Prupe.5G013700_v2.0.a1
pyrus_communis	pycom06g00940
rosa_chinensis	RchiOBHm_Chr7g0215251
rosa_laevigata	RLG00000002677
rosa_multiflora	Rmu_sc0002701.1_g000034 Rmu_sc0007904.1_g000026
rosa_roxburghii	Rroxscaffold_3G00244380
rosa_rugosa	Rorug07G0151500
rosa_samantha	Rh7AG288200 Rh7BG280300 Rh7CG308000 Rh7DG291800
rosa_wichuraiana	Rw7G024630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	534
AccB1I	GGYRCC	1 cut(s)	185
AccI	GTMKAC	1 cut(s)	374
AciI	CCGC	3 cut(s)	29, 98, 447
AcuI	CTGAAG	2 cut(s)	199, 526
AfaI	GTAC	1 cut(s)	389
AfiI	CCNNNNNNNGG	1 cut(s)	577
AgsI	TTSAA	2 cut(s)	400, 411
AjnI	CCWGG	2 cut(s)	168, 311
AloI	GAACNNNNNNTCC	2 cut(s)	164, 196
AluBI	AGCT	4 cut(s)	87, 362, 368, 538
AluI	AGCT	4 cut(s)	87, 362, 368, 538
Alw26I	GTCTC	3 cut(s)	39, 95, 309
AoxI	GGCC	1 cut(s)	579
ApeKI	GCWGC	7 cut(s)	26, 81, 84, 106, 109, 118, 140
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
BanI	GGYRCC	1 cut(s)	185
BbvI	GCAGC	7 cut(s)	38, 93, 93, 96, 96, 105, 127
BccI	CCATC	1 cut(s)	572
BceAI	ACGGC	3 cut(s)	88, 94, 111
BciT130I	CCWGG	2 cut(s)	170, 313
BclI	TGATCA	1 cut(s)	477
BcoDI	GTCTC	3 cut(s)	39, 95, 309
BfaI	CTAG	2 cut(s)	308, 329
BfmI	CTRYAG	1 cut(s)	24
BisI	GCNGC	7 cut(s)	27, 82, 85, 107, 110, 119, 141
BlsI	GCNGC	7 cut(s)	28, 83, 86, 108, 111, 120, 142
Bme1390I	CCNGG	2 cut(s)	170, 313
BmiI	GGNNCC	2 cut(s)	187, 211
BmrFI	CCNGG	2 cut(s)	170, 313
BmsI	GCATC	1 cut(s)	544
BpmI	CTGGAG	1 cut(s)	384
BpuEI	CTTGAG	1 cut(s)	109
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	1 cut(s)	577
BseBI	CCWGG	2 cut(s)	170, 313
BseDI	CCNNGG	1 cut(s)	168
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	577
BseXI	GCAGC	7 cut(s)	38, 93, 93, 96, 96, 105, 127
BshFI	GGCC	1 cut(s)	581
BshNI	GGYRCC	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	428
BslFI	GGGAC	2 cut(s)	271, 276
BslI	CCNNNNNNNGG	1 cut(s)	577
BsmAI	GTCTC	3 cut(s)	39, 95, 309
BsmBI	CGTCTC	2 cut(s)	39, 95
BsmFI	GGGAC	2 cut(s)	271, 276
BsnI	GGCC	1 cut(s)	581
Bsp143I	GATC	2 cut(s)	331, 477
BspACI	CCGC	3 cut(s)	29, 98, 447
BspANI	GGCC	1 cut(s)	581
BspLI	GGNNCC	2 cut(s)	187, 211
BspMAI	CTGCAG	1 cut(s)	28
BspQI	GCTCTTC	1 cut(s)	545
BspT107I	GGYRCC	1 cut(s)	185
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	331, 477
Bst2UI	CCWGG	2 cut(s)	170, 313
Bst4CI	ACNGT	3 cut(s)	10, 190, 264
Bst6I	CTCTTC	1 cut(s)	545
BstC8I	GCNNGC	1 cut(s)	231
BstF5I	GGATG	1 cut(s)	66
BstKTI	GATC	2 cut(s)	334, 480
BstMAI	GTCTC	3 cut(s)	39, 95, 309
BstMBI	GATC	2 cut(s)	331, 477
BstMWI	GCNNNNNNNGC	6 cut(s)	35, 81, 115, 118, 154, 506
BstNI	CCWGG	2 cut(s)	170, 313
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	168, 311
BstSFI	CTRYAG	1 cut(s)	24
BstV1I	GCAGC	7 cut(s)	38, 93, 93, 96, 96, 105, 127
BsuRI	GGCC	1 cut(s)	581
BtsCI	GGATG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	231
CseI	GACGC	1 cut(s)	112
Csp6I	GTAC	1 cut(s)	388
CviAII	CATG	2 cut(s)	154, 230
CviQI	GTAC	1 cut(s)	388
DpnI	GATC	2 cut(s)	333, 479
DpnII	GATC	2 cut(s)	331, 477
Eam1104I	CTCTTC	1 cut(s)	545
EarI	CTCTTC	1 cut(s)	545
EciI	GGCGGA	2 cut(s)	113, 462
Eco57I	CTGAAG	2 cut(s)	199, 526
EcoRII	CCWGG	2 cut(s)	168, 311
Esp3I	CGTCTC	2 cut(s)	39, 95
FaeI	CATG	2 cut(s)	157, 233
FalI	AAGNNNNNCTT	1 cut(s)	569
FaqI	GGGAC	2 cut(s)	271, 276
FatI	CATG	2 cut(s)	153, 229
FauNDI	CATATG	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	374
Fnu4HI	GCNGC	7 cut(s)	27, 82, 85, 107, 110, 119, 141
FokI	GGATG	1 cut(s)	73
Fsp4HI	GCNGC	7 cut(s)	27, 82, 85, 107, 110, 119, 141
FspBI	CTAG	2 cut(s)	308, 329
GluI	GCNGC	7 cut(s)	27, 82, 85, 107, 110, 119, 141
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	581
HapII	CCGG	1 cut(s)	428
HgaI	GACGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	157, 233
HincII	GTYRAC	2 cut(s)	6, 375
HindII	GTYRAC	2 cut(s)	6, 375
HinfI	GANTC	5 cut(s)	164, 382, 407, 424, 450
HpaII	CCGG	1 cut(s)	428
Hpy166II	GTNNAC	2 cut(s)	6, 375
Hpy188III	TCNNGA	1 cut(s)	161
Hpy8I	GTNNAC	2 cut(s)	6, 375
HpyAV	CCTTC	2 cut(s)	50, 223
HpyCH4III	ACNGT	3 cut(s)	10, 190, 264
HpyCH4IV	ACGT	1 cut(s)	419
HpyCH4V	TGCA	3 cut(s)	26, 38, 229
HpyF10VI	GCNNNNNNNGC	6 cut(s)	35, 81, 115, 118, 154, 506
HpySE526I	ACGT	1 cut(s)	419
Hsp92II	CATG	2 cut(s)	157, 233
Ksp22I	TGATCA	1 cut(s)	477
Kzo9I	GATC	2 cut(s)	331, 477
LguI	GCTCTTC	1 cut(s)	545
LmnI	GCTCC	5 cut(s)	133, 209, 359, 365, 562
Lsp1109I	GCAGC	7 cut(s)	38, 93, 93, 96, 96, 105, 127
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	2 cut(s)	308, 329
MaeII	ACGT	1 cut(s)	419
MaeIII	GTNAC	1 cut(s)	455
MalI	GATC	2 cut(s)	333, 479
MboI	GATC	2 cut(s)	331, 477
MboII	GAAGA	3 cut(s)	313, 316, 532
MfeI	CAATTG	1 cut(s)	335
MluCI	AATT	2 cut(s)	335, 351
MlyI	GAGTC	1 cut(s)	433
MseI	TTAA	1 cut(s)	576
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	1 cut(s)	428
MspR9I	CCNGG	2 cut(s)	170, 313
MunI	CAATTG	1 cut(s)	335
MvaI	CCWGG	2 cut(s)	170, 313
MwoI	GCNNNNNNNGC	6 cut(s)	35, 81, 115, 118, 154, 506
NdeI	CATATG	1 cut(s)	242
NdeII	GATC	2 cut(s)	331, 477
NlaIII	CATG	2 cut(s)	157, 233
NlaIV	GGNNCC	2 cut(s)	187, 211
NmuCI	GTSAC	1 cut(s)	455
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PciSI	GCTCTTC	1 cut(s)	545
PfeI	GAWTC	4 cut(s)	164, 382, 407, 450
PkrI	GCNGC	7 cut(s)	28, 83, 86, 108, 111, 120, 142
PleI	GAGTC	1 cut(s)	432
PpsI	GAGTC	1 cut(s)	432
PsiI	TTATAA	1 cut(s)	534
Psp6I	CCWGG	2 cut(s)	168, 311
PspGI	CCWGG	2 cut(s)	168, 311
PspN4I	GGNNCC	2 cut(s)	187, 211
PstI	CTGCAG	1 cut(s)	28
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
RseI	CAYNNNNRTG	1 cut(s)	234
SalI	GTCGAC	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	545
SaqAI	TTAA	1 cut(s)	576
SatI	GCNGC	7 cut(s)	27, 82, 85, 107, 110, 119, 141
Sau3AI	GATC	2 cut(s)	331, 477
SchI	GAGTC	1 cut(s)	433
ScrFI	CCNGG	2 cut(s)	170, 313
SetI	ASST	7 cut(s)	89, 221, 364, 370, 422, 540, 587
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	24
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
SphI	GCATGC	1 cut(s)	233
Sse9I	AATT	2 cut(s)	335, 351
SsiI	CCGC	3 cut(s)	29, 98, 447
SspMI	CTAG	2 cut(s)	308, 329
StyD4I	CCNGG	2 cut(s)	168, 311
TaaI	ACNGT	3 cut(s)	10, 190, 264
TaiI	ACGT	1 cut(s)	422
TaqI	TCGA	1 cut(s)	374
TasI	AATT	2 cut(s)	335, 351
TatI	WGTACW	1 cut(s)	387
TfiI	GAWTC	4 cut(s)	164, 382, 407, 450
Tru1I	TTAA	1 cut(s)	576
Tru9I	TTAA	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	455
TseI	GCWGC	7 cut(s)	26, 81, 84, 106, 109, 118, 140
Tsp45I	GTSAC	1 cut(s)	455
TspDTI	ATGAA	1 cut(s)	516
XceI	RCATGY	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	374
XspI	CTAG	2 cut(s)	308, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.