Rorug07G0151500

CASP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0014450
Physical Location & Seq
Reverse (-)
12029868 .. 12030116
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0151500.1

Sequence Viewer

Length: 249 bp
ATGATGACCAAATTAGCGACACTACTATTGCTCAAAGACGGGGAAGTGCCGCTGGACTTGGGAAACCTCCGAGTTCTGAGGAAGAAGTTTTTGGTGAGAAACTTTTACTTGGTGGGGACCCTGAACACTAATAAATTTGTGGTGGTGGACTCATTCTGGAGCGCTGTCAGATCAATGTGGAGATTGACAGGGACCATTGACGTCCAACCCATGGCCAATCGGTTTCTTTTCACCTTCACCCATGAATAG

Protein Analysis

82

Amino Acids

9.54

Weight (kDa)

10.27

Isoelectric Point (pI)

22.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17200 AT1G17200
fragaria_vesca FvH4_5g24950
malus_domestica MD06G1011400.v1.1
prunus_persica Prupe.5G013700_v2.0.a1
pyrus_communis pycom06g00940
rosa_chinensis RchiOBHm_Chr7g0215251
rosa_laevigata RLG00000002677
rosa_multiflora Rmu_sc0002701.1_g000034 Rmu_sc0007904.1_g000026
rosa_roxburghii Rroxscaffold_3G00244380
rosa_rugosa Rorug07G0151500
rosa_samantha Rh7AG288200 Rh7BG280300 Rh7CG308000 Rh7DG291800
rosa_wichuraiana Rw7G024630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 204
AccB7I CCANNNNNTGG 1 cut(s) 211
AciI CCGC 1 cut(s) 50
AcoI YGGCCR 1 cut(s) 213
AcsI RAATTY 1 cut(s) 134
AcyI GRCGYC 1 cut(s) 201
AfeI AGCGCT 1 cut(s) 163
AfiI CCNNNNNNNGG 1 cut(s) 211
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
Aor51HI AGCGCT 1 cut(s) 163
AoxI GGCC 1 cut(s) 213
ApoI RAATTY 1 cut(s) 134
AspLEI GCGC 1 cut(s) 164
AspS9I GGNCC 2 cut(s) 117, 192
AsuHPI GGTGA 3 cut(s) 106, 223, 229
AvaII GGWCC 2 cut(s) 117, 192
BalI TGGCCA 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 165
BisI GCNGC 1 cut(s) 50
BlsI GCNGC 1 cut(s) 51
Bme18I GGWCC 2 cut(s) 117, 192
BmgT120I GGNCC 2 cut(s) 117, 192
BmiI GGNNCC 3 cut(s) 118, 119, 193
BpmI CTGGAG 1 cut(s) 178
BsaHI GRCGYC 1 cut(s) 201
BsaJI CCNNGG 1 cut(s) 210
Bsc4I CCNNNNNNNGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 210
BseLI CCNNNNNNNGG 1 cut(s) 211
BseMII CTCAG 1 cut(s) 68
BshFI GGCC 1 cut(s) 215
BslFI GGGAC 2 cut(s) 130, 205
BslI CCNNNNNNNGG 1 cut(s) 211
BsmFI GGGAC 2 cut(s) 130, 205
BsnI GGCC 1 cut(s) 215
Bsp143I GATC 1 cut(s) 170
Bsp19I CCATGG 1 cut(s) 210
BspACI CCGC 1 cut(s) 50
BspANI GGCC 1 cut(s) 215
BspCNI CTCAG 1 cut(s) 69
BspLI GGNNCC 3 cut(s) 118, 119, 193
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 170
BssNI GRCGYC 1 cut(s) 201
BssT1I CCWWGG 1 cut(s) 210
BstACI GRCGYC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 77
BstDSI CCRYGG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 165
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 173
BstMBI GATC 1 cut(s) 170
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 210
CfoI GCGC 1 cut(s) 164
Cfr13I GGNCC 2 cut(s) 117, 192
CviAII CATG 2 cut(s) 211, 242
CviJI RGCY 1 cut(s) 215
CviKI_1 RGCY 1 cut(s) 215
DdeI CTNAG 1 cut(s) 77
DpnI GATC 1 cut(s) 172
DpnII GATC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 210
Eco47I GGWCC 2 cut(s) 117, 192
Eco47III AGCGCT 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 2 cut(s) 214, 245
FaiI YATR 2 cut(s) 212, 243
FaqI GGGAC 2 cut(s) 130, 205
FatI CATG 2 cut(s) 210, 241
Fnu4HI GCNGC 1 cut(s) 50
Fsp4HI GCNGC 1 cut(s) 50
GlaI GCGC 1 cut(s) 163
GluI GCNGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 178
HaeII RGCGCY 1 cut(s) 165
HaeIII GGCC 1 cut(s) 215
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 201
Hin1II CATG 2 cut(s) 214, 245
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HinfI GANTC 1 cut(s) 149
HphI GGTGA 3 cut(s) 106, 223, 229
Hpy166II GTNNAC 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 71, 78, 170
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 148
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 1 cut(s) 201
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 201
Hsp92II CATG 2 cut(s) 214, 245
HspAI GCGC 1 cut(s) 162
KflI GGGWCCC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 170
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 4 cut(s) 38, 134, 142, 174
MaeII ACGT 1 cut(s) 201
MalI GATC 1 cut(s) 172
MboI GATC 1 cut(s) 170
MboII GAAGA 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 215
MluCI AATT 2 cut(s) 11, 134
MluNI TGGCCA 1 cut(s) 215
MlyI GAGTC 1 cut(s) 143
MmeI TCCRAC 1 cut(s) 229
MnlI CCTC 2 cut(s) 72, 77
Mox20I TGGCCA 1 cut(s) 215
MscI TGGCCA 1 cut(s) 215
Msp20I TGGCCA 1 cut(s) 215
MspA1I CMGCKG 1 cut(s) 52
NcoI CCATGG 1 cut(s) 210
NdeII GATC 1 cut(s) 170
NlaIII CATG 2 cut(s) 214, 245
NlaIV GGNNCC 3 cut(s) 118, 119, 193
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 1 cut(s) 51
PleI GAGTC 1 cut(s) 143
PpsI GAGTC 1 cut(s) 143
PpuMI RGGWCCY 1 cut(s) 117
Psp5II RGGWCCY 1 cut(s) 117
PspN4I GGNNCC 3 cut(s) 118, 119, 193
PspPI GGNCC 2 cut(s) 117, 192
PspPPI RGGWCCY 1 cut(s) 117
SatI GCNGC 1 cut(s) 50
Sau3AI GATC 1 cut(s) 170
Sau96I GGNCC 2 cut(s) 117, 192
SchI GAGTC 1 cut(s) 143
SetI ASST 3 cut(s) 69, 204, 236
SgeI CNNG 9 cut(s) 52, 65, 70, 83, 121, 133, 169, 201, 223
SinI GGWCC 2 cut(s) 117, 192
Sse9I AATT 2 cut(s) 11, 134
SsiI CCGC 1 cut(s) 50
StyI CCWWGG 1 cut(s) 210
TaiI ACGT 1 cut(s) 204
TasI AATT 2 cut(s) 11, 134
TauI GCSGC 1 cut(s) 52
Van91I CCANNNNNTGG 1 cut(s) 211
VpaK11BI GGWCC 2 cut(s) 117, 192
XapI RAATTY 1 cut(s) 134
ZraI GACGTC 1 cut(s) 202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.