Rh5BG189800
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0011424
Physical Location & Seq
Reverse (-)
20883799 .. 20888978
5180 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG189800.1

Sequence Viewer

Length: 3108 bp
ATGGTTACTTCTTCCCTGAAAATGCTATTACACTTGGGACTCCTCGTGTTATGTTTCAGTTTTGGCTCTACAAACTCATTAGATGAAGAAAGTCTTTTTCTTTTGGAGTTCAAGAGATCCCTATCTGATCCAAGGAACAATCTTGGAAGCTGGAATTCATCACATTTGAGTCCTTGCAATTGGACTGGTGTGAGGTGTCTCAAGTCCAAGGTAACTTCTATAAATCTTACTGGCTTAAATTTGTCTGGTGTTTTGTCTCCAGTCATTTGCAATCTTCCTTACTTGGTTGAATTCAATGTGTCCAAGAACTTCTTCTCTGGGCCATTTCCCAATGATCTTGCTAACTGTCATAATCTAGCGTTTCTAGACCTTTGCACAAATAGGTTTCATGGGGAATTGGTTACCCCATTCACCAAAATGACCAACCTTAGGAAGTTGTATCTCTGTGAGAATTATGTGTTTGGTGAAATGCCTGAGGAGATAGGGAACTTAACTCTACTTGAAGAGCTTGTGATTTATAGTAATAATCTCACTGGCTCCATTCCTGGTTCAATTAGTAAGTTGAAAAAGTTAAAAGTCCTCAGGGCGGGTCGAAATTCTCTTTCTGGCCCAATACCAACTGTTATCAGTCAGTGTCAGAGCTTAGAAGTTTTGGGGTTATCACAGAATCATTTAGAAGGTTCAATTCCCAGGGAGCTTGAAGAACTTCAAAATCTGACTGATTTGATCCTTTGGCAAAATCATTTAACTGGTTCAGTTCCTGCTGAGATTGGTAATCTAAGTAGGCTAGAGTTGCTTGCCTTGCATGAAAACTCTTTCGGAGGAATGATCCCTAAGGAACTTGGGAAGTTATCACAGCTGAAGAGATTGTATATATACACCAACCAGTTGAATGGAACTATCCCAAGGGAACTAGGGAATTGTACCAATGCGGTTCATATAGATTTTTCTGAAAACCAGTTAAGTGGAGTCATACCACGGGAGTTGGGTTACATTCCTAATCTTTTGTTGCTTCACCTCTTCGAAAATCATCTGGAAGGAAACATTCCGAGGGAGCTTGGCCAGTTGAAGCAGCTGCAGATGTTAGACTTGTCCATAAACAATTTGACTGGCCCAATCCCACTAGAATTTCAGAACCTTCCTTACATGGATGAGTTGCAACTGTTTGATAATCATCTCGAGGGTAAAATTCCTCCTCTCCTTGGAGCTAACAGTAACCTCAGCATTCTTGACATGTCTGCAAATAAGCTTGTGGGTAGCATACCTGCGCATCTTTGCAAGTATGGGAAATTAGCATTTCTAAGCCTTGGGTCAAATAGGTTGTCTGGAAATATTCCTTATGGTATTAAAACATGCAAGTCTCTAGTCCAGCTAATGCTAGGAGACAACCATCTTACAGGAAGTCTCCCTATGGAGTTATATACTCTTTATGCTCTTGAAGTCTTTCAAAACCGATTCTCAGGACCTATACCTCCAGAGGTAGGCAGGTTTAAAAGTTTAGAAAGGCTACTGTTGTCAGATAACTATTTTATTGGGCATATTCCTCTTGAGATTGGCAACCTATCGCAGCTTGTGACCTTCAATGTTTCCTCTAACAGGCTCACGGGGAACATTCCTCATGAGCTGGGAAATTGTACAAAGCTACAGAGGCTTGATCTCAGTAGGAATTACTTCACTGGAGTTCTCCCGGAAGAACTTGGAAAGCTAGTGAATCTGGAACTTTTGAAGCTTTCTGATAACAAGTTGATGGGAGGGATACCGAGTACTCTAGGGGACCTTGCCCGATTGACTGAGTTGGAGATGGGGGGAAATCACTTTTCTGGTAGCGTCCCTTTTCAGCTGGGCCAACTCGGTGCTCTACAGATTGCCCTCAATATTAGCCATAATAATCTTTCGGGTGAAATTCCTGAAAAGTTAGGGGACTTGCAGATGTTGGAATCCCTCTACTTGAATGACAATCAGCTTGTTGGTGAAATTCCTGCCTCAATTGGTGAGTTGCTTAGCCTTCTGGTGTGCAACCTCTCTAACAATAACCTAGTGGGAACTGTGCCAAACACACAAGTATTTCAAAGGATGGATCCTTCAAATTTTGCTGGAAACAATGGATTGTGCAGATCTGGATCATACCATTGTCATCAACCTCCAGTTCAACCTCATACTCCAAAACGGAGCTGGATAAAGGAGGGTTCATCTAAAGAGAAATTAGTAAGCATCATTGCTGCTGTAATTGGAGTAATTTCCTTGATTCTCATAGTTGGTTTCTGTTGGGCAATGAAGCGCTCCAGACCTACTTTTGTTCCAGTTGAAGATCCAATCAAGCCAGACGTGTTGGACAACTATTACTTTCCGAAGGAAGGTTTCAAGTACCAGGATCTTGTTGTAGGCACCAACAATTTTTCAGACAATGCAGTTCTTGGAAGGGGAGCCTGTGGCACTGTGTACAAAGCCGTCATGGCTGATGGAGAGGTGATTGCAGTCAAAAAGCTCAAGGCACAAGGGGAAGGAGTCGGTGTCGATAGCAGCTTCCGCGCTGAGATATCAACCCTCGGGAAGATCAGGCATTGCAATATTGTGAAGCTCTATGGCTTCTGCTGTCACCAAGACTCGAATCTGCTCTTGTATGAGTACATGGAAAATGGCAGTTTAGGAGAACATCTCCATGGAAACGATCAAAGATGTTATCTAGACTGGAATACACGATATAAGATTGCTCTTGGAGCAGCAGAGGGTTTGTGTTATCTCCATTATTACTGCAAGCCCCAAATCGTTCACCGTGACATAAAGTCAAATAACATTTTACTGGATGAAGTTCTTGAAGCACATGTGGGAGATTTCGGCTTGGCAAAATTGATTGAATTGCCATACTCAAAATCCATGTCTGCTGTTGCTGGCTCATATGGCTACATTGCACCAGGTAAGAAAAGTGTTAATAATAGTTTTTACATATTATCACTCTGTCATTCTCGTTTCTACTGCTACATAAATGTTGATATACTATATATTACATCTCAGGGAATATATTCTTACTTTAGTGAATTATTACACTCACTTGAAGTAGCTCACTGTATCAGATGTTTATTTCAGAATAACCTATGTAACTTACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

1035

Amino Acids

114.72

Weight (kDa)

6.27

Isoelectric Point (pI)

31.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 28 - 66 7.9e-13 Leucine rich repeat N-terminal domain
LRR_14 PF23598 112 - 242 9.8e-14 Leucine-rich repeat region
LRR_8 PF13855 141 - 201 7.7e-06 Leucine rich repeat
LRR_8 PF13855 499 - 557 7.8e-06 Leucine rich repeat
LRR_8 PF13855 547 - 606 4.1e-08 Leucine rich repeat
Pkinase PF00069 801 - 971 3.5e-34 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 803 - 959 7.3e-29 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011424)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G17230 AT1G17230 AT1G17230
fragaria_vesca FvH4_3g16200 FvH4_3g16200 FvH4_3g16200
malus_domestica MD05G1211500.v1.1
prunus_persica Prupe.4G145700_v2.0.a1
pyrus_communis pycom05g19650
rosa_chinensis RchiOBHm_Chr5g0027271
rosa_laevigata RLG00000033007
rosa_multiflora Rmu_sc0001503.1_g000006
rosa_roxburghii Rroxscaffold_1G00052220 Rroxscaffold_4G00329160
rosa_rugosa Rorug05G0098000
rosa_samantha Rh5AG192100 Rh5BG189800 Rh5CG210200 Rh5DG191800
rosa_wichuraiana Rw5G017490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1269
Acc36I ACCTGC 2 cut(s) 1273, 1476
AccB1I GGYRCC 1 cut(s) 2384
AccII CGCG 1 cut(s) 2529
AciI CCGC 3 cut(s) 587, 932, 2527
AclWI GGATC 9 cut(s) 111, 122, 721, 823, 2072, 2085, 2128, 2303, 2379
AcoI YGGCCR 1 cut(s) 1060
AcsI RAATTY 9 cut(s) 154, 238, 290, 595, 1127, 1188, 1902, 1974, 2086
AcuI CTGAAG 1 cut(s) 881
AfaI GTAC 6 cut(s) 925, 1636, 1765, 2366, 2441, 2627
AfeI AGCGCT 1 cut(s) 2279
AfiI CCNNNNNNNGG 6 cut(s) 429, 586, 1202, 1481, 1596, 2354
AflIII ACRYGT 3 cut(s) 1233, 2325, 2821
AhdI GACNNNNNGTC 1 cut(s) 2782
AjiI CACGTC 1 cut(s) 2326
AjnI CCWGG 4 cut(s) 544, 689, 2367, 2911
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
Alw21I GWGCWC 1 cut(s) 1858
Alw26I GTCTC 5 cut(s) 203, 261, 1365, 1377, 1409
AlwI GGATC 9 cut(s) 111, 122, 721, 823, 2072, 2085, 2128, 2303, 2379
AlwNI CAGNNNCTG 1 cut(s) 761
Ama87I CYCGRG 2 cut(s) 1178, 2546
Aor51HI AGCGCT 1 cut(s) 2279
AoxI GGCC 5 cut(s) 320, 607, 1060, 1111, 1843
ApeKI GCWGC 6 cut(s) 1072, 1075, 1567, 2219, 2520, 2720
ApoI RAATTY 9 cut(s) 154, 238, 290, 595, 1127, 1188, 1902, 1974, 2086
ArsI GACNNNNNNTTYG 4 cut(s) 1307, 1339, 2861, 2893
Asp700I GAANNNNTTC 5 cut(s) 311, 705, 1443, 1670, 3019
AspLEI GCGC 3 cut(s) 1270, 2280, 2531
AspS9I GGNCC 6 cut(s) 320, 608, 1112, 1463, 1774, 1843
AsuC2I CCSGG 1 cut(s) 1688
AsuHPI GGTGA 9 cut(s) 403, 476, 1007, 1910, 1982, 2003, 2479, 2588, 2762
AsuII TTCGAA 1 cut(s) 1023
AvaI CYCGRG 2 cut(s) 1178, 2546
AvaII GGWCC 2 cut(s) 1463, 1774
AxyI CCTNAGG 4 cut(s) 428, 474, 581, 834
BalI TGGCCA 1 cut(s) 1062
BamHI GGATCC 1 cut(s) 2077
BanI GGYRCC 1 cut(s) 2384
BauI CACGAG 1 cut(s) 44
Bbv12I GWGCWC 1 cut(s) 1858
BbvCI CCTCAGC 1 cut(s) 1220
BbvI GCAGC 6 cut(s) 1062, 1084, 1579, 2206, 2532, 2732
BccI CCATC 5 cut(s) 1398, 1741, 1795, 2068, 2453
BceAI ACGGC 1 cut(s) 2432
BciT130I CCWGG 4 cut(s) 546, 691, 2369, 2913
BciVI GTATCC 1 cut(s) 1749
BcnI CCSGG 1 cut(s) 1688
BcoDI GTCTC 5 cut(s) 203, 261, 1365, 1377, 1409
BfmI CTRYAG 3 cut(s) 1076, 1643, 1859
BfoI RGCGCY 1 cut(s) 2281
BfuAI ACCTGC 2 cut(s) 1273, 1476
BfuI GTATCC 1 cut(s) 1749
BglI GCCNNNNNGGC 1 cut(s) 2453
BglII AGATCT 1 cut(s) 2114
BisI GCNGC 6 cut(s) 1073, 1076, 1568, 2220, 2521, 2721
BlpI GCTNAGC 1 cut(s) 2000
BlsI GCNGC 6 cut(s) 1074, 1077, 1569, 2221, 2522, 2722
BmcAI AGTACT 1 cut(s) 1765
Bme1390I CCNGG 5 cut(s) 546, 691, 1688, 2369, 2913
Bme18I GGWCC 2 cut(s) 1463, 1774
BmeRI GACNNNNNGTC 1 cut(s) 2782
BmeT110I CYCGRG 2 cut(s) 1178, 2546
BmgBI CACGTC 1 cut(s) 2326
BmgT120I GGNCC 6 cut(s) 320, 608, 1112, 1463, 1774, 1843
BmiI GGNNCC 5 cut(s) 538, 1775, 2079, 2386, 2425
BmrFI CCNGG 5 cut(s) 546, 691, 1688, 2369, 2913
BmsI GCATC 2 cut(s) 1279, 2220
BplI GAGNNNNNCTC 2 cut(s) 2640, 2672
BpmI CTGGAG 5 cut(s) 243, 1458, 1698, 2127, 2266
Bpu10I CCTNAGC 1 cut(s) 1220
Bpu1102I GCTNAGC 1 cut(s) 2000
Bpu14I TTCGAA 1 cut(s) 1023
BpuEI CTTGAG 3 cut(s) 185, 1568, 2471
BpuMI CCSGG 1 cut(s) 1688
BsaBI GATNNNNATC 3 cut(s) 121, 1173, 2119
BsaXI ACNNNNNCTCC 2 cut(s) 2496, 2526
Bsc4I CCNNNNNNNGG 6 cut(s) 429, 586, 1202, 1481, 1596, 2354
Bse21I CCTNAGG 4 cut(s) 428, 474, 581, 834
Bse3DI GCAATG 4 cut(s) 2214, 2277, 2560, 2904
Bse8I GATNNNNATC 3 cut(s) 121, 1173, 2119
BseBI CCWGG 4 cut(s) 546, 691, 2369, 2913
BseGI GGATG 3 cut(s) 1156, 2079, 2809
BseJI GATNNNNATC 3 cut(s) 121, 1173, 2119
BseLI CCNNNNNNNGG 6 cut(s) 429, 586, 1202, 1481, 1596, 2354
BseMI GCAATG 4 cut(s) 2214, 2277, 2560, 2904
BseMII CTCAG 9 cut(s) 465, 595, 756, 1234, 1473, 1672, 1782, 2523, 3023
BseRI GAGGAG 3 cut(s) 32, 491, 1185
BseXI GCAGC 6 cut(s) 1062, 1084, 1579, 2206, 2532, 2732
BseYI CCCAGC 2 cut(s) 1624, 1840
BsgI GTGCAG 1 cut(s) 2131
Bsh1236I CGCG 1 cut(s) 2529
BshFI GGCC 5 cut(s) 322, 609, 1062, 1113, 1845
BshNI GGYRCC 1 cut(s) 2384
BsiHKAI GWGCWC 1 cut(s) 1858
BsiHKCI CYCGRG 2 cut(s) 1178, 2546
BsiSI CCGG 1 cut(s) 1688
BslFI GGGAC 4 cut(s) 51, 1787, 1814, 1934
BslI CCNNNNNNNGG 6 cut(s) 429, 586, 1202, 1481, 1596, 2354
BsmAI GTCTC 5 cut(s) 203, 261, 1365, 1377, 1409
BsmFI GGGAC 4 cut(s) 51, 1787, 1814, 1934
BsmI GAATGC 1 cut(s) 1224
BsnI GGCC 5 cut(s) 322, 609, 1062, 1113, 1845
BsoBI CYCGRG 2 cut(s) 1178, 2546
Bsp119I TTCGAA 1 cut(s) 1023
Bsp1286I GDGCHC 1 cut(s) 1858
Bsp1407I TGTACA 2 cut(s) 1634, 2439
Bsp1720I GCTNAGC 1 cut(s) 2000
Bsp19I CCATGG 1 cut(s) 2659
BspACI CCGC 3 cut(s) 587, 932, 2527
BspANI GGCC 5 cut(s) 322, 609, 1062, 1113, 1845
BspCNI CTCAG 9 cut(s) 466, 594, 757, 1233, 1472, 1671, 1783, 2524, 3022
BspFNI CGCG 1 cut(s) 2529
BspHI TCATGA 1 cut(s) 1618
BspLI GGNNCC 5 cut(s) 538, 1775, 2079, 2386, 2425
BspMAI CTGCAG 1 cut(s) 1080
BspMI ACCTGC 2 cut(s) 1273, 1476
BspPI GGATC 9 cut(s) 111, 122, 721, 823, 2072, 2085, 2128, 2303, 2379
BspQI GCTCTTC 1 cut(s) 498
BspT104I TTCGAA 1 cut(s) 1023
BspT107I GGYRCC 1 cut(s) 2384
BsrDI GCAATG 4 cut(s) 2214, 2277, 2560, 2904
BsrGI TGTACA 2 cut(s) 1634, 2439
BssSI CACGAG 1 cut(s) 44
BssT1I CCWWGG 6 cut(s) 131, 207, 905, 1201, 1306, 2659
Bst2BI CACGAG 1 cut(s) 44
Bst2UI CCWGG 4 cut(s) 546, 691, 2369, 2913
Bst6I CTCTTC 3 cut(s) 498, 857, 1025
BstAUI TGTACA 2 cut(s) 1634, 2439
BstBI TTCGAA 1 cut(s) 1023
BstC8I GCNNGC 3 cut(s) 798, 2756, 2890
BstDSI CCRYGG 2 cut(s) 977, 2659
BstEII GGTNACC 1 cut(s) 400
BstENI CCTNNNNNAGG 1 cut(s) 1594
BstF5I GGATG 3 cut(s) 1156, 2079, 2809
BstFNI CGCG 1 cut(s) 2529
BstH2I RGCGCY 1 cut(s) 2281
BstHHI GCGC 3 cut(s) 1270, 2280, 2531
BstMAI GTCTC 5 cut(s) 203, 261, 1365, 1377, 1409
BstMWI GCNNNNNNNGC 7 cut(s) 793, 802, 1648, 2453, 2526, 2717, 2898
BstNI CCWGG 4 cut(s) 546, 691, 2369, 2913
BstNSI RCATGY 3 cut(s) 1237, 1356, 2825
BstPI GGTNACC 1 cut(s) 400
BstSCI CCNGG 5 cut(s) 544, 689, 1686, 2367, 2911
BstSFI CTRYAG 3 cut(s) 1076, 1643, 1859
BstUI CGCG 1 cut(s) 2529
BstV1I GCAGC 6 cut(s) 1062, 1084, 1579, 2206, 2532, 2732
BstX2I RGATCY 5 cut(s) 116, 2077, 2114, 2308, 2371
BstXI CCANNNNNNTGG 2 cut(s) 893, 965
BstYI RGATCY 5 cut(s) 116, 2077, 2114, 2308, 2371
Bsu36I CCTNAGG 4 cut(s) 428, 474, 581, 834
BsuI GTATCC 1 cut(s) 1749
BsuRI GGCC 5 cut(s) 322, 609, 1062, 1113, 1845
BtgI CCRYGG 2 cut(s) 977, 2659
BtrI CACGTC 1 cut(s) 2326
BtsCI GGATG 3 cut(s) 1156, 2079, 2809
BtsIMutI CAGTG 5 cut(s) 531, 638, 1674, 2433, 3061
BveI ACCTGC 2 cut(s) 1273, 1476
Cac8I GCNNGC 3 cut(s) 798, 2756, 2890
CaiI CAGNNNCTG 1 cut(s) 761
CciI TCATGA 1 cut(s) 1618
CfoI GCGC 3 cut(s) 1270, 2280, 2531
Cfr13I GGNCC 6 cut(s) 320, 608, 1112, 1463, 1774, 1843
CseI GACGC 1 cut(s) 1816
CsiI ACCWGGT 1 cut(s) 2911
Csp6I GTAC 6 cut(s) 924, 1635, 1764, 2365, 2440, 2626
CspCI CAANNNNNGTGG 2 cut(s) 966, 1001
CviQI GTAC 6 cut(s) 924, 1635, 1764, 2365, 2440, 2626
DraI TTTAAA 1 cut(s) 1492
DriI GACNNNNNGTC 1 cut(s) 2782
EaeI YGGCCR 1 cut(s) 1060
Eam1104I CTCTTC 3 cut(s) 498, 857, 1025
Eam1105I GACNNNNNGTC 1 cut(s) 2782
EarI CTCTTC 3 cut(s) 498, 857, 1025
Eco130I CCWWGG 6 cut(s) 131, 207, 905, 1201, 1306, 2659
Eco32I GATATC 1 cut(s) 2538
Eco47I GGWCC 2 cut(s) 1463, 1774
Eco47III AGCGCT 1 cut(s) 2279
Eco57I CTGAAG 1 cut(s) 881
Eco81I CCTNAGG 4 cut(s) 428, 474, 581, 834
Eco88I CYCGRG 2 cut(s) 1178, 2546
Eco91I GGTNACC 1 cut(s) 400
EcoNI CCTNNNNNAGG 1 cut(s) 1594
EcoO109I RGGNCCY 2 cut(s) 1463, 1774
EcoO65I GGTNACC 1 cut(s) 400
EcoRI GAATTC 2 cut(s) 154, 290
EcoRII CCWGG 4 cut(s) 544, 689, 2367, 2911
EcoRV GATATC 1 cut(s) 2538
EcoT14I CCWWGG 6 cut(s) 131, 207, 905, 1201, 1306, 2659
ErhI CCWWGG 6 cut(s) 131, 207, 905, 1201, 1306, 2659
FalI AAGNNNNNCTT 4 cut(s) 78, 110, 296, 328
FaqI GGGAC 4 cut(s) 51, 1787, 1814, 1934
FauI CCCGC 1 cut(s) 580
FauNDI CATATG 1 cut(s) 2896
Fnu4HI GCNGC 6 cut(s) 1073, 1076, 1568, 2220, 2521, 2721
FokI GGATG 3 cut(s) 1163, 2086, 2816
Fsp4HI GCNGC 6 cut(s) 1073, 1076, 1568, 2220, 2521, 2721
FspI TGCGCA 1 cut(s) 1269
GlaI GCGC 3 cut(s) 1269, 2279, 2530
GluI GCNGC 6 cut(s) 1073, 1076, 1568, 2220, 2521, 2721
GsaI CCCAGC 2 cut(s) 1628, 1844
GsuI CTGGAG 5 cut(s) 243, 1458, 1698, 2127, 2266
HaeII RGCGCY 1 cut(s) 2281
HaeIII GGCC 5 cut(s) 322, 609, 1062, 1113, 1845
HapII CCGG 1 cut(s) 1688
HgaI GACGC 1 cut(s) 1816
HhaI GCGC 3 cut(s) 1270, 2280, 2531
Hin6I GCGC 3 cut(s) 1268, 2278, 2529
HinP1I GCGC 3 cut(s) 1268, 2278, 2529
HindIII AAGCTT 2 cut(s) 1247, 1727
HpaII CCGG 1 cut(s) 1688
HphI GGTGA 9 cut(s) 403, 476, 1007, 1910, 1982, 2003, 2479, 2588, 2762
Hpy166II GTNNAC 2 cut(s) 2440, 2770
Hpy8I GTNNAC 2 cut(s) 2440, 2770
HpyCH4IV ACGT 1 cut(s) 2325
HpyF10VI GCNNNNNNNGC 7 cut(s) 793, 802, 1648, 2453, 2526, 2717, 2898
HpySE526I ACGT 1 cut(s) 2325
HspAI GCGC 3 cut(s) 1268, 2278, 2529
LguI GCTCTTC 1 cut(s) 498
LmnI GCTCC 8 cut(s) 542, 694, 1054, 1205, 2169, 2285, 2423, 2717
Lsp1109I GCAGC 6 cut(s) 1062, 1084, 1579, 2206, 2532, 2732
LweI GCATC 2 cut(s) 1279, 2220
MabI ACCWGGT 1 cut(s) 2911
MaeII ACGT 1 cut(s) 2325
MaeIII GTNAC 9 cut(s) 4, 211, 400, 989, 1214, 1573, 2594, 2774, 3095
MfeI CAATTG 2 cut(s) 178, 1986
MflI RGATCY 5 cut(s) 116, 2077, 2114, 2308, 2371
MhlI GDGCHC 1 cut(s) 1858
MlsI TGGCCA 1 cut(s) 1062
MluNI TGGCCA 1 cut(s) 1062
MlyI GAGTC 5 cut(s) 33, 178, 978, 2514, 2597
MmeI TCCRAC 3 cut(s) 1776, 1914, 2310
Mox20I TGGCCA 1 cut(s) 1062
MroXI GAANNNNTTC 5 cut(s) 311, 705, 1443, 1670, 3019
MscI TGGCCA 1 cut(s) 1062
MseI TTAA 8 cut(s) 236, 491, 572, 746, 962, 1347, 1491, 2928
MslI CAYNNNNRTG 2 cut(s) 416, 2658
Msp20I TGGCCA 1 cut(s) 1062
MspA1I CMGCKG 3 cut(s) 859, 1075, 1840
MspI CCGG 1 cut(s) 1688
MspR9I CCNGG 5 cut(s) 546, 691, 1688, 2369, 2913
MunI CAATTG 2 cut(s) 178, 1986
Mva1269I GAATGC 1 cut(s) 1224
MvaI CCWGG 4 cut(s) 546, 691, 2369, 2913
MvnI CGCG 1 cut(s) 2529
MwoI GCNNNNNNNGC 7 cut(s) 793, 802, 1648, 2453, 2526, 2717, 2898
NciI CCSGG 1 cut(s) 1688
NcoI CCATGG 1 cut(s) 2659
NdeI CATATG 1 cut(s) 2896
NlaIV GGNNCC 5 cut(s) 538, 1775, 2079, 2386, 2425
NmuCI GTSAC 3 cut(s) 1573, 2594, 2774
NsbI TGCGCA 1 cut(s) 1269
NspI RCATGY 3 cut(s) 1237, 1356, 2825
NspV TTCGAA 1 cut(s) 1023
PaeR7I CTCGAG 1 cut(s) 1178
PagI TCATGA 1 cut(s) 1618
PasI CCCWGGG 1 cut(s) 690
PciI ACATGT 2 cut(s) 1233, 2821
PciSI GCTCTTC 1 cut(s) 498
PctI GAATGC 1 cut(s) 1224
PdmI GAANNNNTTC 5 cut(s) 311, 705, 1443, 1670, 3019
PfeI GAWTC 6 cut(s) 667, 1455, 1711, 1937, 2245, 2608
PfoI TCCNGGA 1 cut(s) 1686
PkrI GCNGC 6 cut(s) 1074, 1077, 1569, 2221, 2522, 2722
PleI GAGTC 5 cut(s) 33, 177, 977, 2513, 2597
PpsI GAGTC 5 cut(s) 33, 177, 977, 2513, 2597
PpuMI RGGWCCY 2 cut(s) 1463, 1774
PscI ACATGT 2 cut(s) 1233, 2821
Psp5II RGGWCCY 2 cut(s) 1463, 1774
Psp6I CCWGG 4 cut(s) 544, 689, 2367, 2911
PspEI GGTNACC 1 cut(s) 400
PspFI CCCAGC 2 cut(s) 1624, 1840
PspGI CCWGG 4 cut(s) 544, 689, 2367, 2911
PspN4I GGNNCC 5 cut(s) 538, 1775, 2079, 2386, 2425
PspPI GGNCC 6 cut(s) 320, 608, 1112, 1463, 1774, 1843
PspPPI RGGWCCY 2 cut(s) 1463, 1774
PsrI GAACNNNNNNTAC 2 cut(s) 1127, 1159
PstI CTGCAG 1 cut(s) 1080
PstNI CAGNNNCTG 1 cut(s) 761
PsuI RGATCY 5 cut(s) 116, 2077, 2114, 2308, 2371
PvuII CAGCTG 3 cut(s) 859, 1075, 1840
RsaI GTAC 6 cut(s) 925, 1636, 1765, 2366, 2441, 2627
RsaNI GTAC 6 cut(s) 924, 1635, 1764, 2365, 2440, 2626
RseI CAYNNNNRTG 2 cut(s) 416, 2658
SapI GCTCTTC 1 cut(s) 498
SaqAI TTAA 8 cut(s) 236, 491, 572, 746, 962, 1347, 1491, 2928
SatI GCNGC 6 cut(s) 1073, 1076, 1568, 2220, 2521, 2721
Sau96I GGNCC 6 cut(s) 320, 608, 1112, 1463, 1774, 1843
ScaI AGTACT 1 cut(s) 1765
SchI GAGTC 5 cut(s) 33, 178, 978, 2514, 2597
ScrFI CCNGG 5 cut(s) 546, 691, 1688, 2369, 2913
SduI GDGCHC 1 cut(s) 1858
SexAI ACCWGGT 1 cut(s) 2911
SfaNI GCATC 2 cut(s) 1279, 2220
SfcI CTRYAG 3 cut(s) 1076, 1643, 1859
Sfr274I CTCGAG 1 cut(s) 1178
SfuI TTCGAA 1 cut(s) 1023
SinI GGWCC 2 cut(s) 1463, 1774
SlaI CTCGAG 1 cut(s) 1178
SmiMI CAYNNNNRTG 2 cut(s) 416, 2658
SmlI CTYRAG 4 cut(s) 200, 1178, 1547, 2486
SmoI CTYRAG 4 cut(s) 200, 1178, 1547, 2486
SsiI CCGC 3 cut(s) 587, 932, 2527
SspI AATATT 3 cut(s) 1333, 1876, 2569
StyD4I CCNGG 5 cut(s) 544, 689, 1686, 2367, 2911
StyI CCWWGG 6 cut(s) 131, 207, 905, 1201, 1306, 2659
TaiI ACGT 1 cut(s) 2328
TaqI TCGA 5 cut(s) 592, 1023, 1179, 2514, 2606
TatI WGTACW 4 cut(s) 1634, 1763, 2439, 2625
TfiI GAWTC 6 cut(s) 667, 1455, 1711, 1937, 2245, 2608
Tru1I TTAA 8 cut(s) 236, 491, 572, 746, 962, 1347, 1491, 2928
Tru9I TTAA 8 cut(s) 236, 491, 572, 746, 962, 1347, 1491, 2928
TscAI CASTG 5 cut(s) 538, 638, 1681, 2440, 3068
TseFI GTSAC 3 cut(s) 1573, 2594, 2774
TseI GCWGC 6 cut(s) 1072, 1075, 1567, 2219, 2520, 2720
Tsp45I GTSAC 3 cut(s) 1573, 2594, 2774
TspDTI ATGAA 8 cut(s) 99, 147, 377, 822, 926, 2178, 2288, 2820
TspGWI ACGGA 1 cut(s) 2182
TspRI CASTG 5 cut(s) 538, 638, 1681, 2440, 3068
VpaK11BI GGWCC 2 cut(s) 1463, 1774
XagI CCTNNNNNAGG 1 cut(s) 1594
XapI RAATTY 9 cut(s) 154, 238, 290, 595, 1127, 1188, 1902, 1974, 2086
XbaI TCTAGA 2 cut(s) 364, 2683
XceI RCATGY 3 cut(s) 1237, 1356, 2825
XcmI CCANNNNNNNNNTGG 1 cut(s) 2169
XhoI CTCGAG 1 cut(s) 1178
XmnI GAANNNNTTC 5 cut(s) 311, 705, 1443, 1670, 3019
ZrmI AGTACT 1 cut(s) 1765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.