Rorug05G0098000
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011424
Physical Location & Seq
Reverse (-)
8678164 .. 8679022
859 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0098000.1

Sequence Viewer

Length: 669 bp
ATGGCCTGCAATGTCACAATTACTGTGGTAATCATAAGTGTGATGTTGATCTTGATTCGTCTGCTCTATGTTTTTTACCAATCCGGCAAACCCCTCAAAACCAGAGGCTCTGCAGGCTTAGCATCACCCCTTAGTACATTCATTATATTAGGCTCAGGGGGTCACACTGCAGAGATGCTCAACCTGTTATCCGTGCTGCAAAAGGACAGATTTTCCCCCAGGTTCTACATTGCCGCTGCTACTGACAATATGAGTCTCCAGAAAGCTCGGTTGCTAGAAGAGACTGAGGACAAAATGGAGACTTCACGCTCACAGTTCATGCAGATCTATCGAAGTAGGGAAGTGGGGCAATCGTATATAACCTCTGTGTTGACTACTTTGATAGCTATGGTTCATGCACTTTGGCTAATGCTAAGAATCAGACCTCAAGTGATTCTATGCAACGGGCCTGGGACTTGTGTTCCACTTTGTGTAATTGCATTCTTATTTAAGGTTGTGGGGATTAGATGGTCATCTGTGTTTTATGTTGAGAGTATAGCAAGAGTACAGAGGCTTTCCCTAAGTGGCTTGCTTCTTTACAAGTTACGCATAGCTGATCAGTTCTTTGTCCAATGGCCACAGCTACAGAAGAAATATCCCCGAGCTCACTATGTTGGCTGTCTCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

222

Amino Acids

25.12

Weight (kDa)

9.85

Isoelectric Point (pI)

49.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alg14 PF08660 47 - 221 2e-69 Oligosaccharide biosynthesis protein Alg14 like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17230 AT1G17230 AT1G17230
fragaria_vesca FvH4_3g16200 FvH4_3g16200 FvH4_3g16200
malus_domestica MD05G1211500.v1.1
prunus_persica Prupe.4G145700_v2.0.a1
pyrus_communis pycom05g19650
rosa_chinensis RchiOBHm_Chr5g0027271
rosa_laevigata RLG00000033007
rosa_multiflora Rmu_sc0001503.1_g000006
rosa_roxburghii Rroxscaffold_1G00052220 Rroxscaffold_4G00329160
rosa_rugosa Rorug05G0098000
rosa_samantha Rh5AG192100 Rh5BG189800 Rh5CG210200 Rh5DG191800
rosa_wichuraiana Rw5G017490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 234
AcoI YGGCCR 1 cut(s) 614
AdeI CACNNNGTG 1 cut(s) 470
AfaI GTAC 2 cut(s) 136, 546
AjnI CCWGG 2 cut(s) 218, 448
AluBI AGCT 5 cut(s) 266, 386, 593, 622, 644
AluI AGCT 5 cut(s) 266, 386, 593, 622, 644
Alw21I GWGCWC 1 cut(s) 646
Alw26I GTCTC 4 cut(s) 260, 275, 293, 665
Ama87I CYCGRG 1 cut(s) 639
AoxI GGCC 3 cut(s) 3, 446, 614
ApeKI GCWGC 2 cut(s) 196, 236
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 1 cut(s) 117
AvaI CYCGRG 1 cut(s) 639
BalI TGGCCA 1 cut(s) 616
BanII GRGCYC 1 cut(s) 646
Bbv12I GWGCWC 1 cut(s) 646
BbvI GCAGC 2 cut(s) 183, 223
BccI CCATC 1 cut(s) 501
BcgI CGANNNNNNTGC 2 cut(s) 311, 345
BciT130I CCWGG 2 cut(s) 220, 450
BclI TGATCA 1 cut(s) 595
BcoDI GTCTC 4 cut(s) 260, 275, 293, 665
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 3 cut(s) 111, 168, 623
BglII AGATCT 1 cut(s) 324
BisI GCNGC 3 cut(s) 197, 234, 237
BlpI GCTNAGC 1 cut(s) 118
BlsI GCNGC 3 cut(s) 198, 235, 238
Bme1390I CCNGG 2 cut(s) 220, 450
BmeT110I CYCGRG 1 cut(s) 639
BmgT120I GGNCC 1 cut(s) 446
BmrFI CCNGG 2 cut(s) 220, 450
BmsI GCATC 2 cut(s) 131, 165
BpmI CTGGAG 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 154
Bpu1102I GCTNAGC 1 cut(s) 118
BpuEI CTTGAG 1 cut(s) 411
BsaBI GATNNNNATC 2 cut(s) 47, 511
BsaJI CCNNGG 2 cut(s) 218, 449
Bse3DI GCAATG 2 cut(s) 16, 228
Bse8I GATNNNNATC 2 cut(s) 47, 511
BseBI CCWGG 2 cut(s) 220, 450
BseDI CCNNGG 2 cut(s) 218, 449
BseJI GATNNNNATC 2 cut(s) 47, 511
BseMI GCAATG 2 cut(s) 16, 228
BseMII CTCAG 2 cut(s) 168, 276
BseXI GCAGC 2 cut(s) 183, 223
BshFI GGCC 3 cut(s) 5, 448, 616
BsiHKAI GWGCWC 1 cut(s) 646
BsiHKCI CYCGRG 1 cut(s) 639
BsiSI CCGG 1 cut(s) 84
BslFI GGGAC 1 cut(s) 466
BsmAI GTCTC 4 cut(s) 260, 275, 293, 665
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 479
BsnI GGCC 3 cut(s) 5, 448, 616
BsoBI CYCGRG 1 cut(s) 639
Bsp1286I GDGCHC 1 cut(s) 646
Bsp143I GATC 3 cut(s) 48, 324, 595
Bsp1720I GCTNAGC 1 cut(s) 118
BspACI CCGC 1 cut(s) 234
BspANI GGCC 3 cut(s) 5, 448, 616
BspCNI CTCAG 2 cut(s) 167, 277
BspMAI CTGCAG 2 cut(s) 115, 172
BsrDI GCAATG 2 cut(s) 16, 228
BssECI CCNNGG 2 cut(s) 218, 449
BssMI GATC 3 cut(s) 48, 324, 595
Bst2UI CCWGG 2 cut(s) 220, 450
Bst4CI ACNGT 2 cut(s) 25, 315
Bst6I CTCTTC 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 7, 115, 569
BstDEI CTNAG 6 cut(s) 118, 131, 154, 285, 413, 560
BstKTI GATC 3 cut(s) 51, 327, 598
BstMAI GTCTC 4 cut(s) 260, 275, 293, 665
BstMBI GATC 3 cut(s) 48, 324, 595
BstMWI GCNNNNNNNGC 2 cut(s) 114, 119
BstNI CCWGG 2 cut(s) 220, 450
BstSCI CCNGG 2 cut(s) 218, 448
BstSFI CTRYAG 3 cut(s) 111, 168, 623
BstV1I GCAGC 2 cut(s) 183, 223
BstX2I RGATCY 1 cut(s) 324
BstYI RGATCY 1 cut(s) 324
BsuRI GGCC 3 cut(s) 5, 448, 616
BtsI GCAGTG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 165
Cac8I GCNNGC 3 cut(s) 7, 115, 569
Cfr13I GGNCC 1 cut(s) 446
Csp6I GTAC 2 cut(s) 135, 545
CspCI CAANNNNNGTGG 2 cut(s) 6, 41
CviAII CATG 3 cut(s) 319, 395, 664
CviQI GTAC 2 cut(s) 135, 545
DdeI CTNAG 6 cut(s) 118, 131, 154, 285, 413, 560
DpnI GATC 3 cut(s) 50, 326, 597
DpnII GATC 3 cut(s) 48, 324, 595
DraIII CACNNNGTG 1 cut(s) 470
EaeI YGGCCR 1 cut(s) 614
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Ecl136II GAGCTC 1 cut(s) 644
Eco24I GRGCYC 1 cut(s) 646
Eco53kI GAGCTC 1 cut(s) 644
Eco88I CYCGRG 1 cut(s) 639
EcoICRI GAGCTC 1 cut(s) 644
EcoRII CCWGG 2 cut(s) 218, 448
EcoT38I GRGCYC 1 cut(s) 646
FaeI CATG 3 cut(s) 322, 398, 667
FaqI GGGAC 1 cut(s) 466
FatI CATG 3 cut(s) 318, 394, 663
FbaI TGATCA 1 cut(s) 595
Fnu4HI GCNGC 3 cut(s) 197, 234, 237
FriOI GRGCYC 1 cut(s) 646
Fsp4HI GCNGC 3 cut(s) 197, 234, 237
FspBI CTAG 1 cut(s) 275
GluI GCNGC 3 cut(s) 197, 234, 237
GsuI CTGGAG 1 cut(s) 242
HaeIII GGCC 3 cut(s) 5, 448, 616
HapII CCGG 1 cut(s) 84
Hin1II CATG 3 cut(s) 322, 398, 667
HincII GTYRAC 1 cut(s) 372
HindII GTYRAC 1 cut(s) 372
HinfI GANTC 4 cut(s) 55, 253, 417, 433
HpaII CCGG 1 cut(s) 84
HphI GGTGA 1 cut(s) 117
Hpy166II GTNNAC 1 cut(s) 372
Hpy188I TCNGA 1 cut(s) 422
Hpy188III TCNNGA 2 cut(s) 52, 259
Hpy8I GTNNAC 1 cut(s) 372
HpyCH4III ACNGT 2 cut(s) 25, 315
HpyCH4V TGCA 8 cut(s) 9, 113, 170, 199, 322, 398, 441, 479
HpyF10VI GCNNNNNNNGC 2 cut(s) 114, 119
HpyF3I CTNAG 6 cut(s) 118, 131, 154, 285, 413, 560
Hsp92II CATG 3 cut(s) 322, 398, 667
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 3 cut(s) 48, 324, 595
Lsp1109I GCAGC 2 cut(s) 183, 223
LweI GCATC 2 cut(s) 131, 165
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 3 cut(s) 13, 161, 582
MalI GATC 3 cut(s) 50, 326, 597
MboI GATC 3 cut(s) 48, 324, 595
MboII GAAGA 2 cut(s) 290, 640
MflI RGATCY 1 cut(s) 324
MhlI GDGCHC 1 cut(s) 646
MlsI TGGCCA 1 cut(s) 616
MluCI AATT 2 cut(s) 18, 474
MluNI TGGCCA 1 cut(s) 616
MlyI GAGTC 1 cut(s) 262
MnlI CCTC 6 cut(s) 98, 104, 280, 373, 435, 543
Mox20I TGGCCA 1 cut(s) 616
MscI TGGCCA 1 cut(s) 616
MseI TTAA 1 cut(s) 489
MslI CAYNNNNRTG 1 cut(s) 38
Msp20I TGGCCA 1 cut(s) 616
MspA1I CMGCKG 1 cut(s) 236
MspI CCGG 1 cut(s) 84
MspR9I CCNGG 2 cut(s) 220, 450
Mva1269I GAATGC 1 cut(s) 479
MvaI CCWGG 2 cut(s) 220, 450
MwoI GCNNNNNNNGC 2 cut(s) 114, 119
NdeII GATC 3 cut(s) 48, 324, 595
NlaIII CATG 3 cut(s) 322, 398, 667
NmuCI GTSAC 2 cut(s) 13, 161
PctI GAATGC 1 cut(s) 479
PfeI GAWTC 3 cut(s) 55, 417, 433
PkrI GCNGC 3 cut(s) 198, 235, 238
PleI GAGTC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 261
Psp124BI GAGCTC 1 cut(s) 646
Psp6I CCWGG 2 cut(s) 218, 448
PspGI CCWGG 2 cut(s) 218, 448
PspPI GGNCC 1 cut(s) 446
PstI CTGCAG 2 cut(s) 115, 172
PsuI RGATCY 1 cut(s) 324
RsaI GTAC 2 cut(s) 136, 546
RsaNI GTAC 2 cut(s) 135, 545
RseI CAYNNNNRTG 1 cut(s) 38
SacI GAGCTC 1 cut(s) 646
SaqAI TTAA 1 cut(s) 489
SatI GCNGC 3 cut(s) 197, 234, 237
Sau3AI GATC 3 cut(s) 48, 324, 595
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 262
ScrFI CCNGG 2 cut(s) 220, 450
SduI GDGCHC 1 cut(s) 646
SfaNI GCATC 2 cut(s) 131, 165
SfcI CTRYAG 3 cut(s) 111, 168, 623
SmiMI CAYNNNNRTG 1 cut(s) 38
SmlI CTYRAG 1 cut(s) 426
SmoI CTYRAG 1 cut(s) 426
Sse9I AATT 2 cut(s) 18, 474
SsiI CCGC 1 cut(s) 234
SspMI CTAG 1 cut(s) 275
SstI GAGCTC 1 cut(s) 646
StyD4I CCNGG 2 cut(s) 218, 448
TaaI ACNGT 2 cut(s) 25, 315
TaqI TCGA 1 cut(s) 331
TasI AATT 2 cut(s) 18, 474
TatI WGTACW 2 cut(s) 134, 544
TauI GCSGC 1 cut(s) 236
TfiI GAWTC 3 cut(s) 55, 417, 433
Tru1I TTAA 1 cut(s) 489
Tru9I TTAA 1 cut(s) 489
TscAI CASTG 1 cut(s) 172
TseFI GTSAC 2 cut(s) 13, 161
TseI GCWGC 2 cut(s) 196, 236
Tsp45I GTSAC 2 cut(s) 13, 161
TspDTI ATGAA 3 cut(s) 130, 307, 383
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 172
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.