AT1G17230
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011424
Physical Location & Seq
Forward (+)
5890616 .. 5895141
4526 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G17230.3

Sequence Viewer

Length: 3306 bp
ATGAGAGGGAGGATATGTTTCTTGGCAATAGTGATTCTCTGTTCTTTCTCCTTCATCTTAGTAAGATCCTTAAACGAAGAAGGGCGTGTTCTTCTGGAGTTTAAAGCTTTCCTTAATGACTCCAATGGCTATCTCGCAAGCTGGAATCAGTTGGATTCAAATCCCTGCAACTGGACCGGAATCGCGTGTACCCATCTCAGAACTGTAACTTCTGTTGATCTAAATGGGATGAATCTATCAGGTACACTATCTCCTCTCATATGCAAGCTTCATGGTTTAAGGAAATTGAATGTCTCCACCAACTTCATCTCTGGTCCAATCCCTCAAGATTTATCTCTCTGTCGAAGTCTAGAGGTTCTTGATCTCTGCACAAATAGGTTCCATGGAGTGATACCAATTCAGCTAACCATGATCATCACTCTTAAGAAGCTGTATCTATGCGAGAATTATCTTTTCGGTTCTATCCCTAGACAAATCGGTAATTTGAGTTCACTCCAAGAGCTTGTGATCTACAGCAATAATCTCACCGGTGTAATCCCTCCTTCCATGGCGAAATTGAGACAGCTCCGGATCATTAGGGCAGGACGGAATGGATTCTCGGGTGTGATTCCGTCTGAAATCAGCGGATGCGAGAGCCTAAAGGTACTTGGATTAGCAGAGAATCTTCTTGAGGGTTCTCTTCCTAAGCAGCTCGAGAAGCTTCAAAATCTTACTGATTTGATACTCTGGCAAAACCGTCTATCTGGTGAGATACCTCCTTCCGTAGGAAACATCAGCAGACTGGAGGTGCTTGCGCTGCATGAAAACTACTTCACGGGATCAATTCCAAGAGAGATTGGGAAGCTCACAAAGATGAAAAGGCTGTACCTTTACACAAACCAGTTAACCGGAGAGATACCTCGCGAAATAGGCAACTTGATAGATGCAGCTGAGATAGATTTTTCGGAGAATCAGTTAACAGGTTTCATACCAAAAGAGTTTGGTCATATCCTGAATCTCAAATTACTTCATCTTTTTGAGAACATTCTTCTAGGTCCAATTCCTAGGGAGCTTGGGGAATTGACACTGTTGGAGAAGCTAGACTTGTCTATCAATAGACTAAACGGTACTATCCCGCAAGAGCTTCAGTTCCTACCTTACCTTGTAGATTTGCAGCTTTTTGACAACCAGCTTGAAGGGAAGATACCTCCTTTAATCGGTTTCTATAGCAATTTTTCTGTTCTTGACATGTCTGCCAATTCTCTGTCTGGTCCAATTCCTGCCCACTTCTGCAGATTTCAGACGCTAATACTTCTGAGTCTTGGTTCAAACAAGTTATCAGGAAACATCCCTCGTGATCTGAAAACCTGCAAGTCACTGACAAAGCTAATGCTAGGCGATAACCAGCTAACAGGAAGCCTTCCCATTGAATTATTTAATCTTCAGAACCTTACTGCATTAGAGCTTCACCAAAACTGGTTATCAGGGAATATATCTGCAGACCTGGGAAAGCTGAAGAATTTGGAAAGACTGCGTCTAGCTAACAACAATTTTACTGGTGAAATTCCTCCTGAGATTGGGAATCTCACAAAGATTGTTGGCTTTAACATCTCCTCCAATCAGCTCACTGGTCACATCCCTAAAGAGTTGGGAAGTTGTGTCACTATCCAGAGGCTTGACCTTAGTGGCAACAAGTTTTCCGGATACATAGCACAAGAGCTTGGTCAGTTGGTATATTTGGAGATTTTGAGATTGTCTGATAATAGATTGACCGGAGAAATTCCTCATAGCTTTGGAGATCTTACTCGGCTCATGGAGTTACAACTAGGAGGCAATCTCTTGTCTGAAAACATCCCAGTGGAGCTCGGGAAGTTAACCTCTCTGCAAATCTCCCTCAACATTAGTCACAATAATCTCTCAGGTACTATTCCAGACAGTTTAGGAAATCTACAGATGTTGGAGATACTTTACCTCAACGACAACAAGCTTTCAGGTGAGATCCCTGCATCAATTGGGAATCTCATGAGCCTCCTCATCTGCAATATCTCAAACAATAACTTGGTCGGAACAGTACCAGACACAGCCGTGTTCCAGCGGATGGATTCATCGAACTTTGCTGGAAACCATGGTTTGTGTAACTCTCAGAGAAGCCATTGTCAACCACTTGTCCCACATTCTGATTCAAAGCTAAATTGGTTAATCAACGGTTCGCAAAGGCAAAAGATCTTGACAATCACTTGTATTGTAATCGGGTCGGTTTTTCTTATCACTTTTCTTGGTCTCTGTTGGACAATAAAGCGGCGGGAACCAGCGTTTGTTGCACTTGAGGATCAAACAAAACCAGATGTCATGGACAGCTACTATTTCCCTAAAAAAGGTTTCACATATCAAGGCCTCGTGGATGCAACCAGAAACTTTTCCGAAGACGTGGTTTTAGGGAGAGGAGCGTGTGGAACAGTCTACAAAGCTGAAATGTCAGGTGGCGAGGTGATAGCTGTAAAGAAGCTGAATTCTCGCGGTGAAGGAGCTAGTTCTGATAATAGTTTCAGAGCTGAGATATCAACTCTTGGAAAGATAAGGCACCGGAATATTGTGAAGCTATATGGTTTCTGCTATCACCAGAATTCAAATCTTCTCTTGTATGAGTACATGTCAAAAGGAAGCCTCGGCGAACAACTACAGCGAGGTGAGAAAAACTGTTTGTTGGATTGGAATGCTCGGTATAGAATCGCCCTCGGTGCTGCAGAGGGTTTGTGTTATCTCCATCATGATTGCAGACCTCAAATAGTCCATCGCGACATAAAATCGAACAACATTCTTCTTGATGAACGGTTCCAGGCTCATGTTGGAGATTTTGGCCTGGCTAAGTTGATTGATCTCTCTTACTCAAAGTCCATGTCAGCTGTTGCTGGGTCTTACGGATACATCGCTCCAGAATATGCTTACACGATGAAGGTGACAGAGAAATGTGATATCTATAGCTTTGGAGTTGTGCTTCTGGAGCTAATAACAGGAAAGCCCCCAGTTCAACCGCTGGAGCAAGGAGGGGATCTAGTCAATTGGGTTCGACGATCGATCCGTAACATGATTCCAACCATTGAAATGTTTGATGCGAGGCTAGATACAAATGATAAGAGAACAGTTCATGAAATGTCTCTTGTCCTAAAGATTGCACTGTTCTGCACCAGCAATTCTCCAGCTAGTAGACCAACTATGAGAGAAGTGGTCGCTATGATTACAGAAGCTCGGGGATCAAGTAGCCTTTCTTCCTCATCCATTACATCAGAAACTCCTCTAGAAGAAGCAAACTCCTCCAAAGAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

1101

Amino Acids

122.1

Weight (kDa)

6.88

Isoelectric Point (pI)

35.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 24 - 64 1.4e-14 Leucine rich repeat N-terminal domain
LRR_14 PF23598 99 - 218 7e-09 Leucine-rich repeat region
LRR_8 PF13855 140 - 197 1.2e-06 Leucine rich repeat
LRR_14 PF23598 213 - 292 5.1e-07 Leucine-rich repeat region
LRR_14 PF23598 423 - 554 4.5e-06 Leucine-rich repeat region
LRR_14 PF23598 535 - 622 1.6e-07 Leucine-rich repeat region
LRR_8 PF13855 573 - 632 1e-06 Leucine rich repeat
Pkinase PF00069 801 - 971 1.5e-34 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 804 - 960 2.5e-30 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17230 AT1G17230 AT1G17230
fragaria_vesca FvH4_3g16200 FvH4_3g16200 FvH4_3g16200
malus_domestica MD05G1211500.v1.1
prunus_persica Prupe.4G145700_v2.0.a1
pyrus_communis pycom05g19650
rosa_chinensis RchiOBHm_Chr5g0027271
rosa_laevigata RLG00000033007
rosa_multiflora Rmu_sc0001503.1_g000006
rosa_roxburghii Rroxscaffold_1G00052220 Rroxscaffold_4G00329160
rosa_rugosa Rorug05G0098000
rosa_samantha Rh5AG192100 Rh5BG189800 Rh5CG210200 Rh5DG191800
rosa_wichuraiana Rw5G017490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1355
AccB1I GGYRCC 1 cut(s) 2559
AccB7I CCANNNNNTGG 1 cut(s) 2077
AccI GTMKAC 2 cut(s) 2439, 3184
AccII CGCG 4 cut(s) 185, 903, 2496, 2775
AccIII TCCGGA 2 cut(s) 567, 1679
AciI CCGC 7 cut(s) 624, 1115, 2074, 2278, 2281, 2496, 3011
AclWI GGATC 8 cut(s) 60, 578, 826, 1972, 2316, 3036, 3049, 3238
AcsI RAATTY 6 cut(s) 1498, 1542, 1758, 2488, 2602, 3300
AcuI CTGAAG 3 cut(s) 1109, 1406, 1514
AfaI GTAC 8 cut(s) 190, 244, 645, 866, 1108, 1903, 2052, 2627
AfiI CCNNNNNNNGG 6 cut(s) 171, 764, 1196, 1556, 2077, 2354
AflII CTTAAG 1 cut(s) 422
AflIII ACRYGT 2 cut(s) 1227, 2628
AgeI ACCGGT 1 cut(s) 527
AjiI CACGTC 1 cut(s) 2407
AjnI CCWGG 3 cut(s) 1482, 2814, 2838
AleI CACNNNNGTG 1 cut(s) 2063
Alw21I GWGCWC 1 cut(s) 1845
Alw26I GTCTC 4 cut(s) 298, 553, 2264, 3138
AlwI GGATC 8 cut(s) 60, 578, 826, 1972, 2316, 3036, 3049, 3238
Ama87I CYCGRG 4 cut(s) 598, 692, 1844, 3225
Aor13HI TCCGGA 2 cut(s) 567, 1679
AoxI GGCC 2 cut(s) 2371, 2836
ApeKI GCWGC 5 cut(s) 688, 796, 926, 1153, 2720
ApoI RAATTY 6 cut(s) 1498, 1542, 1758, 2488, 2602, 3300
ArsI GACNNNNNNTTYG 2 cut(s) 2861, 2893
AsiGI ACCGGT 1 cut(s) 527
Asp700I GAANNNNTTC 2 cut(s) 593, 2395
AspA2I CCTAGG 1 cut(s) 1043
AspLEI GCGC 1 cut(s) 796
AspS9I GGNCC 4 cut(s) 174, 314, 1034, 1250
AvaI CYCGRG 4 cut(s) 598, 692, 1844, 3225
AvaII GGWCC 4 cut(s) 174, 314, 1034, 1250
AvrII CCTAGG 1 cut(s) 1043
BanI GGYRCC 1 cut(s) 2559
BanII GRGCYC 1 cut(s) 1845
BarI GAAGNNNNNNTAC 4 cut(s) 1167, 1199, 3229, 3261
BauI CACGAG 2 cut(s) 1332, 2375
BbsI GAAGAC 1 cut(s) 2409
Bbv12I GWGCWC 1 cut(s) 1845
BbvI GCAGC 5 cut(s) 700, 783, 938, 1165, 2707
BccI CCATC 4 cut(s) 201, 2071, 2751, 2778
BceAI ACGGC 1 cut(s) 2048
BciT130I CCWGG 3 cut(s) 1484, 2816, 2840
BciVI GTATCC 2 cut(s) 1676, 2894
BclI TGATCA 1 cut(s) 411
BcoDI GTCTC 4 cut(s) 298, 553, 2264, 3138
BfmI CTRYAG 8 cut(s) 511, 1204, 1270, 1476, 1928, 2657, 2721, 2956
BfrI CTTAAG 1 cut(s) 422
BfuAI ACCTGC 1 cut(s) 1355
BfuI GTATCC 2 cut(s) 1676, 2894
BglII AGATCT 2 cut(s) 1777, 2202
BisI GCNGC 6 cut(s) 689, 797, 927, 1154, 2279, 2721
BlnI CCTAGG 1 cut(s) 1043
BlsI GCNGC 6 cut(s) 690, 798, 928, 1155, 2280, 2722
Bme1390I CCNGG 3 cut(s) 1484, 2816, 2840
Bme18I GGWCC 4 cut(s) 174, 314, 1034, 1250
BmeT110I CYCGRG 4 cut(s) 598, 692, 1844, 3225
BmgBI CACGTC 1 cut(s) 2407
BmgT120I GGNCC 4 cut(s) 174, 314, 1034, 1250
BmiI GGNNCC 4 cut(s) 380, 2286, 2561, 2813
BmrFI CCNGG 3 cut(s) 1484, 2816, 2840
BmrI ACTGGG 2 cut(s) 1829, 2996
BmsI GCATC 5 cut(s) 617, 913, 1994, 2371, 3079
BmuI ACTGGG 2 cut(s) 1829, 2996
BpiI GAAGAC 1 cut(s) 2409
BplI GAGNNNNNCTC 2 cut(s) 1800, 1832
BpmI CTGGAG 6 cut(s) 116, 803, 2895, 2999, 3035, 3159
Bpu10I CCTNAGC 1 cut(s) 684
BpuEI CTTGAG 3 cut(s) 309, 689, 2324
Bsa29I ATCGAT 1 cut(s) 3053
BsaBI GATNNNNATC 1 cut(s) 159
BsaI GGTCTC 1 cut(s) 2264
BsaJI CCNNGG 7 cut(s) 382, 546, 1043, 1483, 2104, 2644, 2713
BsaWI WCCGGW 7 cut(s) 176, 527, 567, 887, 1679, 1751, 2562
BsaXI ACNNNNNCTCC 7 cut(s) 31, 235, 265, 938, 968, 1577, 1607
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 764, 1196, 1556, 2077, 2354
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 8 cut(s) 176, 786, 880, 1460, 1540, 1612, 1835, 3002
Bse8I GATNNNNATC 1 cut(s) 159
BseAI TCCGGA 2 cut(s) 567, 1679
BseBI CCWGG 3 cut(s) 1484, 2816, 2840
BseCI ATCGAT 1 cut(s) 3053
BseDI CCNNGG 7 cut(s) 382, 546, 1043, 1483, 2104, 2644, 2713
BseGI GGATG 8 cut(s) 234, 632, 1326, 1614, 1830, 2082, 2386, 3251
BseJI GATNNNNATC 1 cut(s) 159
BseLI CCNNNNNNNGG 6 cut(s) 171, 764, 1196, 1556, 2077, 2354
BseMII CTCAG 7 cut(s) 211, 921, 1286, 1542, 1911, 2135, 2523
BseNI ACTGG 8 cut(s) 176, 786, 880, 1460, 1540, 1612, 1835, 3002
BseRI GAGGAG 6 cut(s) 243, 1582, 2000, 2436, 3261, 3280
BseXI GCAGC 5 cut(s) 700, 783, 938, 1165, 2707
BseYI CCCAGC 1 cut(s) 2888
BsgI GTGCAG 2 cut(s) 352, 3145
Bsh1236I CGCG 4 cut(s) 185, 903, 2496, 2775
Bsh1285I CGRYCG 1 cut(s) 3053
BshFI GGCC 2 cut(s) 2373, 2838
BshNI GGYRCC 1 cut(s) 2559
BshTI ACCGGT 1 cut(s) 527
BshVI ATCGAT 1 cut(s) 3053
BsiEI CGRYCG 1 cut(s) 3053
BsiHKAI GWGCWC 1 cut(s) 1845
BsiHKCI CYCGRG 4 cut(s) 598, 692, 1844, 3225
BsiSI CCGG 7 cut(s) 177, 528, 568, 888, 1680, 1752, 2563
BslFI GGGAC 1 cut(s) 2132
BslI CCNNNNNNNGG 6 cut(s) 171, 764, 1196, 1556, 2077, 2354
BsmAI GTCTC 4 cut(s) 298, 553, 2264, 3138
BsmFI GGGAC 1 cut(s) 2132
BsmI GAATGC 1 cut(s) 2698
BsnI GGCC 2 cut(s) 2373, 2838
Bso31I GGTCTC 1 cut(s) 2264
BsoBI CYCGRG 4 cut(s) 598, 692, 1844, 3225
Bsp1286I GDGCHC 1 cut(s) 1845
Bsp13I TCCGGA 2 cut(s) 567, 1679
Bsp19I CCATGG 3 cut(s) 382, 546, 2104
Bsp68I TCGCGA 2 cut(s) 903, 2775
BspACI CCGC 7 cut(s) 624, 1115, 2074, 2278, 2281, 2496, 3011
BspANI GGCC 2 cut(s) 2373, 2838
BspCNI CTCAG 7 cut(s) 210, 922, 1287, 1543, 1910, 2134, 2524
BspDI ATCGAT 1 cut(s) 3053
BspEI TCCGGA 2 cut(s) 567, 1679
BspFNI CGCG 4 cut(s) 185, 903, 2496, 2775
BspHI TCATGA 3 cut(s) 2001, 2746, 3124
BspLI GGNNCC 4 cut(s) 380, 2286, 2561, 2813
BspMAI CTGCAG 3 cut(s) 1274, 1480, 2725
BspMI ACCTGC 1 cut(s) 1355
BspPI GGATC 8 cut(s) 60, 578, 826, 1972, 2316, 3036, 3049, 3238
BspT107I GGYRCC 1 cut(s) 2559
BspTI CTTAAG 1 cut(s) 422
BspTNI GGTCTC 1 cut(s) 2264
BsrFI RCCGGY 1 cut(s) 527
BsrI ACTGG 8 cut(s) 176, 786, 880, 1460, 1540, 1612, 1835, 3002
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 7 cut(s) 382, 546, 1043, 1483, 2104, 2644, 2713
BssSI CACGAG 2 cut(s) 1332, 2375
BssT1I CCWWGG 4 cut(s) 382, 546, 1043, 2104
Bst2BI CACGAG 2 cut(s) 1332, 2375
Bst2UI CCWGG 3 cut(s) 1484, 2816, 2840
Bst6I CTCTTC 1 cut(s) 684
BstAFI CTTAAG 1 cut(s) 422
BstC8I GCNNGC 3 cut(s) 139, 266, 792
BstDSI CCRYGG 3 cut(s) 382, 546, 2104
BstENI CCTNNNNNAGG 2 cut(s) 762, 2352
BstF5I GGATG 8 cut(s) 234, 632, 1326, 1614, 1830, 2082, 2386, 3251
BstFNI CGCG 4 cut(s) 185, 903, 2496, 2775
BstHHI GCGC 1 cut(s) 796
BstMAI GTCTC 4 cut(s) 298, 553, 2264, 3138
BstMCI CGRYCG 1 cut(s) 3053
BstMWI GCNNNNNNNGC 6 cut(s) 697, 796, 909, 2297, 2717, 2980
BstNI CCWGG 3 cut(s) 1484, 2816, 2840
BstNSI RCATGY 2 cut(s) 1231, 2632
BstSCI CCNGG 3 cut(s) 1482, 2814, 2838
BstSFI CTRYAG 8 cut(s) 511, 1204, 1270, 1476, 1928, 2657, 2721, 2956
BstUI CGCG 4 cut(s) 185, 903, 2496, 2775
BstV1I GCAGC 5 cut(s) 700, 783, 938, 1165, 2707
BstV2I GAAGAC 1 cut(s) 2409
BstX2I RGATCY 5 cut(s) 65, 1777, 1977, 2202, 3028
BstYI RGATCY 5 cut(s) 65, 1777, 1977, 2202, 3028
Bsu15I ATCGAT 1 cut(s) 3053
BsuI GTATCC 2 cut(s) 1676, 2894
BsuRI GGCC 2 cut(s) 2373, 2838
BsuTUI ATCGAT 1 cut(s) 3053
BtgI CCRYGG 3 cut(s) 382, 546, 2104
BtgZI GCGATG 2 cut(s) 2756, 2890
BtrI CACGTC 1 cut(s) 2407
BtsCI GGATG 8 cut(s) 234, 632, 1326, 1614, 1830, 2082, 2386, 3251
BtsIMutI CAGTG 5 cut(s) 1064, 1355, 1605, 1842, 3152
BtuMI TCGCGA 2 cut(s) 903, 2775
BveI ACCTGC 1 cut(s) 1355
Cac8I GCNNGC 3 cut(s) 139, 266, 792
CciI TCATGA 3 cut(s) 2001, 2746, 3124
CfoI GCGC 1 cut(s) 796
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 4 cut(s) 174, 314, 1034, 1250
ClaI ATCGAT 1 cut(s) 3053
CseI GACGC 2 cut(s) 1291, 1502
Csp6I GTAC 8 cut(s) 189, 243, 644, 865, 1107, 1902, 2051, 2626
CspAI ACCGGT 1 cut(s) 527
CviQI GTAC 8 cut(s) 189, 243, 644, 865, 1107, 1902, 2051, 2626
DraI TTTAAA 1 cut(s) 103
Eam1104I CTCTTC 1 cut(s) 684
EarI CTCTTC 1 cut(s) 684
Ecl136II GAGCTC 1 cut(s) 1843
Eco130I CCWWGG 4 cut(s) 382, 546, 1043, 2104
Eco147I AGGCCT 1 cut(s) 2373
Eco24I GRGCYC 1 cut(s) 1845
Eco31I GGTCTC 1 cut(s) 2264
Eco32I GATATC 2 cut(s) 2538, 2953
Eco47I GGWCC 4 cut(s) 174, 314, 1034, 1250
Eco53kI GAGCTC 1 cut(s) 1843
Eco57I CTGAAG 3 cut(s) 1109, 1406, 1514
Eco88I CYCGRG 4 cut(s) 598, 692, 1844, 3225
EcoICRI GAGCTC 1 cut(s) 1843
EcoNI CCTNNNNNAGG 2 cut(s) 762, 2352
EcoRI GAATTC 2 cut(s) 2488, 2602
EcoRII CCWGG 3 cut(s) 1482, 2814, 2838
EcoRV GATATC 2 cut(s) 2538, 2953
EcoT14I CCWWGG 4 cut(s) 382, 546, 1043, 2104
EcoT38I GRGCYC 1 cut(s) 1845
ErhI CCWWGG 4 cut(s) 382, 546, 1043, 2104
FalI AAGNNNNNCTT 4 cut(s) 96, 128, 1067, 1099
FaqI GGGAC 1 cut(s) 2132
FauI CCCGC 2 cut(s) 1122, 2274
FauNDI CATATG 1 cut(s) 260
FbaI TGATCA 1 cut(s) 411
FblI GTMKAC 2 cut(s) 2439, 3184
Fnu4HI GCNGC 6 cut(s) 689, 797, 927, 1154, 2279, 2721
FokI GGATG 8 cut(s) 241, 639, 1313, 1601, 1817, 2089, 2393, 3238
FriOI GRGCYC 1 cut(s) 1845
Fsp4HI GCNGC 6 cut(s) 689, 797, 927, 1154, 2279, 2721
GlaI GCGC 1 cut(s) 795
GluI GCNGC 6 cut(s) 689, 797, 927, 1154, 2279, 2721
GsaI CCCAGC 1 cut(s) 2892
GsuI CTGGAG 6 cut(s) 116, 803, 2895, 2999, 3035, 3159
HaeIII GGCC 2 cut(s) 2373, 2838
HapII CCGG 7 cut(s) 177, 528, 568, 888, 1680, 1752, 2563
HgaI GACGC 2 cut(s) 1291, 1502
HhaI GCGC 1 cut(s) 796
Hin6I GCGC 1 cut(s) 794
HinP1I GCGC 1 cut(s) 794
HincII GTYRAC 4 cut(s) 885, 957, 1854, 2138
HindII GTYRAC 4 cut(s) 885, 957, 1854, 2138
HindIII AAGCTT 4 cut(s) 105, 266, 698, 1964
HpaI GTTAAC 3 cut(s) 885, 957, 1854
HpaII CCGG 7 cut(s) 177, 528, 568, 888, 1680, 1752, 2563
Hpy166II GTNNAC 9 cut(s) 189, 245, 491, 885, 957, 1854, 2138, 2440, 3185
Hpy8I GTNNAC 9 cut(s) 189, 245, 491, 885, 957, 1854, 2138, 2440, 3185
Hpy99I CGWCG 1 cut(s) 3051
HpyAV CCTTC 8 cut(s) 61, 74, 552, 768, 1169, 1409, 2495, 2926
HpyCH4IV ACGT 1 cut(s) 2406
HpyF10VI GCNNNNNNNGC 6 cut(s) 697, 796, 909, 2297, 2717, 2980
HpySE526I ACGT 1 cut(s) 2406
HspAI GCGC 1 cut(s) 794
Kpn2I TCCGGA 2 cut(s) 567, 1679
Ksp22I TGATCA 1 cut(s) 411
KspAI GTTAAC 3 cut(s) 885, 957, 1854
LmnI GCTCC 8 cut(s) 570, 1048, 1840, 2423, 2504, 2914, 2980, 3016
Lsp1109I GCAGC 5 cut(s) 700, 783, 938, 1165, 2707
LweI GCATC 5 cut(s) 617, 913, 1994, 2371, 3079
MaeII ACGT 1 cut(s) 2406
MaeIII GTNAC 9 cut(s) 205, 1353, 1610, 1639, 1797, 1883, 2114, 2935, 3059
MfeI CAATTG 2 cut(s) 1989, 3037
MflI RGATCY 5 cut(s) 65, 1777, 1977, 2202, 3028
MhlI GDGCHC 1 cut(s) 1845
MlyI GAGTC 2 cut(s) 113, 1306
MmeI TCCRAC 8 cut(s) 132, 1050, 1917, 2023, 2246, 2664, 2806, 3095
MroI TCCGGA 2 cut(s) 567, 1679
MroXI GAANNNNTTC 2 cut(s) 593, 2395
MslI CAYNNNNRTG 4 cut(s) 851, 1835, 2063, 3080
MspA1I CMGCKG 5 cut(s) 624, 929, 2074, 2882, 3013
MspCI CTTAAG 1 cut(s) 422
MspI CCGG 7 cut(s) 177, 528, 568, 888, 1680, 1752, 2563
MspR9I CCNGG 3 cut(s) 1484, 2816, 2840
MunI CAATTG 2 cut(s) 1989, 3037
Mva1269I GAATGC 1 cut(s) 2698
MvaI CCWGG 3 cut(s) 1484, 2816, 2840
MvnI CGCG 4 cut(s) 185, 903, 2496, 2775
MwoI GCNNNNNNNGC 6 cut(s) 697, 796, 909, 2297, 2717, 2980
NcoI CCATGG 3 cut(s) 382, 546, 2104
NdeI CATATG 1 cut(s) 260
NlaIV GGNNCC 4 cut(s) 380, 2286, 2561, 2813
NmeAIII GCCGAG 2 cut(s) 1765, 2625
NmuCI GTSAC 5 cut(s) 1353, 1610, 1639, 1883, 2935
NruI TCGCGA 2 cut(s) 903, 2775
NspI RCATGY 2 cut(s) 1231, 2632
OliI CACNNNNGTG 1 cut(s) 2063
PaeR7I CTCGAG 1 cut(s) 692
PagI TCATGA 3 cut(s) 2001, 2746, 3124
PceI AGGCCT 1 cut(s) 2373
PciI ACATGT 2 cut(s) 1227, 2628
PcsI WCGNNNNNNNCGW 1 cut(s) 3055
PctI GAATGC 1 cut(s) 2698
PdmI GAANNNNTTC 2 cut(s) 593, 2395
PflFI GACNNNGTC 1 cut(s) 1512
PflMI CCANNNNNTGG 1 cut(s) 2077
PinAI ACCGGT 1 cut(s) 527
PkrI GCNGC 6 cut(s) 690, 798, 928, 1155, 2280, 2722
Ple19I CGATCG 1 cut(s) 3053
PleI GAGTC 2 cut(s) 113, 1305
PpsI GAGTC 2 cut(s) 113, 1305
PscI ACATGT 2 cut(s) 1227, 2628
Psp124BI GAGCTC 1 cut(s) 1845
Psp6I CCWGG 3 cut(s) 1482, 2814, 2838
PspFI CCCAGC 1 cut(s) 2888
PspGI CCWGG 3 cut(s) 1482, 2814, 2838
PspN4I GGNNCC 4 cut(s) 380, 2286, 2561, 2813
PspPI GGNCC 4 cut(s) 174, 314, 1034, 1250
PsrI GAACNNNNNNTAC 2 cut(s) 472, 504
PstI CTGCAG 3 cut(s) 1274, 1480, 2725
PsuI RGATCY 5 cut(s) 65, 1777, 1977, 2202, 3028
PsyI GACNNNGTC 1 cut(s) 1512
PvuI CGATCG 1 cut(s) 3053
PvuII CAGCTG 2 cut(s) 929, 2882
RruI TCGCGA 2 cut(s) 903, 2775
RsaI GTAC 8 cut(s) 190, 244, 645, 866, 1108, 1903, 2052, 2627
RsaNI GTAC 8 cut(s) 189, 243, 644, 865, 1107, 1902, 2051, 2626
RseI CAYNNNNRTG 4 cut(s) 851, 1835, 2063, 3080
SacI GAGCTC 1 cut(s) 1845
SatI GCNGC 6 cut(s) 689, 797, 927, 1154, 2279, 2721
Sau96I GGNCC 4 cut(s) 174, 314, 1034, 1250
SchI GAGTC 2 cut(s) 113, 1306
ScrFI CCNGG 3 cut(s) 1484, 2816, 2840
SduI GDGCHC 1 cut(s) 1845
SfaNI GCATC 5 cut(s) 617, 913, 1994, 2371, 3079
SfcI CTRYAG 8 cut(s) 511, 1204, 1270, 1476, 1928, 2657, 2721, 2956
Sfr274I CTCGAG 1 cut(s) 692
SgrAI CRCCGGYG 1 cut(s) 527
SinI GGWCC 4 cut(s) 174, 314, 1034, 1250
SlaI CTCGAG 1 cut(s) 692
SmiMI CAYNNNNRTG 4 cut(s) 851, 1835, 2063, 3080
SmlI CTYRAG 5 cut(s) 324, 422, 668, 692, 2303
SmoI CTYRAG 5 cut(s) 324, 422, 668, 692, 2303
SseBI AGGCCT 1 cut(s) 2373
SsiI CCGC 7 cut(s) 624, 1115, 2074, 2278, 2281, 2496, 3011
SspI AATATT 1 cut(s) 2569
SstI GAGCTC 1 cut(s) 1845
StuI AGGCCT 1 cut(s) 2373
StyD4I CCNGG 3 cut(s) 1482, 2814, 2838
StyI CCWWGG 4 cut(s) 382, 546, 1043, 2104
TaiI ACGT 1 cut(s) 2409
TaqI TCGA 6 cut(s) 343, 693, 2087, 2786, 3046, 3053
TatI WGTACW 1 cut(s) 2625
TauI GCSGC 1 cut(s) 2281
TscAI CASTG 5 cut(s) 1071, 1362, 1612, 1842, 3159
TseFI GTSAC 5 cut(s) 1353, 1610, 1639, 1883, 2935
TseI GCWGC 5 cut(s) 688, 796, 926, 1153, 2720
Tsp45I GTSAC 5 cut(s) 1353, 1610, 1639, 1883, 2935
TspGWI ACGGA 5 cut(s) 600, 601, 751, 2913, 3047
TspRI CASTG 5 cut(s) 1071, 1362, 1612, 1842, 3159
Tth111I GACNNNGTC 1 cut(s) 1512
Van91I CCANNNNNTGG 1 cut(s) 2077
Vha464I CTTAAG 1 cut(s) 422
VpaK11BI GGWCC 4 cut(s) 174, 314, 1034, 1250
XagI CCTNNNNNAGG 2 cut(s) 762, 2352
XapI RAATTY 6 cut(s) 1498, 1542, 1758, 2488, 2602, 3300
XbaI TCTAGA 2 cut(s) 349, 3274
XceI RCATGY 2 cut(s) 1231, 2632
XcmI CCANNNNNNNNNTGG 1 cut(s) 2822
XhoI CTCGAG 1 cut(s) 692
XmaJI CCTAGG 1 cut(s) 1043
XmiI GTMKAC 2 cut(s) 2439, 3184
XmnI GAANNNNTTC 2 cut(s) 593, 2395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.