Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004344

Physical Location & Seq

Genomic Coordinates Reverse (-)

5916832 .. 5920393

Gene Structure 3562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G17280.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGCAGAAAAGGCCTGTATAAAACGTCTTCAAAAGGAATATAGAGCACTTTGCAAGGAACCAGTCTCCCATGTTGTTGCTCGTCCTTCCCCAAATGACATTCTCGAGTGGCATTATGTGCTGGAAGGCAGTGAGGGAACACCTTTTGCAGGTGGATTTTACTATGGAAAGATCAAGTTTCCTCCCGAGTATCCTTACAAGCCACCAGGGATTACAATGACTACACCAAATGGTCGATTCATGACACAGAAGAAAATTTGTTTATCTATGAGTGATTTTCATCCAGAAAGCTGGAATCCGATGTGGTCTGTATCAAGCATACTTACAGGACTTCTCTCATTTATGATGGATACCAGTCCGACAACTGGAAGTGTTAACACTACTGTAATTGAGAAACAACGGTTGGCTAAGTCATCTCTCGCTTTCAATTGTAAAACCCCAGCATTTCGAAAGCTATTTCCAGAGTATGTAGAGAAGTACAACCAGCAGCAACTAGCTGAGCAAGCTACCACACAACTGACAACACCAGAGTCTCCTCAAAAGAGCGATACCAAAGTCGAGTCAGAGAAAACCATCGATCCAACAAAGGGAGATTCAGAAGGTGGCTTGAAGGAGAGGAAAAAGAACAATAAACAGGGATTGCCAGCGTGGATAATACTGTTGCTAGTGTCGGTTTTCGGTGTGGTAATGGCGTTGCCTCTGCTTCAACTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0030433 GO:0031625 GO:0032446 GO:0033554 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 ko05012 map04120 map04141 map05012

Pfam Domains

Protein Families

UQ_con

Protein Analysis

237

Amino Acids

26.61

Weight (kDa)

9.03

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	9 - 129	4.3e-18	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004344)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT1G17280 AT5G50430 AT5G50430 AT5G50430
fragaria_vesca	FvH4_6g35920 FvH4_6g35920
malus_domestica	MD09G1172300.v1.1 MD17G1154600.v1.1
prunus_persica	Prupe.3G030700_v2.0.a1
pyrus_communis	pycom09g08990 pycom17g14730
rosa_chinensis	RchiOBHm_Chr2g0148081
rosa_laevigata	RLG00000020311
rosa_multiflora	Rmu_sc0000538.1_g000080
rosa_roxburghii	Rroxscaffold_2G00099170
rosa_rugosa	Rorug02G0403300 Rorug02G0403300 Rorug02G0403400 Rorug02G0403400
rosa_samantha	Rh2AG461100 Rh2BG474900 Rh2CG448200 Rh2DG483500
rosa_wichuraiana	Rw2G037640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	140
Acc36I	ACCTGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	572
AcsI	RAATTY	1 cut(s)	255
AfaI	GTAC	1 cut(s)	479
AfiI	CCNNNNNNNGG	3 cut(s)	149, 365, 587
AgsI	TTSAA	4 cut(s)	32, 427, 610, 707
AjnI	CCWGG	1 cut(s)	205
AjuI	GAANNNNNNNTTGG	2 cut(s)	386, 418
AluBI	AGCT	4 cut(s)	291, 454, 497, 506
AluI	AGCT	4 cut(s)	291, 454, 497, 506
Alw21I	GWGCWC	1 cut(s)	49
Alw26I	GTCTC	2 cut(s)	70, 537
AlwI	GGATC	1 cut(s)	572
Ama87I	CYCGRG	2 cut(s)	104, 185
AoxI	GGCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	487
ApoI	RAATTY	1 cut(s)	255
AsuII	TTCGAA	1 cut(s)	448
AvaI	CYCGRG	2 cut(s)	104, 185
BaeI	ACNNNNGTAYC	2 cut(s)	540, 573
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	2 cut(s)	340, 581
BciT130I	CCWGG	1 cut(s)	207
BciVI	GTATCC	2 cut(s)	201, 343
BcoDI	GTCTC	2 cut(s)	70, 537
BfaI	CTAG	2 cut(s)	494, 665
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	2 cut(s)	201, 343
BisI	GCNGC	1 cut(s)	488
BlpI	GCTNAGC	1 cut(s)	498
BlsI	GCNGC	1 cut(s)	489
Bme1390I	CCNGG	1 cut(s)	207
BmeT110I	CYCGRG	2 cut(s)	104, 185
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	1 cut(s)	207
BpiI	GAAGAC	1 cut(s)	20
Bpu1102I	GCTNAGC	1 cut(s)	498
Bpu14I	TTCGAA	1 cut(s)	448
Bsa29I	ATCGAT	1 cut(s)	576
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	206
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 365, 587
Bse1I	ACTGG	3 cut(s)	62, 354, 370
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	280
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	149, 365, 587
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	3 cut(s)	62, 354, 370
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	1 cut(s)	499
BseYI	CCCAGC	1 cut(s)	439
BshFI	GGCC	1 cut(s)	14
BshVI	ATCGAT	1 cut(s)	576
BsiHKAI	GWGCWC	1 cut(s)	49
BsiHKCI	CYCGRG	2 cut(s)	104, 185
BslI	CCNNNNNNNGG	3 cut(s)	149, 365, 587
BsmAI	GTCTC	2 cut(s)	70, 537
BsnI	GGCC	1 cut(s)	14
BsoBI	CYCGRG	2 cut(s)	104, 185
Bsp119I	TTCGAA	1 cut(s)	448
Bsp1286I	GDGCHC	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	171, 577
Bsp1720I	GCTNAGC	1 cut(s)	498
BspANI	GGCC	1 cut(s)	14
BspCNI	CTCAG	1 cut(s)	490
BspDI	ATCGAT	1 cut(s)	576
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	60
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	572
BspT104I	TTCGAA	1 cut(s)	448
BsrI	ACTGG	3 cut(s)	62, 354, 370
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	2 cut(s)	171, 577
Bst2UI	CCWGG	1 cut(s)	207
Bst4CI	ACNGT	4 cut(s)	385, 402, 660, 711
BstAPI	GCANNNNNTGC	1 cut(s)	118
BstBI	TTCGAA	1 cut(s)	448
BstC8I	GCNNGC	2 cut(s)	504, 645
BstDEI	CTNAG	2 cut(s)	408, 498
BstENI	CCTNNNNNAGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	2 cut(s)	174, 580
BstMAI	GTCTC	2 cut(s)	70, 537
BstMBI	GATC	2 cut(s)	171, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 118, 503
BstNI	CCWGG	1 cut(s)	207
BstSCI	CCNGG	1 cut(s)	205
BstV1I	GCAGC	1 cut(s)	499
BstV2I	GAAGAC	1 cut(s)	20
BstXI	CCANNNNNNTGG	1 cut(s)	291
Bsu15I	ATCGAT	1 cut(s)	576
BsuI	GTATCC	2 cut(s)	201, 343
BsuRI	GGCC	1 cut(s)	14
BsuTUI	ATCGAT	1 cut(s)	576
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	136
BtsIMutI	CAGTG	1 cut(s)	136
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	2 cut(s)	504, 645
CciI	TCATGA	1 cut(s)	240
ClaI	ATCGAT	1 cut(s)	576
Csp6I	GTAC	1 cut(s)	478
CviAII	CATG	2 cut(s)	71, 241
CviJI	RGCY	8 cut(s)	14, 202, 291, 407, 454, 497, 506, 606
CviKI_1	RGCY	8 cut(s)	14, 202, 291, 407, 454, 497, 506, 606
CviQI	GTAC	1 cut(s)	478
DdeI	CTNAG	2 cut(s)	408, 498
DpnI	GATC	2 cut(s)	173, 579
DpnII	GATC	2 cut(s)	171, 577
Eco147I	AGGCCT	1 cut(s)	14
Eco88I	CYCGRG	2 cut(s)	104, 185
EcoNI	CCTNNNNNAGG	1 cut(s)	147
EcoRII	CCWGG	1 cut(s)	205
FaeI	CATG	2 cut(s)	74, 244
FatI	CATG	2 cut(s)	70, 240
Fnu4HI	GCNGC	1 cut(s)	488
FokI	GGATG	1 cut(s)	267
Fsp4HI	GCNGC	1 cut(s)	488
FspBI	CTAG	2 cut(s)	494, 665
GluI	GCNGC	1 cut(s)	488
GsaI	CCCAGC	1 cut(s)	443
HaeIII	GGCC	1 cut(s)	14
Hin1II	CATG	2 cut(s)	74, 244
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HinfI	GANTC	5 cut(s)	237, 295, 530, 560, 593
HpaI	GTTAAC	1 cut(s)	376
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	4 cut(s)	300, 360, 565, 598
Hpy188III	TCNNGA	5 cut(s)	104, 185, 241, 284, 461
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	4 cut(s)	96, 119, 593, 604
HpyCH4III	ACNGT	4 cut(s)	385, 402, 660, 711
HpyCH4IV	ACGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	54, 149
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 118, 503
HpyF3I	CTNAG	2 cut(s)	408, 498
HpySE526I	ACGT	1 cut(s)	25
Hsp92II	CATG	2 cut(s)	74, 244
KspAI	GTTAAC	1 cut(s)	376
Kzo9I	GATC	2 cut(s)	171, 577
Lsp1109I	GCAGC	1 cut(s)	499
MaeI	CTAG	2 cut(s)	494, 665
MaeII	ACGT	1 cut(s)	25
MalI	GATC	2 cut(s)	173, 579
MboI	GATC	2 cut(s)	171, 577
MboII	GAAGA	2 cut(s)	20, 262
MfeI	CAATTG	1 cut(s)	427
MhlI	GDGCHC	1 cut(s)	49
MluCI	AATT	3 cut(s)	255, 387, 427
MlyI	GAGTC	2 cut(s)	539, 569
MmeI	TCCRAC	2 cut(s)	383, 605
MnlI	CCTC	5 cut(s)	127, 192, 546, 609, 708
MseI	TTAA	1 cut(s)	375
MspR9I	CCNGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	11, 118, 503
NdeII	GATC	2 cut(s)	171, 577
NlaIII	CATG	2 cut(s)	74, 244
NlaIV	GGNNCC	1 cut(s)	60
NspV	TTCGAA	1 cut(s)	448
PaeR7I	CTCGAG	1 cut(s)	104
PagI	TCATGA	1 cut(s)	240
PaqCI	CACCTGC	1 cut(s)	140
PceI	AGGCCT	1 cut(s)	14
PfeI	GAWTC	3 cut(s)	237, 295, 593
PkrI	GCNGC	1 cut(s)	489
PleI	GAGTC	2 cut(s)	538, 568
PpsI	GAGTC	2 cut(s)	538, 568
Psp6I	CCWGG	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	439
PspGI	CCWGG	1 cut(s)	205
PspN4I	GGNNCC	1 cut(s)	60
RsaI	GTAC	1 cut(s)	479
RsaNI	GTAC	1 cut(s)	478
SaqAI	TTAA	1 cut(s)	375
SatI	GCNGC	1 cut(s)	488
Sau3AI	GATC	2 cut(s)	171, 577
SchI	GAGTC	2 cut(s)	539, 569
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	49
SetI	ASST	8 cut(s)	28, 145, 154, 293, 456, 499, 508, 604
Sfr274I	CTCGAG	1 cut(s)	104
SfuI	TTCGAA	1 cut(s)	448
SlaI	CTCGAG	1 cut(s)	104
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	255, 387, 427
SseBI	AGGCCT	1 cut(s)	14
SspMI	CTAG	2 cut(s)	494, 665
StuI	AGGCCT	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	205
TaaI	ACNGT	4 cut(s)	385, 402, 660, 711
TaiI	ACGT	1 cut(s)	28
TaqI	TCGA	5 cut(s)	105, 235, 448, 558, 576
TasI	AATT	3 cut(s)	255, 387, 427
TatI	WGTACW	1 cut(s)	477
TfiI	GAWTC	3 cut(s)	237, 295, 593
Tru1I	TTAA	1 cut(s)	375
Tru9I	TTAA	1 cut(s)	375
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	487
TspDTI	ATGAA	2 cut(s)	229, 269
TspRI	CASTG	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	147
XapI	RAATTY	1 cut(s)	255
XhoI	CTCGAG	1 cut(s)	104
XspI	CTAG	2 cut(s)	494, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.