RchiOBHm_Chr7g0215251

CASP-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0014450
Physical Location & Seq
Forward (+)
32769533 .. 32771465
1933 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19260

Sequence Viewer

Length: 618 bp
ATGTCAACGGTGGTAGAGAAGTCTGCAGCGGAGGTTGCACCGGGAGACGAGTTAGAAGGGATGAGTAGCAATGGCAACGGCAGCAGCTTGAGAACGGCGGAGACGCTGCTGCGACTTCTGCCGATTGCTCCTTGTGTGGCGGCTCTGCTCGTCATGCTTCACGATTCCCAGGACAATGAGTTCGGATCCGTTTCCTACTCTCATATTGGAGCTTTCAGTGGAACTGTGGAAGTTTTTGGTGCATGCCAATGGCATCTGTGCTGGTTATTCCCTTCTCTCGGCTATCATATCAGCCAAGTCTCGTCCCCCACCAAGTCTCTAGCCTGGACTTTCTTCTTCATAGATCAATTGCTTACGTACATAATTCTGGGAGCTGGAGCTGTGTCAACGGAGGTTCTGTACTTGGCTTATAAAGGAGATTCAACTATAACGTGGAGTCCGGCTTGTGGGAGTTATGGTGGATTCTGTCACAAAGCCACAACTTCTGTGGTCATTACATTTCTGGTGGTGGCTTGCTTTGTTCTCATTTCACTTATTTCCTCCTACAAACTCTTCAGCAAGTTTGATGCTCCTGCCATCAACTCCATTAAGGGCATTAGAACTGCCACCTTCGGTTGA

Protein Analysis

205

Amino Acids

21.9

Weight (kDa)

5.65

Isoelectric Point (pI)

48.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CASP_dom PF04535 28 - 172 3.9e-30 Casparian strip membrane protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014450)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17200 AT1G17200
fragaria_vesca FvH4_5g24950
malus_domestica MD06G1011400.v1.1
prunus_persica Prupe.5G013700_v2.0.a1
pyrus_communis pycom06g00940
rosa_chinensis RchiOBHm_Chr7g0215251
rosa_laevigata RLG00000002677
rosa_multiflora Rmu_sc0002701.1_g000034 Rmu_sc0007904.1_g000026
rosa_roxburghii Rroxscaffold_3G00244380
rosa_rugosa Rorug07G0151500
rosa_samantha Rh7AG288200 Rh7BG280300 Rh7CG308000 Rh7DG291800
rosa_wichuraiana Rw7G024630

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 411
AciI CCGC 3 cut(s) 29, 98, 140
AclWI GGATC 2 cut(s) 180, 193
AcuI CTGAAG 1 cut(s) 538
AfaI GTAC 2 cut(s) 359, 401
AfiI CCNNNNNNNGG 2 cut(s) 278, 446
AgsI TTSAA 1 cut(s) 423
AjnI CCWGG 2 cut(s) 168, 323
AloI GAACNNNNNNTCC 2 cut(s) 164, 196
AluBI AGCT 4 cut(s) 87, 212, 374, 380
AluI AGCT 4 cut(s) 87, 212, 374, 380
Alw26I GTCTC 4 cut(s) 39, 95, 304, 321
AlwI GGATC 2 cut(s) 180, 193
ApeKI GCWGC 5 cut(s) 26, 81, 84, 106, 109
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AsuC2I CCSGG 1 cut(s) 42
BamHI GGATCC 1 cut(s) 185
BbvI GCAGC 5 cut(s) 38, 93, 93, 96, 96
BccI CCATC 1 cut(s) 584
BceAI ACGGC 2 cut(s) 94, 111
BciT130I CCWGG 2 cut(s) 170, 325
BcnI CCSGG 1 cut(s) 42
BcoDI GTCTC 4 cut(s) 39, 95, 304, 321
BfaI CTAG 1 cut(s) 320
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 6 cut(s) 27, 82, 85, 107, 110, 141
BlsI GCNGC 6 cut(s) 28, 83, 86, 108, 111, 142
Bme1390I CCNGG 3 cut(s) 42, 170, 325
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 3 cut(s) 42, 170, 325
BmsI GCATC 2 cut(s) 262, 556
BpmI CTGGAG 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 357
BsaJI CCNNGG 1 cut(s) 168
BsaXI ACNNNNNCTCC 4 cut(s) 383, 413, 442, 472
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 446
Bse3DI GCAATG 1 cut(s) 76
BseBI CCWGG 2 cut(s) 170, 325
BseDI CCNNGG 1 cut(s) 168
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 2 cut(s) 278, 446
BseMI GCAATG 1 cut(s) 76
BseXI GCAGC 5 cut(s) 38, 93, 93, 96, 96
BsiSI CCGG 2 cut(s) 41, 440
BslFI GGGAC 1 cut(s) 289
BslI CCNNNNNNNGG 2 cut(s) 278, 446
BsmAI GTCTC 4 cut(s) 39, 95, 304, 321
BsmBI CGTCTC 2 cut(s) 39, 95
BsmFI GGGAC 1 cut(s) 289
Bsp143I GATC 2 cut(s) 185, 343
BspACI CCGC 3 cut(s) 29, 98, 140
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 28
BspPI GGATC 2 cut(s) 180, 193
BsrDI GCAATG 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 168
BssMI GATC 2 cut(s) 185, 343
Bst2UI CCWGG 2 cut(s) 170, 325
Bst4CI ACNGT 2 cut(s) 10, 226
Bst6I CTCTTC 1 cut(s) 557
BstBAI YACGTR 1 cut(s) 357
BstC8I GCNNGC 2 cut(s) 244, 514
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 2 cut(s) 188, 346
BstMAI GTCTC 4 cut(s) 39, 95, 304, 321
BstMBI GATC 2 cut(s) 185, 343
BstMWI GCNNNNNNNGC 4 cut(s) 35, 81, 118, 154
BstNI CCWGG 2 cut(s) 170, 325
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 3 cut(s) 40, 168, 323
BstSFI CTRYAG 1 cut(s) 24
BstSNI TACGTA 1 cut(s) 357
BstV1I GCAGC 5 cut(s) 38, 93, 93, 96, 96
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 223
Cac8I GCNNGC 2 cut(s) 244, 514
CseI GACGC 1 cut(s) 112
Csp6I GTAC 2 cut(s) 358, 400
CspCI CAANNNNNGTGG 2 cut(s) 468, 503
CviAII CATG 2 cut(s) 154, 243
CviQI GTAC 2 cut(s) 358, 400
DpnI GATC 2 cut(s) 187, 345
DpnII GATC 2 cut(s) 185, 343
Eam1104I CTCTTC 1 cut(s) 557
EarI CTCTTC 1 cut(s) 557
EciI GGCGGA 1 cut(s) 113
Eco105I TACGTA 1 cut(s) 357
Eco57I CTGAAG 1 cut(s) 538
EcoRII CCWGG 2 cut(s) 168, 323
Esp3I CGTCTC 2 cut(s) 39, 95
FaeI CATG 2 cut(s) 157, 246
FaiI YATR 9 cut(s) 155, 204, 244, 288, 341, 362, 411, 428, 456
FaqI GGGAC 1 cut(s) 289
FatI CATG 2 cut(s) 153, 242
Fnu4HI GCNGC 6 cut(s) 27, 82, 85, 107, 110, 141
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 6 cut(s) 27, 82, 85, 107, 110, 141
FspBI CTAG 1 cut(s) 320
GluI GCNGC 6 cut(s) 27, 82, 85, 107, 110, 141
GsuI CTGGAG 1 cut(s) 396
HapII CCGG 2 cut(s) 41, 440
HgaI GACGC 1 cut(s) 112
Hin1II CATG 2 cut(s) 157, 246
HincII GTYRAC 2 cut(s) 6, 387
HindII GTYRAC 2 cut(s) 6, 387
HinfI GANTC 4 cut(s) 164, 419, 436, 462
HpaII CCGG 2 cut(s) 41, 440
Hpy166II GTNNAC 2 cut(s) 6, 387
Hpy188I TCNGA 1 cut(s) 185
Hpy188III TCNNGA 1 cut(s) 161
Hpy8I GTNNAC 2 cut(s) 6, 387
HpyAV CCTTC 2 cut(s) 50, 282
HpyCH4III ACNGT 2 cut(s) 10, 226
HpyCH4IV ACGT 2 cut(s) 356, 431
HpyCH4V TGCA 3 cut(s) 26, 38, 242
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 81, 118, 154
HpySE526I ACGT 2 cut(s) 356, 431
Hsp92II CATG 2 cut(s) 157, 246
Kzo9I GATC 2 cut(s) 185, 343
LmnI GCTCC 5 cut(s) 133, 209, 371, 377, 574
Lsp1109I GCAGC 5 cut(s) 38, 93, 93, 96, 96
LweI GCATC 2 cut(s) 262, 556
MaeI CTAG 1 cut(s) 320
MaeII ACGT 2 cut(s) 356, 431
MaeIII GTNAC 1 cut(s) 467
MalI GATC 2 cut(s) 187, 345
MboI GATC 2 cut(s) 185, 343
MboII GAAGA 3 cut(s) 325, 328, 544
MfeI CAATTG 1 cut(s) 347
MflI RGATCY 1 cut(s) 185
MluCI AATT 2 cut(s) 347, 363
MlyI GAGTC 1 cut(s) 445
MnlI CCTC 3 cut(s) 25, 385, 550
MseI TTAA 1 cut(s) 588
MslI CAYNNNNRTG 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 29
MspI CCGG 2 cut(s) 41, 440
MspR9I CCNGG 3 cut(s) 42, 170, 325
MunI CAATTG 1 cut(s) 347
MvaI CCWGG 2 cut(s) 170, 325
MwoI GCNNNNNNNGC 4 cut(s) 35, 81, 118, 154
NciI CCSGG 1 cut(s) 42
NdeII GATC 2 cut(s) 185, 343
NlaIII CATG 2 cut(s) 157, 246
NlaIV GGNNCC 1 cut(s) 187
NmeAIII GCCGAG 1 cut(s) 258
NmuCI GTSAC 1 cut(s) 467
NspI RCATGY 1 cut(s) 246
PaeI GCATGC 1 cut(s) 246
PfeI GAWTC 3 cut(s) 164, 419, 462
PkrI GCNGC 6 cut(s) 28, 83, 86, 108, 111, 142
PleI GAGTC 1 cut(s) 444
PpsI GAGTC 1 cut(s) 444
Ppu21I YACGTR 1 cut(s) 357
PsiI TTATAA 1 cut(s) 411
Psp6I CCWGG 2 cut(s) 168, 323
PspGI CCWGG 2 cut(s) 168, 323
PspN4I GGNNCC 1 cut(s) 187
PstI CTGCAG 1 cut(s) 28
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 2 cut(s) 359, 401
RsaNI GTAC 2 cut(s) 358, 400
RseI CAYNNNNRTG 1 cut(s) 247
SaqAI TTAA 1 cut(s) 588
SatI GCNGC 6 cut(s) 27, 82, 85, 107, 110, 141
Sau3AI GATC 2 cut(s) 185, 343
SchI GAGTC 1 cut(s) 445
ScrFI CCNGG 3 cut(s) 42, 170, 325
SetI ASST 9 cut(s) 36, 89, 214, 359, 376, 382, 396, 434, 611
SfaNI GCATC 2 cut(s) 262, 556
SfcI CTRYAG 1 cut(s) 24
SmiMI CAYNNNNRTG 1 cut(s) 247
SmlI CTYRAG 1 cut(s) 88
SmoI CTYRAG 1 cut(s) 88
SnaBI TACGTA 1 cut(s) 357
SphI GCATGC 1 cut(s) 246
Sse9I AATT 2 cut(s) 347, 363
SsiI CCGC 3 cut(s) 29, 98, 140
SspMI CTAG 1 cut(s) 320
StyD4I CCNGG 3 cut(s) 40, 168, 323
TaaI ACNGT 2 cut(s) 10, 226
TaiI ACGT 2 cut(s) 359, 434
TasI AATT 2 cut(s) 347, 363
TatI WGTACW 1 cut(s) 399
TauI GCSGC 1 cut(s) 143
TfiI GAWTC 3 cut(s) 164, 419, 462
Tru1I TTAA 1 cut(s) 588
Tru9I TTAA 1 cut(s) 588
TscAI CASTG 1 cut(s) 223
TseFI GTSAC 1 cut(s) 467
TseI GCWGC 5 cut(s) 26, 81, 84, 106, 109
Tsp45I GTSAC 1 cut(s) 467
TspDTI ATGAA 1 cut(s) 328
TspGWI ACGGA 2 cut(s) 178, 404
TspRI CASTG 1 cut(s) 223
XceI RCATGY 1 cut(s) 246
XcmI CCANNNNNNNNNTGG 1 cut(s) 484
XspI CTAG 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.