Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0011424

Physical Location & Seq

Genomic Coordinates Forward (+)

62370075 .. 62374172

Gene Structure 4098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00329160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGTTTCTTCTTCCCTGAAAATGCTATTACACTTGGGACTCCTCGTGTTATGTTTCAGTTTTGGCTCTACAAACTCATTAGATGAAGAAAGTCTTTTTCTTTTGGAGTTCAAGAGATCCCTATCTGATCCAAGTAACAATCTTGGAAGCTGGAATTCATCACATTTGAGTCCTTGCAATTGGACTGGTGTAAGGTGTCTCAAGTCCAAGTTCTTGAAGCACACGTGGGAGATTCCGGCTTGGCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

83

Amino Acids

9.42

Weight (kDa)

7.77

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	28 - 66	1.8e-14	Leucine rich repeat N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011424)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17230 AT1G17230 AT1G17230
fragaria_vesca	FvH4_3g16200 FvH4_3g16200 FvH4_3g16200
malus_domestica	MD05G1211500.v1.1
prunus_persica	Prupe.4G145700_v2.0.a1
pyrus_communis	pycom05g19650
rosa_chinensis	RchiOBHm_Chr5g0027271
rosa_laevigata	RLG00000033007
rosa_multiflora	Rmu_sc0001503.1_g000006
rosa_roxburghii	Rroxscaffold_1G00052220 Rroxscaffold_4G00329160
rosa_rugosa	Rorug05G0098000
rosa_samantha	Rh5AG192100 Rh5BG189800 Rh5CG210200 Rh5DG191800
rosa_wichuraiana	Rw5G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	111, 122
AcsI	RAATTY	1 cut(s)	154
AcvI	CACGTG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	2 cut(s)	112, 217
AluBI	AGCT	1 cut(s)	150
AluI	AGCT	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	2 cut(s)	111, 122
ApoI	RAATTY	1 cut(s)	154
BauI	CACGAG	1 cut(s)	44
BbrPI	CACGTG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	203
BpuEI	CTTGAG	1 cut(s)	185
BsaAI	YACGTR	1 cut(s)	225
BsaBI	GATNNNNATC	1 cut(s)	121
Bse1I	ACTGG	1 cut(s)	190
Bse8I	GATNNNNATC	1 cut(s)	121
BseJI	GATNNNNATC	1 cut(s)	121
BseNI	ACTGG	1 cut(s)	190
BseRI	GAGGAG	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	236
BslFI	GGGAC	1 cut(s)	51
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	1 cut(s)	51
Bsp143I	GATC	2 cut(s)	116, 127
BspPI	GGATC	2 cut(s)	111, 122
BsrI	ACTGG	1 cut(s)	190
BssMI	GATC	2 cut(s)	116, 127
BssSI	CACGAG	1 cut(s)	44
Bst2BI	CACGAG	1 cut(s)	44
BstBAI	YACGTR	1 cut(s)	225
BstKTI	GATC	2 cut(s)	119, 130
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	116, 127
BstX2I	RGATCY	1 cut(s)	116
BstYI	RGATCY	1 cut(s)	116
CviJI	RGCY	3 cut(s)	66, 150, 239
CviKI_1	RGCY	3 cut(s)	66, 150, 239
DpnI	GATC	2 cut(s)	118, 129
DpnII	GATC	2 cut(s)	116, 127
Eco72I	CACGTG	1 cut(s)	225
EcoRI	GAATTC	1 cut(s)	154
FaiI	YATR	1 cut(s)	52
FalI	AAGNNNNNCTT	2 cut(s)	78, 110
FaqI	GGGAC	1 cut(s)	51
HapII	CCGG	1 cut(s)	236
HinfI	GANTC	3 cut(s)	39, 169, 232
HpaII	CCGG	1 cut(s)	236
Hpy188I	TCNGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	112, 214
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	1 cut(s)	177
HpySE526I	ACGT	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	116, 127
LpnPI	CCDG	3 cut(s)	29, 136, 171
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	1 cut(s)	134
MalI	GATC	2 cut(s)	118, 129
MboI	GATC	2 cut(s)	116, 127
MboII	GAAGA	2 cut(s)	3, 98
MfeI	CAATTG	1 cut(s)	178
MflI	RGATCY	1 cut(s)	116
MluCI	AATT	3 cut(s)	154, 178, 247
MlyI	GAGTC	2 cut(s)	33, 178
MnlI	CCTC	1 cut(s)	53
MspI	CCGG	1 cut(s)	236
MunI	CAATTG	1 cut(s)	178
NdeII	GATC	2 cut(s)	116, 127
PfeI	GAWTC	1 cut(s)	232
PleI	GAGTC	2 cut(s)	33, 177
PmaCI	CACGTG	1 cut(s)	225
PmlI	CACGTG	1 cut(s)	225
PpsI	GAGTC	2 cut(s)	33, 177
Ppu21I	YACGTR	1 cut(s)	225
PspCI	CACGTG	1 cut(s)	225
PsuI	RGATCY	1 cut(s)	116
Sau3AI	GATC	2 cut(s)	116, 127
SchI	GAGTC	2 cut(s)	33, 178
SetI	ASST	3 cut(s)	152, 197, 227
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	3 cut(s)	154, 178, 247
TaiI	ACGT	1 cut(s)	227
TasI	AATT	3 cut(s)	154, 178, 247
TfiI	GAWTC	1 cut(s)	232
TspDTI	ATGAA	2 cut(s)	99, 147
XapI	RAATTY	1 cut(s)	154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.